SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11321

Length: 841 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11321 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mutant Niemann-Pick C1 [Felis catus]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	75%
Sma3	Cholesterol transport protein	-	-	3.335e-09	-

Source	Gene names
Sma3	AT4g38350; F22I13.120; GSVIVT00002883001; GSVIVT00036266001; H0409D10.4; OSJNBb0078D11.11; OsI_16991; OsJ_15793; PHYPADRAFT_113528; PHYPADRAFT_132440; POPTRDRAFT_721264; POPTRDRAFT_818865; RCOM_0512970; RCOM_1601160; T8D8.3; VITISV_009389; VITISV_038862;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	cholesterol transport	GO:0030301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38350.2	Patched family protein chr4:17958324-17966846 REVERSE LENGTH=1297	67%
RefSeq	Arabidopsis thaliana	NP_195548.6	Patched family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002307793.1	cholesterol transport protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
4	80			20	0.995493
7	20			80	0.995493
335		86	13		0.999973
338	86		13		0.999973
342	86		13		0.999973
343		13		86	0.999973
344	86	13			0.999973
345	13	86			0.999973
346	13			86	0.999973
353	87	12			0.999964
354	87		12		0.999964
380	85		14		0.999981
385	71	7	21		1.0
387		23	76		1.0
424			10	90	0.90298
425	10			90	0.90298
426		90	10		0.90298
431	10	90			0.90298
434		10	90		0.90298
438	90		10		0.90298
443	90	10			0.90298
448	90		10		0.90298
450		11	88		0.923564
459		87		12	0.992554
465			14	85	0.993533
466	14			85	0.993533
472	37		62		1.0
474		12		87	0.992554
475	12			87	0.992554
477			12	87	0.992554
478			12	87	0.992554
479		87		12	0.992554
486	87	12			0.992554
497		85		14	0.993533
498		85	14		0.993533
499	14	85			0.993533
500	85		14		0.993533
503	12		87		0.992554
504		12		87	0.992554
505	12			87	0.992554
507		12		87	0.992554
513		87		12	0.992554
515	12			87	0.992554
518			12	87	0.992554
519	12			87	0.992554
719		83		16	0.994512
720			16	83	0.994512
723		83	16		0.994512
727		16		83	0.994512
730			16	83	0.994512
732	83			16	0.994512
735	83	16			0.994512
737	60	20	20		0.99255
739	80		20		0.995493
744	75		25		0.996473
746	75	25			0.996473
748	75	25			0.996473
749		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain