SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11264

Length: 520 nt

UniGene Fasta

>sp_v3.0_unigene11264
GTGGGGACCAGATGCTTCCGAATTCAAGCCGGAGAGATTCATGGAGGAGGAACATGTGAATTTAACAGATCAATCAGACTTCCGTATGATTCCATTTGGGGCAGGAAGGAGAGGATGCCCGGGGGCTCCCATGGCTATTCCTACCATTGAATTCGCATTGGCTCAGCTGATGCACACTTTCGATTGGAGAGTTGAAGGTGATCCGTCGCAGCTGGATATGACGGAAGTGTGTGGGCTGACCATCCCAAGGAAAGTGCCGCTGTATGCATATCCAAGTTTGAGGGTAAGCTTTCCAGTTCCGCAACAGACCAGCGATGATAAAGCGTAGGATGAGGCAAGGCACCGCCACATGCTATTCTAGTTTCTCAGAAATGCTTTCGTTACTCGCTATTTTAATCTAGTTTACGCTAGTTCCGTTCCCTTTCATTGCATTACCTGTTGTACGTTCTGTGATAGATATCATATCGACATATGATTAGCGTTGTATTTTTGAAGTCTAAAAACTATTTTCTGTCGTACT

Ace file of the UniGene sp_v3.0_unigene11264

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome p450 (Fragment) n=6 Tax=Pinus RepID=B0ZQH8_PINTA	-	-	2.0e-33	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	Gene names
Sma3	CYP750A1; GSVIVT00015950001; GSVIVT00015956001; cyp450;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G30750.1	CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 chr2:13099486-13101389 REVERSE LENGTH=503	2.0e-20	48%
RefSeq	Arabidopsis thaliana	NP_180633.2	cytochrome P450 71A12 [Arabidopsis thaliana]	2.0e-20	48%
RefSeq	Populus trichocarpa	XP_002323081.1	cytochrome P450 [Populus trichocarpa]	2.0e-20	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS63

Fln msg: your sequence is shorter than subject: 109 - 526

Fln protein: WGPDASEFKPERFMEEEHVNLTDQSDFRMIPFGAGRRGCPGAPMAIPTIEFALAQLMHTFDWRVEGDPSQLDMTEVCGLTIPRKVPLYAYPSLRVSFPVPQQTSDDKA*

Protein Length: 110

Fln nts: GTGGGGACCAGATGCTTCCGAATTCAAGCCGGAGAGATTCATGGAGGAGGAACATGTGAATTTAACAGATCAATCAGACTTCCGTATGATTCCATTTGGGGCAGGAAGGAGAGGATGCCCGGGGGCTCCCATGGCTATTCCTACCATTGAATTCGCATTGGCTCAGCTGATGCACACTTTCGATTGGAGAGTTGAAGGTGATCCGTCGCAGCTGGATATGACGGAAGTGTGTGGGCTGACCATCCCAAGGAAAGTGCCGCTGTATGCATATCCAAGTTTGAGGGTAAGCTTTCCAGTTCCGCAACAGACCAGCGATGATAAAGCGTAG___GATGAGGCAAGGCACCGCCACATGCTATTCTAGTTTCTCAGAAATGCTTTCGTTACTCGCTATTTTAATCTAGTTTACGCTAGTTCCGTTCCCTTTCATTGCATTACCTGTTGTACGTTCTGTGATAGATATCATATCGACATATGATTAGCGTTGTATTTTTGAAGTCTAAAAACTATTTTCTGTCGTACT

Fln Alignment:

Contig11264___WGPDASEFKPERFMEEEHVNLTDQSDFRMIPFGAGRRGCPGAPMAIPTIEFALAQLMHTFDWRVEGDPSQLDMTEVCGLTIPRKVPLYAYPSLRVSFPV
C0PS63_______________WGAYASDFKPERFMENEHINLTDQSDFSMIPFGSGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSRLDMKEACGLTIPRQVPLCAYPSLRVSFPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain