SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11309

Length: 1918 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11309

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Monodehydroascorbate reductase n=1 Tax=Mesembryanthemum crystallinum RepID=Q93YG1_MESCR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	0.0	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52880.2	ATMDAR1, MDAR1 monodehydroascorbate reductase 1 chr3:19601477-19604366 REVERSE LENGTH=466	65%
RefSeq	Arabidopsis thaliana	NP_190856.1	monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002326252.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH7

Fln msg:

Fln protein: MAAKSFKYIILGGGVAAGYAAREFVKLGVKSGELAIISKEAVAPYERPALSKAYLFPQGAVRLPGFHVCVGSGGERQLPEWYTEKGIELILGTEVVKAEIATKTLTSAEGTTFKYDTLIIATGSTVIKLSEFGVQGADAKGIFYLREIAEADALVSVIQSKPEGTAVVVGGGYIGLELAAVLKINKYKVKMVCPEPGFMPRLFTADIASFYEGYYKGKTVDIIKGRAAGFSTDEHGNVKMVKLKSGRELEADIVVVGVGARPLTGLFKGQLQEEKGGIKTDGSFRTSVPDVYAVGDVAAFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGRIVEEYDYLPYFYSRSFDLSWQFYGDNVGESVIFGDNNPATSKAKFGSYWIKDGRVVGVFLESGTPEENKAIAKVARVKPLVESKEELIKDGLAFASKISSAFT*

Protein Length: 440

Fln nts: TCAGCAGCATCGCTGCTATAGCCCTTGTTTTCATTTTAAATCATCTAGATCAAGAATCTTCTTAACTCTTCATAAATTAATCAGTTGAAAGGAAATATAGCGATCTCTCGAATTGTATATTCATGCTTTCAATTCTTTTCATAGAATATCCGTTCACCGATTTTAATTTAGTTTATTCGAAAGAGGTTTAAGTTCTTACTCCTTTAGAAGGAATTGATTCCGAAGCTCTCATTAATTTAGTTTATTCGAAAGAGGTTTAAGTTCTTATTCCTTTAGAAGGAACTGATTCCGAGTCTGACTGCTTCATCGCATCTTCTGCCCAGCCACAGCCGCCACGGTCAACTCTATTCAAGAGTTTTGTTTGCTCTCAATCTTCTTCGACCAGCAAACAGTTCTTGAGTTCCCTCGGTTCTGTGCAGATTCATTCGATCAAACATTGCA_-_ATGGCGGCAAAATCTTTCAAGTATATTATTCTGGGAGGTGGCGTTGCAGCTGGTTATGCAGCCAGAGAATTTGTTAAGTTGGGTGTCAAATCTGGAGAGCTCGCAATTATATCAAAAGAGGCTGTAGCTCCATATGAAAGACCTGCACTTAGCAAAGCTTATCTCTTTCCGCAAGGAGCTGTGCGACTTCCGGGCTTCCATGTCTGTGTTGGGAGTGGAGGAGAGAGGCAGCTTCCGGAATGGTATACTGAGAAAGGTATAGAGTTGATTCTTGGTACTGAAGTGGTGAAAGCTGAAATTGCCACCAAAACTCTCACTAGCGCAGAAGGGACTACTTTCAAATATGACACTTTAATCATTGCAACTGGTTCCACTGTTATCAAGTTATCTGAGTTCGGCGTGCAAGGAGCTGATGCCAAGGGCATCTTTTATCTGAGAGAGATTGCTGAAGCTGATGCCTTGGTATCTGTAATACAGTCAAAACCAGAGGGCACAGCTGTGGTTGTTGGTGGAGGCTATATTGGGCTTGAACTTGCTGCAGTCCTAAAAATCAACAAATATAAAGTTAAAATGGTGTGCCCCGAGCCAGGGTTCATGCCTCGTCTTTTCACTGCAGACATAGCTTCTTTCTATGAGGGCTATTATAAAGGAAAGACTGTGGATATTATCAAGGGAAGGGCCGCAGGATTCAGCACTGATGAGCATGGAAATGTTAAGATGGTAAAGCTGAAGAGTGGCAGGGAACTGGAGGCAGATATTGTTGTTGTTGGTGTTGGAGCAAGACCTTTGACAGGCCTTTTCAAAGGTCAGCTTCAGGAGGAAAAGGGTGGCATTAAGACGGATGGTTCCTTCAGAACTAGTGTTCCTGATGTTTATGCGGTAGGAGACGTGGCAGCTTTCCCTATGAAGATTTATGGGGACATTAGAAGAGTCGAACATGTTGATCATGCTAGGAAATCAGCAGCACAAGCCGTACAGGCAATTAAAGCCAAAGAAGAAGGAAGGATCGTTGAAGAATATGACTATCTTCCATATTTTTATTCACGTTCATTTGATTTATCATGGCAATTCTATGGAGACAATGTAGGTGAATCCGTTATTTTCGGTGACAATAATCCTGCGACATCGAAAGCCAAATTTGGATCATATTGGATAAAAGATGGTAGGGTGGTAGGTGTATTCTTGGAGAGTGGTACTCCTGAAGAAAACAAAGCTATTGCTAAGGTAGCACGTGTGAAGCCTTTGGTTGAAAGCAAGGAGGAACTGATAAAGGATGGGCTGGCATTTGCTTCTAAGATATCCTCGGCTTTCACTTAA___ATCGGCTTTCTGTTAATTCATCAGCATGCTGCATTACTGTTGGTCTCTGTTCACCTTGGATATATCTGTTGTTTTAGCGTCTGATTGACTTTTGTTATGAGATATTGGATTTGACTTTTGTTATGAGGCATTGGACTTTTAGTCCGGGTGTAGCTACTTC

Fln Alignment:

Contig11309___MAAKSFKYIILGGGVAAGYAAREFVKLGVKSGELAIISKEAVAPYERPALSKAYLFPQGAVRLPGFHVCVGSGGERQLPEWYTEKGIELILGTEVVKAEIATKTLTSAEGTTFKYDTLIIATGSTVIKLSEFGVQGADAKGIFYLREIAEADALVSVIQSKPEGTAVVVGGGYIGLELAAVLKINKYKVKMVCPEPGFMPRLFTADIASFYEGYYKGKTVDIIKGR-AAGFSTDEHGNVKMVKLKSGRELEADIVVVGVGARPLTGLFKGQLQEEKGGIKTDGSFRTSVPDVYAVGDVAAFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGRIVEEYDYLPYFYSRSFDLSWQFYGDNVGESVIFGDNNPATSKAKFGSYWIKDGRVVGVFLESGTPEENKAIAKVARVKPLVESKEELIKDGLAFASKI
A9NUH7_______________MAEKFFKYVIVGGGVAAGYAAREFVKLGLKSGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGIGGERQLPEWYSEKGIELILSTEVVKAEIASKTLTTAEGTTFKYDTLIIATGSTVIKLSDFGVQGADAKGIFYLREIAEADALVSAIQSKPEGTAVIVGGGYIGLELAAVLRINKYKVKMVYPEPWCMPRLFTADIAAFYEGYYRGKGVEIIKGTVATGFVTDEHENVKIVKLKDGRELEADIVVVGVGGRPLTGLFKGQLEEEKGGIKTDGFFKTSVPDVYAVGDVATFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGKSFEEYDYLPYFYSRSFDLSWQFYGDNVGEAIIFGDNNPATPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKVARLKPLVESKEELIKDGLAFASKI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
936	90		10		0.90298
978		11		88	0.923564
1002		11		88	0.923564
1004	88			11	0.923564
1005	88			11	0.923564
1007		12		87	0.992554
1065		12		87	0.992554
1146		12		87	0.992554
1233	90			10	0.90298
1326	85		14		0.993533
1604			93	6	0.99903
1748	25	75			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1199	1210	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain