SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11368

Length: 1388 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11368

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12854, PPR_1, PPR repeat	-	-	1.0e-07	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Pentatricopeptide, putative, expressed	-	-	2.5e-10	-

Source	Gene names
Sma3	57h21.3; At1g08070; At1g09410; At1g11290; At1g56690; At2g03880; At2g13600; At3g12770; At3g23330; At3g24000; At3g29230; At4g02750; At4g16835; At4g18750; B1032F05.19; B1080A02.28; DYW10; F14J9.7; F14O13.19; F25P12.87; F28A21.160; FCAALL.441; GSVIVT000001140

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 462 - 795

Fln protein: RRDLGCHSMYVKCGSTEAARLVFEKMPERNVVSWNAMIVGYAQNGHVEEAIGLFYQMQLGGLKPDLITWTTIIAGYAHNGNSDEALKFFHQMQLSGIKPNVISWTAIITGYAQSGDCDKALEYFREMELVGIRPDVISWNAMIAAYAQNSHWDEAMGFFHQMQIAGLTPNAVTIATTLTACANLAALQQGKEIHNYTIRTGIDKNSFVGSSLLDMYAKCGNIESARQVFDGIYDRNLVLWNAMIAGYAMHGHGDLSLRLFHQMQLEGIKPDHITFTGVLSACSHAGLVEEGQQYFEFMTREYHIAPTKEHYTCMVDLLGRAGCLAEAHDFVSKMPFEPDVCVWGALLGACRVHCNVEIGELAAEHLLKLDPENTGTYVLLSNIHAATGKRDNVARVRKMMKSMGLRKIPGCSWIEVKNRMHGFRVGDMSHPQTKEIYAMLESLTVQLKAAGYVPDTTFAYMR

Protein Length: 463

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTATGTCAAATGTGGTAGTACAGAGGCTGCACGCCTAGTATTTGAGAAAATGCCTGAACGAAATGTGGTCTCATGGAATGCTATGATTGTAGGTTATGCTCAGAATGGGCATGTTGAAGAGGCCATAGGGCTCTTCTACCAAATGCAGTTGGGAGGACTGAAGCCGGACCTGATTACATGGACCACGATTATTGCAGGCTATGCCCACAATGGGAATAGTGATGAGGCCTTGAAGTTTTTTCACCAAATGCAGTTATCAGGCATTAAGCCTAATGTTATCTCATGGACTGCTATTATTACAGGTTATGCCCAGAGTGGTGATTGTGACAAGGCCCTTGAGTACTTTCGTGAAATGGAATTGGTAGGCATAAGACCTGACGTGATCTCATGGAATGCCATGATTGCAGCTTATGCCCAAAACAGCCACTGGGACGAGGCCATGGGTTTCTTTCATCAAATGCAAATAGCAGGCTTGACGCCTAATGCAGTCACAATTGCAACGACACTTACTGCCTGTGCCAACTTAGCAGCTTTGCAACAGGGCAAGGAGATTCACAACTATACAATCAGAACGGGAATTGACAAGAACTCATTTGTGGGGAGTTCTCTTTTAGACATGTATGCCAAATGTGGGAATATCGAGAGTGCAAGACAAGTGTTTGATGGTATTTATGACAGAAATCTTGTTTTATGGAATGCAATGATTGCTGGTTATGCAATGCATGGGCATGGCGATCTTTCGCTCAGACTGTTTCACCAAATGCAACTGGAAGGCATAAAGCCAGACCACATCACTTTCACAGGTGTTCTGTCTGCATGCAGCCATGCAGGCCTTGTAGAGGAGGGTCAGCAGTATTTTGAATTTATGACTAGAGAGTATCACATTGCACCTACCAAGGAGCACTACACCTGTATGGTTGACCTTCTTGGTCGGGCAGGGTGTTTGGCAGAGGCTCATGACTTTGTTTCTAAGATGCCATTTGAGCCGGATGTTTGTGTCTGGGGTGCTTTGCTTGGTGCCTGCAGAGTCCATTGCAATGTTGAGATAGGAGAACTTGCAGCGGAACATCTTTTGAAGTTAGACCCTGAAAACACTGGTACTTATGTACTACTGTCAAACATCCATGCTGCAACAGGCAAGCGGGATAATGTAGCAAGAGTGAGAAAAATGATGAAATCCATGGGTTTAAGAAAGATTCCTGGATGTAGCTGGATTGAGGTCAAGAACAGAATGCATGGGTTCCGTGTGGGAGACATGTCACACCCACAGACAAAGGAAATATATGCTATGCTGGAGAGCTTGACTGTGCAGCTAAAGGCAGCAGGATATGTACCTGACACAACCTTTGCTTATATGAGATG

Fln Alignment:

Contig11368___GCHSMYVKCGSTEAARLVFEKMPERNVVSWNAMIVGYAQNGHVEEAIGLFYQMQLGGLKPDLITWTTIIAGYAHNGNSDEALKFFHQMQLSGIKPNVISWTAIITGYAQSGDCDKALEYFREMELVGIRPDVISWNAMIAAYAQNSHWDEAMGFFHQMQIAGLTPNAVTIXXXXXXXXXXXXXQQGKEIHNYTIRTGIDKNSFVGSSLLDMYAKCGNIESARQVFDGIYDRNLVLWNAMIAGYAMHGHGDLSLRLFHQMQLEGIKPDHITFTGVLSACSHAGLVEEGQQYFEFMTREYHIAPTKEHYTCMVDLLGRAGCLAEAHDFVSKMPFEPDVCVWGALLGACRVHCNVEIGELAAEHLLKLDPENTGTYVLLSNIHAATGKRDNVARVRKMMKSMGLRKIPGCSWIEVKNRMHGFRVGDMSHPQTKEIYAMLESLTVQLKAAGYVPDTTFA
B8LQA8_______________GLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP----KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1093	87		12		0.992554
1300	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain