SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11303

Length: 1178 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11303

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Response to dessication RD2 n=1 Tax=Jatropha curcas RepID=D6BR58_9ROSI	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21620.2	RD2 Adenine nucleotide alpha hydrolases-like superfamily protein chr2:9248749-9249986 FORWARD LENGTH=193	60%
RefSeq	Arabidopsis thaliana	NP_850015.1	adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002306112.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRA3

Fln msg:

Fln protein: METSMEVEEHRWKDVNLPAPFKKQLEPELERETGERRRGRNIMVSVDHGPLSKHAFDWAIVHLCRMADTLHLVHVVSNADDEVLFAATQALMERLAIEAYEVAMVQTEARILEGDVGKAICREAERIKPAALVMGTRGRGIIKSVLQGSVSEYCFHHCSCPVVIVPPRESGDQSVI*

Protein Length: 178

Fln nts: ATGGGGGCAGATCTTTCCCATCTGAATATATTCGTTTAGAGTCTGATCAAAGTGGAGAAAGGGAAAAATACCTGAAAGAGCTAGTGATCTAAAAAACCTTGCAATTCAATTCAATCAGGGGTGAAGTATTTACAGGCAAGT_-_ATGGAAACAAGTATGGAGGTTGAGGAGCATCGATGGAAAGATGTAAATCTGCCAGCCCCCTTTAAGAAGCAGCTGGAGCCAGAGCTAGAAAGAGAGACAGGAGAAAGAAGAAGAGGGCGTAACATTATGGTCAGCGTAGATCACGGGCCTCTTAGCAAACATGCATTTGATTGGGCCATTGTACATCTCTGTCGCATGGCCGATACACTCCATCTTGTTCACGTTGTTTCCAATGCGGATGACGAGGTGCTGTTTGCAGCCACACAAGCTCTAATGGAAAGACTTGCAATAGAAGCATATGAAGTTGCCATGGTACAAACAGAAGCTAGGATTTTGGAGGGTGACGTAGGCAAGGCAATTTGCCGTGAAGCTGAAAGAATCAAGCCCGCTGCACTTGTAATGGGAACAAGAGGCAGGGGAATAATTAAGAGTGTATTGCAAGGGAGTGTGAGTGAGTACTGCTTCCATCATTGTAGCTGCCCTGTAGTGATTGTTCCTCCCAGAGAGTCTGGAGACCAATCAGTAATATAG___AAATCTCTCCAAAGGTCCATTTCACATGGACATCAGGAAGCATATTTGTATTTGGTATGATTTTAGTGCCACTTTCAAGTGATGGTGGACTGATCTAAATTGATTTTATGTAGAAATTGATTGTATGTATGTGTCGAGCACAAATGGTTGTAAACTAGCTGACCAAGCCGGACTGGTCTAATCATTGTATTTTGGTTTTCATAAGTTGTATATTCCACTTCTGAACTGTTTCAGATGAAGTTTGTTGTCCTAGCCATCATATGGGTTTTTCTAGGCCAATATGTTGGTACCATGTCTGCTTTAGATCAAGCTTGAGTACTCATAAAAATATTAGAAATTGTTTGAAGCCTTAGAACAAATGCCTGTATAATTGAATCATTTGGTATTTTCTTTTGGGGCTAACGTAGAATAAGACAGTTGTCGTGTTTTCTAAATAATGGAAGAATTTTAAATTTCACGATGTAATTTATCTATTGATTAACTTCAGCCAAATCAGGGAATGCCTG

Fln Alignment:

Contig11303___METSMEVEEHRWKDVNLPAPFKKQXXXXXXXXXXXXXXXXNIMVSVDHGPLSKHAFDWAIVHLCRMADTLHLVHVVSNADDEVLFAATQALMERLAIEAYEVAMVQTEARILEGDVGKAICREAERIKPAALVMGTRGRGIIKSVLQGSVSEYCFHHCSCPVVIVPPRESGDQSVI
A9NRA3_______________METIVENEEHKWKEVNLPAHLKQQPEPELERETGERRRGRDILVSVDHGPQSKHAFDWAIAHLCRMADTLHLVHVVTNSDDEVLFGATQALMERLAIEAYEVAMVKTEARIMEGDVGKAICREAVRIKPAALVMGTRGRGIIKSVLQGSKSEYCFHHCSCPVVIVPPKEAGDQSVI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
174	16		83		0.994512
795		11		88	0.999937
895		8		91	0.999807
909		15		84	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain