SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11258

Length: 1474 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11258

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin-like arabinogalactan protein 12 n=1 Tax=Gossypium hirsutum RepID=A9XTL7_GOSHI	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Fasciclin-like arabinogalactan protein 10	-	-	1.217e-12	-

Source	Gene names
Sma3	At2g45470; At3g60900; At4g12730; F4L23.2; FLA; FLA10; FLA12; FLA13; FLA19; FLA2; FLA8; GSVIVT00026257001; GSVIVT00029095001; GSVIVT00033374001; OJ1695_A02.4; OSJNBa0019K04.16; Os04g0574200; Os09g0248100; OsI_17056; OsI_30524; OsJ_15854; OsJ_28509; P0499G1

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Thr operon leader peptide	IPR011720	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60900.1	FLA10 FASCICLIN-like arabinogalactan-protein 10 chr3:22499573-22500841 REVERSE LENGTH=422	46%
RefSeq	Arabidopsis thaliana	NP_191649.1	fasciclin-like arabinogalactan protein 10 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002320736.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR3

Fln msg: your sequence is longer than subject: 465 - 409

Fln protein: MEGILQLHFAALIVSVLAVTCHAHNITSILAGYPEFSLFRDYLTRTKVADDINTRTTITVLVVDDASMPAASLLGLGLETAQHVMSLHVLLDYLDSTKLHSITSGSMLSTTLFQTTGLAEDMTGLLNITDLKGGVVAFEVPGSNTVEATFVKSIYSDPYNISVVQISNMMSPPGLLTPAVPASSVNISTLLANTGHTVFARLITTAGVLDTYQEIVDGGLTVFAPIDGAFDGAMTEIQKLSRAQLVSMLEYHARPVYSPLGTLKSTNGDVVTTVATNGAERYLLTVGLNGDSVILGTGVNSAAITSTLLDDQPLVVFSIDKVLKPSEIFATSAPHHAPSHVPTRTPALRSHVPAPTPALRSHVPAPTPALGSPVPISSAPSPVSSASPPVSSPPAAVPRPSHHVFTPPAPPVESPLSSPAPGLAPTNDNAPSPSAEKSSAFRVSIGVFTLIPVVIYYMVFGCIF*

Protein Length: 466

Fln nts: GTTTTTCCCTCGCCTAGCAGAAGTGGTGCGTGAGATTCCCGTAGCGGGCAAC_-_ATGGAGGGAATTCTGCAACTGCATTTTGCAGCTCTCATTGTAAGCGTGCTTGCCGTTACCTGTCACGCTCACAACATCACAAGCATACTCGCTGGGTATCCAGAGTTTAGTCTCTTCAGAGACTATCTCACGCGCACAAAGGTGGCGGACGATATAAATACCCGGACGACCATCACTGTCCTGGTCGTCGACGATGCTTCCATGCCAGCGGCTTCGCTGCTAGGTCTCGGGCTCGAAACCGCTCAGCACGTTATGAGCCTGCACGTTCTCCTCGACTACCTCGACTCCACGAAGCTTCATTCCATCACCAGCGGCAGCATGCTGTCGACGACGCTGTTCCAGACGACGGGCCTCGCAGAGGACATGACGGGGCTTCTCAACATAACGGATCTCAAAGGTGGCGTCGTCGCCTTCGAGGTCCCGGGTTCGAATACCGTCGAGGCCACATTTGTGAAGTCTATTTATTCCGACCCCTACAACATTTCCGTCGTCCAGATTAGCAATATGATGTCGCCGCCGGGGCTGCTGACGCCTGCCGTTCCGGCCTCCTCCGTGAATATTTCCACCCTGCTGGCCAACACTGGGCACACCGTCTTTGCTCGGCTGATAACGACGGCGGGCGTGTTGGACACGTACCAGGAGATCGTCGACGGCGGGCTGACGGTTTTCGCACCCATTGACGGGGCCTTTGACGGTGCCATGACGGAGATCCAGAAGCTGTCGAGAGCTCAGCTGGTTTCCATGCTGGAATACCACGCGCGGCCCGTTTATAGCCCTCTCGGGACGCTGAAGTCCACTAATGGCGACGTCGTGACGACCGTCGCTACTAACGGTGCCGAACGTTATTTGCTGACTGTTGGCCTTAACGGCGACAGCGTTATTCTCGGCACCGGCGTCAACAGCGCCGCCATTACTAGTACTCTGCTTGACGACCAGCCGCTGGTGGTGTTCTCCATCGATAAGGTTCTGAAGCCGTCGGAGATTTTCGCCACATCTGCTCCGCATCACGCCCCGTCGCATGTGCCCACACGTACTCCCGCCCTCCGCTCGCATGTGCCCGCACCGACTCCTGCCCTCCGCTCGCATGTGCCCGCACCGACTCCTGCCCTCGGCTCGCCTGTGCCGATTTCTTCCGCTCCGTCACCTGTTTCTTCAGCCTCGCCGCCAGTTTCTTCTCCTCCCGCAGCAGTACCGAGACCATCGCATCACGTTTTTACGCCGCCAGCTCCGCCTGTGGAATCCCCGCTGTCTTCGCCAGCCCCCGGCTTGGCGCCCACCAACGACAACGCCCCGTCGCCGAGTGCGGAAAAATCTTCAGCATTTCGTGTCAGCATCGGCGTGTTTACGTTGATACCGGTGGTTATTTATTACATGGTGTTCGGCTGCATTTTTTAA___CTTGGGGTTACTGAAATGTTATTTATT

Fln Alignment:

Contig11258___LQLHFAALIVSVLAVTCHAHNITSILAGYPEFSLFRDYLTRTKVADDINTRTTITVLVVDDASMPAASLLGLGLETAQHVMSLHVLLDYLDSTKLHSITSGSMLSTTLFQTTGLAEDMTGLLNITDLKGGVVAFEVPGSNT-VEATFVKSIYSDPYNISVVQISNMMSPPGLLTPAVPASSVNISTLLANTGHTVFARLITTAGVLDTYQEIVDGGLTVFAPIDGAFDGAMTE-IQKLSRAQLVSMLEYHARPVYSPLGTLKSTNGDVVTTVATNGAERYLLTVGLNGDSVILGTGVNSAAITSTLLDDQPLVVFSIDKVLKPSEIFATSAPHHAPSHVPTRTPALRSHVPAPTPALRSHVPAP
A9NVR3_______________LGLGFAFLLLLSFLCSANAFNITKILAKYPEYSKFNHDLSQTKLADEINSRQTITVLALSNSQM--ASLSGLDLASLKRVLSLHVVLDFFDAKKLHEITNGTTLSTTLYQTTGNAPGNTGFINITDLKAGKVGFGPAAHGAKLDATYVKSVKQEGYNISVIEVSKPITTNVAEAPAPAPADVNITAVLIKGGCRIFATMISTTGVLKTFEDAVQGGLTVFCPTDAAFTGATNKLLKKLTSDDQVSVLEFHGLPIYSPLGTLKTTNGP-IRTMASPAARKYVLTVSSSGDTVILNTGVSKATISGTLLDDQPLAIFTVNKLLEPKELF-VAAPTPAPTPAPVEAPTPEAESPEATP--NSSPPAP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1405	69	30			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain