SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11295

Length: 1102 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11295

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Glutathione S-transferase GSTU6	-	-	1.863e-40	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	1.324e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.324e-37	%

Source	Gene names
Sma3	AT1G10360; At1g10360; At1g59670; At1g59700; B1064G04.4; B1144D11.26; B1147A04.22; B1147A04.23; Dcarg-1; ERD9; F23H11.1; GST; GST 18; GST1a; GST1b; GST2; GST29; GST30; GST30b; GSTU6; GSTa; GSVIVT00000141001; GSVIVT00008584001; GSVIVT00008591001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, omega-class	IPR005442	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G59670.1	ATGSTU15, GSTU15 glutathione S-transferase TAU 15 chr1:21930035-21931228 FORWARD LENGTH=233	48%
RefSeq	Arabidopsis thaliana	NP_176176.1	glutathione S-transferase TAU 15 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002311870.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2P9

Fln msg:

Fln protein: MGGTHMQEKRITSEKTDFITMEGCGEDGQVKLLGVIRSPFVARVRIALALKGIHYEFIEEDIPNNKSELLLQSNPVHKKIPVLIHNGKPVCESIIIVQYIEEAWDSKAPFLMPRDPYDLAVARFWAAFIDDKVFPSIVGAFRGQGEEQQKAVEESVANLLLLEEVLRSTGKENFGGDEIGLVDIALGGLLVLIQTVEKVTNIVIIDTQKMPLLSAWADQFCKADKVKNALPDRTELFVFLSARRAQLTSSPPGN*

Protein Length: 256

Fln nts: _-_ATGGGAGGTACACATATGCAAGAGAAACGCATTACATCTGAAAAAACAGATTTCATAACAATGGAGGGTTGTGGAGAAGACGGGCAAGTGAAGCTGTTAGGTGTGATTCGCAGTCCCTTCGTGGCACGGGTTCGCATAGCACTTGCTCTTAAAGGGATCCATTATGAGTTCATTGAAGAGGACATCCCCAACAACAAGAGCGAGCTGCTACTGCAATCAAACCCTGTTCACAAGAAGATTCCAGTGCTCATCCACAACGGCAAGCCTGTTTGTGAATCCATCATTATTGTGCAATATATCGAGGAGGCATGGGACAGTAAAGCGCCATTTCTGATGCCCAGAGATCCATATGACCTAGCCGTTGCCCGCTTCTGGGCTGCCTTCATAGACGATAAGGTCTTTCCAAGTATTGTAGGAGCTTTCAGGGGCCAGGGTGAGGAGCAACAGAAAGCGGTTGAAGAATCGGTGGCAAACCTTCTTTTGTTGGAGGAAGTGTTGCGAAGTACCGGAAAAGAGAATTTTGGAGGAGATGAGATAGGGTTGGTTGACATCGCATTGGGCGGGCTATTGGTACTCATCCAAACGGTGGAGAAGGTTACCAATATAGTTATAATCGACACACAAAAAATGCCGCTATTAAGTGCATGGGCTGACCAATTTTGTAAAGCCGACAAAGTGAAAAATGCGTTGCCCGATCGGACCGAGTTATTTGTATTCCTGTCCGCGAGGAGAGCGCAGCTGACATCATCACCCCCTGGCAATTAG___AAAGGAGGTGGCTGACAGATAACTAAAATAATATTTAAGATAGCTAAAATAATAATATTTAGATAGTAGGTGTTGTCGTTGGTCTTGTTGTGTGTTGTGTTTCGATGTTGCGAGACAGAACGCTGGATTTATGTATCAGGTGAGCTTATACTCCTGCAGAATTGTTGGGTAATAAAGCTGCCGGGGGATTTCAGTGCAATAATATTATTATATAGGTTACTGTTCACTTCGGTCATTGGAACAATGGAGTTATGCTTGATGTGAATTATCATTCGGGGGCTATTTAGTTTCCCTGTGTTTATCTTTATGAATATATTCAGTAAAATCATGTTTATTT

Fln Alignment:

Contig11295___MEGCGEDGQVKLLGVIRSPFVARVRIALALKGIHYEFIEEDIPNNKSELLLQSNPVHKKIPVLIHNGKPVCESIIIVQYIEEAWDSKAPFLMPRDPYDLAVARFWAAFIDDKVFPSIVGAFRGQGEEQQKAVEESVANLLLLEEVLRSTGKENFGGDEIGLVDIALGGLLVLIQTVEKVTNIVIIDTQKMPLLSAWADQFCKADKVKNALPDRTELFVFLSARRAQLTSSP
A9P2P9_______________MEACGEEGQVKLLGNTRSSFVVRVRIALALKGIHYEFIEENTPT-KSQLLLQSNPVHKKIPVLIHNGRPVCESMIIVQYIEETWDTKAPNLMPKDPYDRAIARFWTAFVEDKLVLSILGVFNGHGEQQLKAAEESVANFLLLEEVLQTTGKAYFGGDEIGLVDISLGGILVFTKTLEKVTNIVLIDTDKMPQLSAWVDRFSNADGVKEVLPDRGEIFELITGWRAKLTSPP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
403		75	25		0.996473
406	75			25	0.996473
408		25		75	0.996473
412		25	75		0.996473
415		25	75		0.996473
416			75	25	0.996473
417	75			25	0.996473
455		83		16	0.994512
930			11	88	1.0
989	20	10	10	60	0.999999
992	25	75			0.996473
993			33	66	0.997452
994	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain