SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11308

Length: 1784 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11308 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein DnaJ [Medicago truncatula]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20560.1	DNAJ heat shock family protein chr2:8848353-8849815 REVERSE LENGTH=337	68%
RefSeq	Arabidopsis thaliana	NP_179646.1	DNAJ heat shock protein-like protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002329800.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLM7

Fln msg:

Fln protein: MGVDYYNVLKVGRNATDEDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDSQKRQIYDQYGEEGLKGQVPPPGAGGSSPFANGAGGPNIFSTFNPRNAEDVFADFFGSSSPFGNFTSMGSRNSRFQDGTFGGFTGTENMFRSFGEAVPAGPRKAPPVENKLPCSLEELYNGSTRKMKISRNIVDASGRSMPVEEILTIEVKPGWKKGTKITFPEKGNEQPNVVPADLVFVIDEKPHSVYKRDGNDLVVTQKISLVEALTGCTVNLTTLDGRNLSIPITEVVNPGTEKVVPNEGMPIGKEHGRKGNLRIKFDIKFPTRLTADQKAGLKRLLGG*

Protein Length: 343

Fln nts: CCCTCTGCCCCTTATCTTCACCCTTTGTGAGGAATATGGGGCTTGCAACCGAGCTTAGATTGCATTTTGATTTGTGCATTTGCAAATTCTTTACAGAGTGCCTGTGTTTCCTGTCTGTACAAAGTTAAGTTTTAGCTATTGGTAAGGGTTCTGTTCAGAGGAGGTTTAGAGTTCTTGTCTGATCTGTAAAGGT_-_ATGGGGGTCGACTACTATAATGTATTGAAGGTGGGACGGAATGCGACGGACGAAGATCTCAAGAAGGCCTACAGGAAATTGGCTATGAAATGGCATCCCGACAAGAATCCCAATAATAAGAAGGAGGCCGAGGCCAAGTTCAAGCAAATTTCTGAAGCATACGAGGTTCTTAGTGACAGTCAAAAGAGACAAATTTATGATCAGTATGGGGAAGAAGGACTGAAGGGACAGGTTCCTCCTCCTGGTGCTGGTGGTTCGTCACCGTTCGCTAATGGAGCGGGTGGACCAAATATATTCTCAACATTTAATCCCAGGAATGCAGAAGATGTTTTTGCTGACTTCTTTGGTAGTTCAAGTCCTTTTGGGAACTTTACTAGTATGGGTTCAAGAAACTCAAGGTTTCAAGATGGAACGTTCGGTGGATTTACTGGTACTGAAAATATGTTTAGATCCTTTGGTGAGGCAGTTCCAGCAGGTCCTCGCAAGGCGCCCCCCGTGGAAAACAAGCTGCCTTGCTCATTGGAAGAGCTTTATAATGGCTCAACAAGGAAAATGAAAATATCAAGAAACATTGTTGATGCTAGTGGAAGATCAATGCCTGTCGAGGAGATTCTGACAATTGAAGTTAAACCTGGATGGAAGAAAGGAACAAAAATCACTTTTCCAGAAAAAGGAAATGAGCAGCCAAATGTTGTTCCTGCTGATCTAGTGTTTGTGATTGACGAGAAACCTCACAGTGTTTACAAGAGGGACGGTAATGACCTGGTAGTTACACAAAAGATATCTCTTGTGGAAGCCCTTACAGGTTGTACGGTGAACTTGACTACTTTGGATGGGAGAAATCTAAGCATTCCAATTACTGAGGTTGTAAATCCGGGAACTGAAAAGGTAGTTCCAAATGAAGGAATGCCCATTGGAAAAGAGCATGGACGGAAAGGAAACCTTCGAATCAAATTTGACATTAAGTTCCCAACAAGGCTAACTGCTGATCAAAAAGCTGGTTTAAAGAGGCTTCTTGGAGGTTAA___AAACTGAACCGCTTAATAATGATAATGGCTAGTGCATTTGTTAATTTTTTCAACAACTTGAAGAATATTGAAAATAGTTGTTCCTAAGAGACAAGGAATGTTAGTAATCAAAGTCTGGGTTTGACAGACTTGTTCCATAAGGGAGCCATTGGTTTGGACTTCAATCTTATACCCGGACACGAATTCTACTGTCCTGGATGCTTTGACTGTAAACTGTAATTTGGTTGCACAATGCATTGGCTTAAAATTTGAGTTAGCCTGAGATTGTACATTCCTGCACATAAATATTTATAGTTAAACTACTACTTTTTGCTGTGGTATGATAATGTGCATTGCTGCATTTTTCAGATGCAGAAGTGATCTGCTTTCAGTACTGTCCTTTGTTTAATTTACATTCTTTAAAAGGGTAAGTTTAAAGAGACTTGCCACCACATGCTTACATTAAAGTGTCATTAGTAATTGAGCTTTTTTCGCTGGGAACGACTGATTTCCTGGCATGCTCAGATTTGTACAAGTTGCAGTTTCCAGAAATTGTAATCCTAATTCTGGTTTTGAATGTAAAGTT

Fln Alignment:

Contig11308___MGVDYYNVLKVGRNATDEDLKKAYRKLAMKWHPDXXXXXXXXXXXXXKQISEAYEVLSDSQKRQIYDQYGEEGLKGQVXXXXXXXXXXXXXXXXXPNIFSTFNPRNAEDVFADFFGSSSPFGNFTSMGSRNSRFQDXXXXXXXXTENMFRSFGEAVPAGPRKAPPVENKLPCSLEELYNGSTRKMKISRNIVDASGRSMPVEEILTIEVKPGWKKGTKITFPEKGNEQPNVVPADLVFVIDEKPHSVYKRDGNDLVVTQKISLVEALTGCTVNLTTLDGRNLSIPITEVVNPGTEKVVPNEGMPIGKEHGRKGNLRIKFDIKFPTRLTADQKA
B8LLM7_______________MGVDYYNVLNVGRNATEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDNQKRQIYDQYGEEGLKGQVPPPAAGGSSPFSNGGGGPNIF-TFNPRNAEDVFAEFFGSSSPFGGFTSMGSRNSRFQEGMMGGT----EMFRSFSEAAPAGPRKAAPVENKLPCSLEELYNGSTRKMKISRNIVDASGKSMSVEEILTIEVKPGWKKGTKITFPEKGNQQPNVVPADLVFVIDEKPHNVYKRDGNDLVVTQKISLVEALTGGMVNLTTLDGRNLSIPITDIVNPGTEKVVPNEGMPIGKEHGRKGNLRVKFDIKFPTRLTAEQKA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1695	92	8			0.999718
1723			82	5	0.999919
1725	73	26			1.0
1726	73	26			1.0
1727		26		73	1.0
1743	80	20			0.995493
1744	66		16		0.988813
1746		40	20		1.0
1747	20	80			0.995493
1748		80		20	0.995493
1749		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain