SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11260

Length: 1995 nt

UniGene Fasta

>sp_v3.0_unigene11260
ATCATGGGCAGAGGATTATGTATTTACGGCCGGATCTGTGTGAACATCACAGGCAGATGATTGTGTAATCACAGCCGGATCTGTGTGAACAGCACAGGCAGAGGATTGGTATTCAACAAAGTTCGCTTTTTGGGGTTTTTGAAACGTTTAATTGGCTGAATTGTTTAAATATGACGGCGAATTTTGGTCGGTGGGAAGCCGATCCTTTTTTCTCAGCTGCCGAGGATGTGCAAGACTCCGCTGACAGGTTGGAATCCGCATACAGAAGTTGGGTGTCTGCTCGGAACGCGACAGACACAGATCCAAGTTACGGTGAGAATTTGGACAATTCAGTTGATATTCTGAGACGGGAGCTACAGACCGCCCTTGGCACTGCCAAATGGCAGCTGGATGAGTTTGAAAGGGCTGTAAAGTCAAGTTACCTGGGGAGAGATGTAGATGCAAGCGACAGGCATAAACAGTTTGTTATGGCCATCCAGAGTCAACTATGTGGCATAGAAAAAGCCATGAGTGATTCAGTTATTGATGAAGGCAAGAAACGTCTCCGATGGGTACAACTTGATGATCACGAGAAGGATGATTTGGCCTTGTTTCTTTGTGGACCCTGCGAGAATAACAACAACTCTTTGGAACAACAGCATGTTAACACAACAGCAGAAATGGTGGACTGGAGACTTGAGGACGCACACATGTTGAATAGAAGTGAGTTAAGAGACATTTGTCATGCCGAAAGTGACTGTGGTCCTGATGTCAATGGTTATAAAGAAACCATTTTGATCAACAAGGACTCCAAGTTTGTAGTACAATTGGCTGAACAAAATGTTGCTGACAGTCAGGATGATTGGCATACTGGAGCTACTATAGACAGAAAAAGTGGGCACAGGAGAAGTTCAAGTGATGGAGCTGTCCTTGGTTCTTGGAAAATTGTAATTGCTGATGAAAACGATGAAAAAGAAATTATTGAATCCCAGTCAAAAGAATCTCCGACTAGATTGAATTTGTGGGATTTGACAAACAAGCTGGGATTGGCAGCCAAGTTAAAGTGGTCCAAGAGTGGCCTAAAGAGGTGGAAGGATAGTGTTCATTGTCATCTTGGTAATGAGTATATTACGGACCTGGGTATGAATACATGGTTGAGAGGTAACAAAAAAATAACTAATGGGGAGTGTGATTCTTATGACAACATTCTCAATCATAAACAATCCTGTGGCTGGGCTGGAGCACTTCAAAGGAAGGTGCAGAGGTCTCAGTACTGCATCCAGTACAGTCACCCCTTACAAATAACTTGGATGCTTATTATAATGCTCTGTCTAGTAGGTCTCTTCACATTTCTTGTAAACTAAAATGCCGTCGGGGAAGGTGTCTTTCACAAATGACGGGATTCAATTATTAAATGGTTGCTTATTTTGGAGTCCAAGAAGCTGGGGCAGTGTGTACATTAATTTCATGGGGTGGTATCCTACCACTGGAATCAGTAGCCAGAGAGCAACAGATGAATTGTTCACAGAGTGAGCAAATAAGAGATGTCTTTTACTTCACATTTGTGACTAACTCTGTAACCCTGTAACAGAGGTTACAGAGTTTTATTTCCACAGCACTTTGGGAGCAGAACCAAAGTTCTAGGAATATGATTAACTCTGTAAGAGAGGCTACAGAGTTTTATCTCCACAGCACTTTGGGAGTAGAACCAAAGTTCTAGGAATGTAATTGTGATGATGTTATAACAAAAGTTGTGCCCATGTCTATCTGCCATATTCAAGAGTATGTGTCTTTGTCAAGATTCATTTTTGACATATTTTTGTGTATTTTAATAGAAGGCTATTTAATAAAAGTCATTTTAAAATTTCGTGAATACTGATCCCTTTTGAAAATCATCTCCGAAATGGTAACGCATAACATGTATCCAGAAAAAAACCGTTTCTTCATATCTGTTGAAGATAAAAAAAAACTAATTATCTTTCTGCTGCTTAACCTGTCTACTGACTTGCAGATGGC

Ace file of the UniGene sp_v3.0_unigene11260

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Syntaxin/t-SNARE family protein [Arabidopsis thaliana] gb\|AAK96588.1\| At1g27700/T22C5_14 [Arabidopsis thaliana] gb\|AAM19970.1\| At1g27700/T22C5_14 [Arabidopsis thaliana] gb\|AEE30866.1\| Syntaxin/t-SNARE family protein [Arabidopsis thaliana]	-	-	2.0e-31	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At2g18860; GSVIVT00014933001; PnH10-12;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	Golgi vesicle transport	GO:0048193	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Syntaxin 6, N-terminal	IPR015260	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC62

Fln msg: your sequence is longer than subject: 391 - 278

Fln protein: MTANFGRWEADPFFSAAEDVQDSADRLESAYRSWVSARNATDTDPSYGENLDNSVDILRRELQTALGTAKWQLDEFERAVKSSYLGRDVDASDRHKQFVMAIQSQLCGIEKAMSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGPCENNNNSLEQQHVNTTAEMVDWRLEDAHMLNRSELRDICHAESDCGPDVNGYKETILINKDSKFVVQLAEQNVADSQDDWHTGATIDRKSGHRRSSSDGAVLGSWKIVIADENDEKEIIESQSKESPTRLNLWDLTNKLGLAAKLKWSKSGLKRWKDSVHCHLGNEYITDLGMNTWLRGNKKITNGECDSYDNILNHKQSCGWAGALQRKVQRSQYCIQYSHPLQITWMLIIMLCLVGLFTFLVN*

Protein Length: 392

Fln nts: ATCATGGGCAGAGGATTATGTATTTACGGCCGGATCTGTGTGAACATCACAGGCAGATGATTGTGTAATCACAGCCGGATCTGTGTGAACAGCACAGGCAGAGGATTGGTATTCAACAAAGTTCGCTTTTTGGGGTTTTTGAAACGTTTAATTGGCTGAATTGTTTAAAT_-_ATGACGGCGAATTTTGGTCGGTGGGAAGCCGATCCTTTTTTCTCAGCTGCCGAGGATGTGCAAGACTCCGCTGACAGGTTGGAATCCGCATACAGAAGTTGGGTGTCTGCTCGGAACGCGACAGACACAGATCCAAGTTACGGTGAGAATTTGGACAATTCAGTTGATATTCTGAGACGGGAGCTACAGACCGCCCTTGGCACTGCCAAATGGCAGCTGGATGAGTTTGAAAGGGCTGTAAAGTCAAGTTACCTGGGGAGAGATGTAGATGCAAGCGACAGGCATAAACAGTTTGTTATGGCCATCCAGAGTCAACTATGTGGCATAGAAAAAGCCATGAGTGATTCAGTTATTGATGAAGGCAAGAAACGTCTCCGATGGGTACAACTTGATGATCACGAGAAGGATGATTTGGCCTTGTTTCTTTGTGGACCCTGCGAGAATAACAACAACTCTTTGGAACAACAGCATGTTAACACAACAGCAGAAATGGTGGACTGGAGACTTGAGGACGCACACATGTTGAATAGAAGTGAGTTAAGAGACATTTGTCATGCCGAAAGTGACTGTGGTCCTGATGTCAATGGTTATAAAGAAACCATTTTGATCAACAAGGACTCCAAGTTTGTAGTACAATTGGCTGAACAAAATGTTGCTGACAGTCAGGATGATTGGCATACTGGAGCTACTATAGACAGAAAAAGTGGGCACAGGAGAAGTTCAAGTGATGGAGCTGTCCTTGGTTCTTGGAAAATTGTAATTGCTGATGAAAACGATGAAAAAGAAATTATTGAATCCCAGTCAAAAGAATCTCCGACTAGATTGAATTTGTGGGATTTGACAAACAAGCTGGGATTGGCAGCCAAGTTAAAGTGGTCCAAGAGTGGCCTAAAGAGGTGGAAGGATAGTGTTCATTGTCATCTTGGTAATGAGTATATTACGGACCTGGGTATGAATACATGGTTGAGAGGTAACAAAAAAATAACTAATGGGGAGTGTGATTCTTATGACAACATTCTCAATCATAAACAATCCTGTGGCTGGGCTGGAGCACTTCAAAGGAAGGTGCAGAGGTCTCAGTACTGCATCCAGTACAGTCACCCCTTACAAATAACTTGGATGCTTATTATAATGCTCTGTCTAGTAGGTCTCTTCACATTTCTTGTAAACTAA___AATGCCGTCGGGGAAGGTGTCTTTCACAAATGACGGGATTCAATTATTAAATGGTTGCTTATTTTGGAGTCCAAGAAGCTGGGGCAGTGTGTACATTAATTTCATGGGGTGGTATCCTACCACTGGAATCAGTAGCCAGAGAGCAACAGATGAATTGTTCACAGAGTGAGCAAATAAGAGATGTCTTTTACTTCACATTTGTGACTAACTCTGTAACCCTGTAACAGAGGTTACAGAGTTTTATTTCCACAGCACTTTGGGAGCAGAACCAAAGTTCTAGGAATATGATTAACTCTGTAAGAGAGGCTACAGAGTTTTATCTCCACAGCACTTTGGGAGTAGAACCAAAGTTCTAGGAATGTAATTGTGATGATGTTATAACAAAAGTTGTGCCCATGTCTATCTGCCATATTCAAGAGTATGTGTCTTTGTCAAGATTCATTTTTGACATATTTTTGTGTATTTTAATAGAAGGCTATTTAATAAAAGTCATTTTAAAATTTCGTGAATACTGATCCCTTTTGAAAATCATCTCCGAAATGGTAACGCATAACATGTATCCAGAAAAAAACCGTTTCTTCATATCTGTTGAAGATAAAAAAAAACTAATTATCTTTCTGCTGCTTAACCTGTCTACTGACTTGCAGATGGC

Fln Alignment:

Contig11260___MSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGPCENNNNSLEQQHVNTTAEMVDWRLEDAHMLNRSELRDICHAESDCGPDVNGYKETILINKDSKFVVQLAEQNVADSQDDWHTGATIDRKSGHRRSSSDGAVLGSWKIVIADENDXXXXXXXXXXXXPTRLNLWDLTNKLGLAAKLKWSKSGLKRWKDSVHCHLGNEYITDLGMNTWLRGNKKITNGECDSYDNILNHKQSCGWAGALQRKVQRSQYCIQYSHPLQITWMLIIMLCLVGLFTFLV
D5AC62_______________MSDSVIDEGKKRLRWVQLDDHEKDDLALFLCGSCENNSNSLEQQSVNKTEEMVDLRLDDAHMLNRRDLRDFCNVGSDCGPGVNGYKETILINKDSKFVVQLAEQNVADSHDDWHTGATIDRKSGHRGSSSDGAVLGSWKIVIADENDEKETVESQSKESPARLNLWDLTNKLGLAAKLKWSKSGLKRWKDSGHCHPGNEYIRDLGMKTWLRGNKKMTNGECVSYDNILSHKLTYGWAGSLQRKMQRSQYCIQYSRPLQITWMLLIMLCLVGLFTFHV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
13	33		66		0.997452
14			66	33	0.997452
15	66		33		0.997452
287		25		75	0.996473
525		80	20		0.995493
663	12		87		0.992554
707		87	12		0.992554
723		87	12		0.992554
1148	14		85		0.993533
1205		25		75	0.996473
1271		75		25	0.996473
1272		66	33		0.997452
1392	25		75		0.996473
1438	20		80		0.995493
1736		92		7	0.999602
1827		11		88	0.923564
1844			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain