SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11366

Length: 799 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11366 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat protein kinase n=1 Tax=Populus trichocarpa RepID=B9HD01_POPTR	-	-	6.0e-13	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Leucine-rich repeat protein kinase	-	-	7.367e-11	-

Source	Gene names
Sma3	AT2G26330; AT5G07180; At2g26330; At5g07180; ER; ERECTA; ERL2; GSVIVT00032282001; GSVIVT00038499001; LRR-RLK; OSJNBa0016O19.39; Os06g0130100; Os06g0203800; OsI_09151; OsI_21484; OsJ_08587; OsJ_19993; P0493C11.1; P0538C01.27; PK3; POPTRDRAFT_763171; POPTRDR

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell adhesion	GO:0030155	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26330.1	ER, QRP1 Leucine-rich receptor-like protein kinase family protein chr2:11208367-11213895 REVERSE LENGTH=976	1.0e-15	56%
RefSeq	Arabidopsis thaliana	NP_180201.1	LRR receptor-like serine/threonine-protein kinase ERECTA [Arabidopsis thaliana]	2.0e-15	56%
RefSeq	Populus trichocarpa	XP_002309462.1	leucine-rich repeat protein kinase [Populus trichocarpa]	3.0e-16	58%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
372	83		16		0.994512
664	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain