SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11291

Length: 2934 nt

UniGene Fasta

>sp_v3.0_unigene11291
ATGGGGGACGCTTCCTTCTTCGATAAATAGATGATTAAAAATAAATGACATGGGATATGAAACATGACTTTAATTAAAGAAAGGAAAATGAAAGGGGGGCCTTGGCACAAACATCGTAAAATCCGCCCTGTAAATGCTGCATAGCTAACCTGACACTGCTTCGCGCATGTGTGGTATGCATTCTTAGGGTTTGTTTATCCTTCATTCACGTGTTCTGTGAATTCTCTGTAGAGGTATGTTAGCCTCCTTCACCTGGCCGATGAGTCCCGCTACTGAAGATCAGTTGCTTTCGATGAGCAAGGTTTTAAATTTTGCTTAAGTTTCTTAAGTTACTGGCCAGATGCAAGCAACCCAACTGTGCCCTTGTTGCAGTCATCATTAAAAGCAGATTCTCTGGCATCTGTCCAGCAATAAACCCTGTTCACAAAGATGAATGCCTACATTGTTGGCATCCTTGTGCCTGTGCTGCTATCATTCGTGTTAAGGAACAGAAGAAAGGGAAAGGTATATGGAGTGCCTGTGGATGTGGACGGGGATGGTGGTTTTGCAATCCGACACCATCGCAGTTCTTCCTTAGTTGAAACGCCGTGGGAAGGAGCTTCAACTCTTGCGGACCTCTTTGAGCAAGCATGCAAAAGACATGCACAAATGCGCTTACTCGGAACCCGAAAGCTGATTAGCAGAGAAATGAAAGTCAGTGAAGATGTGCAGGATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCGGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTCATGATGACTCATGGAAATATTGTAGCGACAGTTGCTGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATTCTTGAACTAGAGGCTGAGGCTGTAATGGTTGCTTCAGGAATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGTTGGGTCCAACATTGATGACTGCTGTACCGGCTATTTTAGATCGTGTCAGGGATGGTGTGAGGAATAAGGTTGAGACAACTGGTGGAGTTGCAAAGAAATTGTTTAATATAGCATATAGCCGTAGGTTGGCTGCTATGGAAGGAAGTTGGCTGGGGGCATGGGGTCCAGAGAAGTTTTTCTGGGATGTACTAGTTTTTAAAAAGATACGTGCAGTTCTTGGAGGCCATATCCGTGGTTTACTTTCTGGTGGGGCCCCTCTTTCAGCAGATACGCAACGATTCATCAACATCTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTTCCTATGTTAAGCTGATTGATTGGGAAGAAGCTGGGTATTTGACATCAGATTCACCAATGCCACGAGGAGAGATAGTTATTGGTGGTCCCCATGTAACTCTGGGCTATTTCAAGAACAAAGAGAAAACTGACGAGTCCTACAAGGTGGACGAGAGAGGAATGCGATGGTTCTATACTGGTGACATAGGGAGATTTCATCCTGATGGCTGCCTTGAGATTATTGACCGTAAAAAGGACATAGTTAAGCTTCAACATGGAGAATATGTTTCTTTGGGCAAGGTTGAAGCAGCTCTGGCATTGTGCCATTATTTGGACAATATCATGTTACATGCAGATCCATTCCACAATTATTGTGTGGCTCTTATTGTTCCATCCCATCAAGCCCTCGAGAGTTGGGCTCAGAAAGAAGGAATTGCTTACAAGGATTTTGCAGACCTGTGTCAGAAGAGCGAAGCAATTAAAGAAGTTCAGAGCTCAATTTTACAGGCTGCAAAGGGTGCAAAGCTTGATAAATTTGAAACTCCTTCAAAGATCATGTTACTTCCTGATCCATGGACACCAGAATCTGGTCTTGTGACAGCAGCACTTAAGTTGAAGCGAGAAGTTATAAAGAAGACCTTTGCTGAAGAGCTGAATAAACTGTATAGTTGAATAGCACTATTGAGCATGGATTACGGCGAGGGATTACTGTCGTTGAATTTGGGGACAATGAAAAAGTTTGAAAAACATGATAAAATTTGTCCGTGCAAGGAGAATTTAGCCCAATGCAGTGGCTAAGATCATACTCGGTAAATGTAGATGGTATTTTAAATATGCTCTAAAAACACTCTTCGGTGAGGAATTTAACTACGCATTTTCTCCCAGTTGAACTTCTGTTCTCATTTGCCGCTGCTATACTGGCTTTTGTTACAATCAAAGCTAATGATTGCAATGCATGAACATCAATAATTTTGGAATTCCTGCAACGATTAAGATACTTCCTGATCCATGGACACCTGAGGCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCGAAAAGTTATAAAGGCCTTCTCTGAAAAACAATATAAATCGTATGGTTAAATTAAGGGTCTTTAAGCATGGATTATGATGAGGAATTTAGTCCTTGTTAGTCATAGATAGTATTTTAAATATGCTCAAGAACTATTCAGCGAGGAATTGATTAATTCACGTTCTTCTAGCTGTAGTGTCTTGTGTAATTTTTGCTGTTGCTATACTTCCTTTTTATTGTAATCAAATATTGGTATTTCTAATGTTTCTTTTTACCACCTGTTCAGTGAGATATTTAATGACCCGGGAAAACTTTCTTATTTGCTGTAACGTTATTGCCTTGTCATATTATAATAAAAACGAACACCAACAAAAA

Ace file of the UniGene sp_v3.0_unigene11291

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] sp\|Q9CAP8.1\|LACS9_ARATH RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic gb\|AAG51668.1\|AC010704_12 putative acyl-CoA synthetase; 62297-59022 [Arabidopsis thaliana] gb\|AAM28876.1\|AF503759	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Long-chain-fatty-acid CoA ligase, putative	-	-	4.621e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	9.038e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		9.038e-17	%
Sma3	Metabolic pathways	01100		9.038e-17	%

Source	Gene names
Sma3	At1g77590; At2g04350; GSVIVT00015387001; GSVIVT00029070001; LACS8; LACS9; LOC_Os11g06880; LOC_Os12g07110; OSJNBa0065C11.10; OSTLU_24496; Os05g0317200; Os11g0169800; Os12g0168700; OsI_19441; OsI_35270; OsI_37613; OsJ_18037; OsJ_33112; OsJ_35359; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Lipocalin	IPR002345	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77590.1	LACS9 long chain acyl-CoA synthetase 9 chr1:29148501-29151776 REVERSE LENGTH=691	74%
RefSeq	Arabidopsis thaliana	NP_177882.1	long chain acyl-CoA synthetase 9 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002302236.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACR7

Fln msg: your sequence is longer than subject: 589 - 197

Fln protein: MNAYIVGILVPVLLSFVLRNRRKGKVYGVPVDVDGDGGFAIRHHRSSSLVETPWEGASTLADLFEQACKRHAQMRLLGTRKLISREMKVSEDVQDVIYMEDEGITSEPSLSGGSSSWTVSSMSRVERLGRESPVDADLPVAADIAVIMYTSGSTGLPKGVMMTHGNIVATVAAVMTIVPGLSNKDIYLAYLPLAHILELEAEAVMVASGIAIGYGSTLTLTDTSSKIKKGTKGDASMLGPTLMTAVPAILDRVRDGVRNKVETTGGVAKKLFNIAYSRRLAAMEGSWLGAWGPEKFFWDVLVFKKIRAVLGGHIRGLLSGGAPLSADTQRFINICFGAPIGQGYGLTETCAGATFSEWDDMTVGRVGPPLPCSYVKLIDWEEAGYLTSDSPMPRGEIVIGGPHVTLGYFKNKEKTDESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALALCHYLDNIMLHADPFHNYCVALIVPSHQALESWAQKEGIAYKDFADLCQKSEAIKEVQSSILQAAKGAKLDKFETPSKIMLLPDPWTPESGLVTAALKLKREVIKKTFAEELNKLYS*

Protein Length: 590

Fln nts: ATGGGGGACGCTTCCTTCTTCGATAAATAGATGATTAAAAATAAATGACATGGGATATGAAACATGACTTTAATTAAAGAAAGGAAAATGAAAGGGGGGCCTTGGCACAAACATCGTAAAATCCGCCCTGTAAATGCTGCATAGCTAACCTGACACTGCTTCGCGCATGTGTGGTATGCATTCTTAGGGTTTGTTTATCCTTCATTCACGTGTTCTGTGAATTCTCTGTAGAGGTATGTTAGCCTCCTTCACCTGGCCGATGAGTCCCGCTACTGAAGATCAGTTGCTTTCGATGAGCAAGGTTTTAAATTTTGCTTAAGTTTCTTAAGTTACTGGCCAGATGCAAGCAACCCAACTGTGCCCTTGTTGCAGTCATCATTAAAAGCAGATTCTCTGGCATCTGTCCAGCAATAAACCCTGTTCACAAAG_-_ATGAATGCCTACATTGTTGGCATCCTTGTGCCTGTGCTGCTATCATTCGTGTTAAGGAACAGAAGAAAGGGAAAGGTATATGGAGTGCCTGTGGATGTGGACGGGGATGGTGGTTTTGCAATCCGACACCATCGCAGTTCTTCCTTAGTTGAAACGCCGTGGGAAGGAGCTTCAACTCTTGCGGACCTCTTTGAGCAAGCATGCAAAAGACATGCACAAATGCGCTTACTCGGAACCCGAAAGCTGATTAGCAGAGAAATGAAAGTCAGTGAAGATGTGCAGGATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCGGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTCATGATGACTCATGGAAATATTGTAGCGACAGTTGCTGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATTCTTGAACTAGAGGCTGAGGCTGTAATGGTTGCTTCAGGAATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGTTGGGTCCAACATTGATGACTGCTGTACCGGCTATTTTAGATCGTGTCAGGGATGGTGTGAGGAATAAGGTTGAGACAACTGGTGGAGTTGCAAAGAAATTGTTTAATATAGCATATAGCCGTAGGTTGGCTGCTATGGAAGGAAGTTGGCTGGGGGCATGGGGTCCAGAGAAGTTTTTCTGGGATGTACTAGTTTTTAAAAAGATACGTGCAGTTCTTGGAGGCCATATCCGTGGTTTACTTTCTGGTGGGGCCCCTCTTTCAGCAGATACGCAACGATTCATCAACATCTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTTCCTATGTTAAGCTGATTGATTGGGAAGAAGCTGGGTATTTGACATCAGATTCACCAATGCCACGAGGAGAGATAGTTATTGGTGGTCCCCATGTAACTCTGGGCTATTTCAAGAACAAAGAGAAAACTGACGAGTCCTACAAGGTGGACGAGAGAGGAATGCGATGGTTCTATACTGGTGACATAGGGAGATTTCATCCTGATGGCTGCCTTGAGATTATTGACCGTAAAAAGGACATAGTTAAGCTTCAACATGGAGAATATGTTTCTTTGGGCAAGGTTGAAGCAGCTCTGGCATTGTGCCATTATTTGGACAATATCATGTTACATGCAGATCCATTCCACAATTATTGTGTGGCTCTTATTGTTCCATCCCATCAAGCCCTCGAGAGTTGGGCTCAGAAAGAAGGAATTGCTTACAAGGATTTTGCAGACCTGTGTCAGAAGAGCGAAGCAATTAAAGAAGTTCAGAGCTCAATTTTACAGGCTGCAAAGGGTGCAAAGCTTGATAAATTTGAAACTCCTTCAAAGATCATGTTACTTCCTGATCCATGGACACCAGAATCTGGTCTTGTGACAGCAGCACTTAAGTTGAAGCGAGAAGTTATAAAGAAGACCTTTGCTGAAGAGCTGAATAAACTGTATAGTTGA___ATAGCACTATTGAGCATGGATTACGGCGAGGGATTACTGTCGTTGAATTTGGGGACAATGAAAAAGTTTGAAAAACATGATAAAATTTGTCCGTGCAAGGAGAATTTAGCCCAATGCAGTGGCTAAGATCATACTCGGTAAATGTAGATGGTATTTTAAATATGCTCTAAAAACACTCTTCGGTGAGGAATTTAACTACGCATTTTCTCCCAGTTGAACTTCTGTTCTCATTTGCCGCTGCTATACTGGCTTTTGTTACAATCAAAGCTAATGATTGCAATGCATGAACATCAATAATTTTGGAATTCCTGCAACGATTAAGATACTTCCTGATCCATGGACACCTGAGGCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCGAAAAGTTATAAAGGCCTTCTCTGAAAAACAATATAAATCGTATGGTTAAATTAAGGGTCTTTAAGCATGGATTATGATGAGGAATTTAGTCCTTGTTAGTCATAGATAGTATTTTAAATATGCTCAAGAACTATTCAGCGAGGAATTGATTAATTCACGTTCTTCTAGCTGTAGTGTCTTGTGTAATTTTTGCTGTTGCTATACTTCCTTTTTATTGTAATCAAATATTGGTATTTCTAATGTTTCTTTTTACCACCTGTTCAGTGAGATATTTAATGACCCGGGAAAACTTTCTTATTTGCTGTAACGTTATTGCCTTGTCATATTATAATAAAAACGAACACCAACAAAAA

Fln Alignment:

Contig11291___MPRGEIVIGGPHVTLGYFKNKEKTDESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALALCHYLDNIMLHADPFHNYCVALIVPSHQALESWAQKEGIAYKDFADLCQKSEAIKEVQSSILQAAKGAKLDKFETPSKIMLLPDPWTPESGLVTAALKLKREVIKKTFAEELNKLY
D5ACR7_______________MPRGEIVIGGPHVTLGYFKNKEKTDESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVCHYLDNFMLHADPFHSYCVALVVPSRQALESWAQKEGIIYKDFSDLCQKSEAIKEVQSSILEVGKSAKLDKFEIPSKIKLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLY

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
161	16			83	0.994512
165		66	33		1.0
171		16		83	0.994512
305			83	16	0.994512
686			83	16	0.994512
689	66	16	16		0.988813
694	83	16			0.994512
696	83	16			0.994512
697	16		83		0.994512
698		16		83	0.994512
699	16	83			0.994512
701			83	16	0.994512
704	83		16		0.994512
706			80	20	0.995493
713	25		75		0.996473
715	25	75			0.996473
720		33	66		1.0
721	83	16			0.994512
725		25		75	0.996473
726	75		25		0.996473
727		33		66	0.997452
729		33		66	0.997452
986	25	75			0.996473
987	75			25	0.996473
988	75		25		0.996473
989	75			25	0.996473
1658	16	83			0.994512
1660	83		16		0.994512
1661			16	83	0.994512
1662			16	83	0.994512
1718	87		12		0.992554
2425	10			90	0.90298
2465	96	3			0.988939
2466			3	96	0.988939
2567		2		93	0.985381
2776	3			90	0.997073

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain