SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11417

Length: 1393 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11417

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit emb\|CAA63194.1\| ribonucleotide reductase R2 [Nicotiana tabacum]	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Ribonucleotide reductase small subunit	-	-	3.284e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribonucleoside-diphosphate reductase.	EC:1.17.4.1	-	7.684e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	7.684e-18	%
Sma3	Pyrimidine metabolism	00240	7.684e-18	%
Sma3	Glutathione metabolism	00480	7.684e-18	%
Sma3	Metabolic pathways	01100	7.684e-18	%

Source	Gene names
Sma3	At3g23580; At3g27060; At5g40942; CHLREDRAFT_144621; CHLREDRAFT_188785; GSVIVT00004599001; GSVIVT00004600001; GSVIVT00019890001; GSVIVT00023944001; GSVIVT00037857001; MDB19.6; MICPUCDRAFT_33344; MICPUCDRAFT_45157; MICPUN_91276; MICPUN_94589; MMG1.4; MOJ10.

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	GO:0004748	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	deoxyribonucleoside diphosphate metabolic process	GO:0009186	Biological Process	-
Sma3	ribonucleotide metabolic process	GO:0009259	Biological Process	-
Sma3	programmed cell death	GO:0012501	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonucleotide reductase	IPR000358	-	0.0	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27060.1	TSO2, ATTSO2 Ferritin/ribonucleotide reductase-like family protein chr3:9979971-9981057 REVERSE LENGTH=332	82%
RefSeq	Arabidopsis thaliana	NP_189342.1	Ribonucleoside-diphosphate reductase small chain C [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002328875.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACY5

Fln msg: your sequence is longer than subject: 330 - 289

Fln protein: MVVIAEEPLLVENPQRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSQDLPHWERLGSGERHFISHVLAFFAASDGIVLENLAGRFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLETYIKDSKEKDHLFRAIETVPCVAKKADWTLRWIDSSDSFAERVLAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLNHKLSEKRVKEIVCDAVEIEREFVCDALPCDLVGMNAKLMSQYIDFVADRLLVALGYSKVYNAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSGLGNMEGNHIFKLDADF*

Protein Length: 331

Fln nts: ATGGGCCCACCGGTCAGAGTCCACAGCTGAAGAAATAGAACCAAAGCAAACAACCAGGGGCACCAATTTAGTTCATCCTCTATTAGGTTTCGGTTTCGTTATCGCATCTGGGCACTGGGCTCTCTCTCCATTCTCGCCGAAACAAGTCTTTCCGTTTCAGATCAACA_-_ATGGTGGTTATTGCCGAAGAACCCCTTTTGGTAGAAAACCCACAGAGGTTTTGTATGTTTCCGATCAAATATCCTCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGGGAAAGATTGGGCTCTGGTGAAAGGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCTGCTTCTGATGGGATAGTTTTGGAGAATTTGGCTGGTCGCTTCATGAAAGAAGTTCAAGTTCCTGAGGCACGTGCATTTTATGGGTTCCAGATCGCAATAGAAAATATTCATTCAGAAATGTACAGTCTTTTGTTAGAGACTTACATCAAGGACTCTAAAGAGAAGGATCATTTGTTTCGTGCTATTGAGACTGTTCCCTGTGTTGCTAAGAAAGCAGACTGGACTCTTCGCTGGATTGATAGCTCTGATAGTTTTGCGGAAAGGGTTCTTGCGTTTGCTTGTGTGGAGGGTATATTTTTCTCTGGCAGCTTTTGTTCGATCTTCTGGCTGAAGAAAAGGGGTCTAATGCCCGGCCTAACTTTTTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGCGATTTTGCCTGCTTGCTCTACAGCTTGCTAAATCATAAACTCAGTGAAAAGAGAGTTAAGGAGATAGTCTGTGATGCTGTTGAGATTGAAAGGGAGTTTGTTTGTGATGCTCTCCCATGTGATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTACATCGACTTTGTTGCTGACAGGCTTCTGGTTGCATTGGGGTATAGCAAAGTGTATAATGCACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTCTTTGAAAAAAGAGTTGGAGAATACCAAAAGGCCTCTGTTATGTCTGGTTTGGGCAACATGGAGGGAAACCATATATTTAAATTGGATGCAGATTTTTGA___AATTTGATTAATTAGCCTCCCCATCTTGGGAGGGAAAGGATGGTGGCCCATTGTGCTTGTACAGAGATTTTCATTGAGTAAGGTTTTGATGGCGTTTGGAGTTTCAAAATCAATCCTATCTCTTCCATTGTTTTGATTAATTAGTTTGGGCTATTCCTTTAGGTCAAGGGTGGCCCTTTGTGCTTGTACAAAAGGTTTTTTTAATGAGAACGAACGCATTTGGAGTTTCAAAATTG

Fln Alignment:

Contig11417___EEVDLSQDLPHWERLGSGERHFISHVLAFFAASDGIVLENLAGRFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLETYIKDSKEKDHLFRAIETVPCVAKKADWTLRWIDSSDSFAERVLAFACVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLNHKLSEKRVKEIVCDAVEIEREFVCDALPCDLVGMNAKLMSQYIDFVADRLLVALGYSKVYNAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSGLGNMEGNHIFKLDADF
D5ACY5_______________EEVDLSQDLYQWVNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGSFAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKSKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMSQYIKFIADRLLVALGHGKMYHVENPFDWMDLISLQGKTNFFERRVGDYQKASIMSSISNAEGNHVFKMDEDF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1252		78		21	1.0
1267	90			9	1.0
1284		77		19	1.0
1307		10	89		1.0
1355	9			27	1.0
1364	80	20			0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain