SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11414

Length: 1089 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11414 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Marchantia polymorpha RepID=A7VM26_MARPO	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Putative leucine-rich repeat receptor-like kinase	-	-	7.061e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.142e-11	-
Sma3		EC:2.7.11.3-	-	6.812e-07	-

Source	Gene names
Sma3	AT1G31420; AT1G55610; AT1G72300; AT2G01950; AT2G02220; AT2G35620; AT3G13380; AT3G24550; AT4G39400; AT5G07280; AT5G53890; AT5G62710; At1g55610; At1g70460; At1g72300; At1g78530; At2g01950; At2g02220; At2g35620; At3g13380; At3g59110; At4g39400; At5g07280; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	peptide receptor activity	GO:0001653	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	steroid binding	GO:0005496	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	skotomorphogenesis	GO:0009647	Biological Process	-
Sma3	detection of brassinosteroid stimulus	GO:0009729	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	phloem transport	GO:0010233	Biological Process	-
Sma3	tapetal cell fate specification	GO:0010234	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	tapetal layer development	GO:0048658	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07280.1	EMS1, EXS Leucine-rich repeat transmembrane protein kinase chr5:2285088-2288666 FORWARD LENGTH=1192	74%
RefSeq	Arabidopsis thaliana	NP_196345.1	leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002322457.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: your sequence is shorter than subject: 285 - 360

Fln protein: VVTLVVKTNIIGDGGFGTVYKAMLPNGKMAAIKKLSQAKTQGHREFLAEMETLGKVKHRNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRADALEVLDWSKRFKIAMGAARGLAFLHHGFVPHIIHRDMKASNILLDGDFEPKVADFGLARIISACETHVSTDIAGTFGYIPPEYGQSCRSTTRGDVYSFGVILLELLTGKEPTGPEFRDIDGGNLVAWVHQMIKRGQPAETLDPMIFNGTSKQKMLKLLQVATMCTSDDPVKRPTMLQVVKFLKGAEECS*

Protein Length: 286

Fln nts: CGTCGTGACCTTGGTTGTCAAGACCAATATTATTGGAGATGGCGGGTTCGGGACAGTCTATAAAGCCATGCTTCCCAATGGAAAGATGGCTGCAATTAAGAAGCTAAGCCAGGCCAAGACTCAAGGACACAGGGAATTCCTTGCAGAGATGGAAACCTTGGGGAAAGTTAAGCACAGGAATCTAGTGCCACTTCTCGGATATTGCTCATTTGGGGAGGAAAAGTTGTTGGTATACGAGTATATGGTGAATGGAAGCCTTGATTTGTGGTTAAGGAACAGGGCAGATGCCCTAGAGGTTCTTGACTGGTCTAAACGTTTCAAAATTGCAATGGGAGCTGCGAGAGGTCTTGCGTTCCTTCATCATGGCTTCGTTCCTCACATTATTCATCGAGATATGAAAGCTAGCAACATCTTGTTGGATGGAGATTTTGAACCCAAGGTTGCTGACTTTGGATTGGCACGCATCATTAGTGCTTGCGAAACACATGTAAGTACTGATATTGCAGGCACATTTGGATACATTCCTCCTGAATATGGGCAGAGTTGTAGATCCACCACTAGAGGGGATGTGTACAGTTTTGGAGTGATACTGCTTGAACTTCTTACTGGAAAGGAGCCAACAGGACCAGAATTCAGAGATATAGATGGTGGAAATTTAGTGGCATGGGTCCATCAAATGATCAAAAGAGGCCAACCAGCTGAGACCCTAGATCCTATGATTTTCAATGGAACATCCAAGCAAAAGATGCTCAAGTTGTTGCAGGTGGCAACAATGTGCACTTCTGATGACCCTGTAAAGCGTCCTACAATGTTACAAGTTGTCAAGTTCTTGAAAGGCGCAGAAGAATGTTCATAG___AAGTGAACAAAATTGATTTGGTTTCTAATTTGTATATTCTGTATTTATTGGCATTCAACGACTGTCCAGGCATAGTTTTGAGGCTTGATCCTATTCCTTGTTTGGGCATAGCTTCTTTTTTCTAGAAACTTGATACTTAGAAGCAGGATCAATGACTTGCTTCACTGGACTTCTCATTGATATTGGGACTTCACTGGACTTCTCTATGTTTGTGTCTTTTTTATAAGTTGCTC

Fln Alignment:

Contig11414___TLVVKT------NIIGDGGFGTVYKAMLPNGKMAAIKKLSQAKTQGHREFLAEMETLGKVKHRNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRADALEVLDWSKRFKIAMGAARGLAFLHHGFVPHIIHRDMKASNILLDGDFEPKVADFGLARIISACETHVSTDIAGTFGYIPPEYGQSCRSTTRGDVYSFGVILLELLTGKEPTGPEFRDIDGGNLVAWVHQMIKRGQPAETLDPMIFNGTSKQKMLKLLQVATMCTSDDPVKRPTMLQVVKFLK
B8LPH3_______________TLLKKTLSLTNKDIIGTGGYGTVYKLVIDEHTVFAIKRLTRNSIDQQRGFERELDAMGDIKHRNVVTLRGYYSSSHVNLLVYDLMQNGSLDGILHSRSPNKVSLDWAARNKIALGSARGIAYLHHDCIPHIIHRDIKSSNILLDEEMEARISDFGLATLINPDQTHVSTIVAGTFGYLAPEYVETGRATEKGDVYSYGVVLLELITGKRPTDEAFVE-KGNNIVTWIRALVEDGCEEHAFDPDLVDVLTRREMKEAFIVAYNCLNQNPSERPTMAQVVKMLE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
721		55		44	1.0
939	25			75	0.996473
1010	33			66	1.0
1029	20			80	0.995493
1033		25		75	0.996473
1053	75		25		0.996473
1069	25		75		0.996473
1070			25	75	0.996473
1077	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain