SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11249

Length: 3093 nt

UniGene Fasta

>sp_v3.0_unigene11249
GGTCTCAGGCTTTTATCATTTGGTCACGGCACTGATGCTTTATGGGTACCTGATCCCTATTTCGCTTTATGTTTCAATTGAAGTTGTAAAGATTCTGCAAGCATCGTTTATCAACCAAGACATCCATATGTATGATGAAGAGACGGGTACCCCTGCTCAAGCTCGGACTTCAAACTTGAATGAGGAGCTAGGACAGGTAGATACCATTCTCTCGGATAAAACAGGGACCCTAACTTGCAATCAGATGGATTTCATTAAGTGCTCAATTGCAGGTACTTCGTATGGTGTTGTAGCAAGCGAAGTTGAGATTGCAGCAGCAAAGCGGATAGCAAAGGATCTTAATGATCAGACTTTGAATCCACTAGATATCCAAAACTTTGATATTAAAAGCCAAGGTTTGAATGCATCAGAAAACAGTTTCAACAGCCCACGTTTTCAGGAGCCAGATATTGAACTGCGGATTGAGGGACCAGAGTCAACTGAAATGACTGAAAGACCTGCCATCAAGGGATTTAACTTCAAGGATGACCGGCTTATGAATGGGAACTGGTTGAAAGAACCGCATGCAGATATGCTTTTATTATTCTTCCGCATATTAGCAATCTGCCATACAGCCATTCCAGAACAAGATGAAGAGATTGGTACCATAAAATATGAAGCAGAATCACCAGATGAGGGGGCTTTTGTTGTTGCCGCAAGGGAGTTTGGTTTTGAGTTCTGCAAACGAACACAAACGAGTGTGCTGATCAAGGAATGGGATCCATCTTCTGGACAAAATATTGAGAGGGAGTACAAGCTGCTTAATCTATTGGAATTCAACAGCACACGCAAACGTATGTCTGTCATCGTGCGGGATGAGGATGGGCAGATCTTTCTACTTTGTAAAGGTGCAGATAGTGTTATCTTTGATAGACTTGGGAAGAATGGTAGAAATTATGAAGAGTCAACCCGTATGCATCTGGCACAATATGGAGATGCAGGATTGCGCACACTAGCCCTTTCCTATAGGACCATCACAGAAACAGAATATTCAGAGTGGAATGCAACATTTCTGAAGGCCAAGACTACTATTGGGGCAGACAGAGAAGCATTACTGGAAGTTGCGTCTGATTTGATTGAAAAGGATCTGATTCTTGTGGGTGCTACAGCTATAGAAGACAAACTACAGAAAGGGGTTCCTAGGTGTATAGACAAACTTGCACAAGCAGGTCTAAAGATTTGGGTGTTGACTGGTGATAAGATGGAGACTGCAATCAATATAGGATTTGCATGCAGTCTTCTTCGGCAAGGCATGAAACAAATTTGTCTGACTCTAAAAGGCATTGAATTTGGTAACCAAGATACCTCCACCAAGGCTGCAAAAGAAAGCATTATATTGCAAATGACGAATGCTTACCAGACAATAAGTCTGGAGATGAATCCTGATGCTGCTTTTGCTTTGATCATTGAGGGAAAAGCTTTGGCATATGCCTTAGAGGCCGACCTAAAAGATCAGTTTTTGCAACTGGCAATACTCTGTGCATCTGTAATCTGCTGTCGAGTTTCTCCCAAGCAAAAAGCCTTGGTCACAAGGCTGGTTAAAGAAGGCACTCATAAAACTACTCTGGCTATTGGTGATGGGGCTAATGATGTGGGCATGATTCAAGAAGCAGATATTGGTGTTGGTATTAGTGGTGTGGAAGGCATGCAGGCAGTCATGGCTAGTGATTTCTCTATTGCACAATTTCGATTTTTGGAGCGCTTGCTCGTGGTTCATGGACATTGGTGCTATAAGAGGATTGCACAGATGATCTGCTATTTCTTTTACAAAAATATATCTTTTGGGCTTACACTCTTCTACTTTGAAGCATATACAAGTTTCTCTGGACAGCCCATATATGATGATTGGTATATGTTGCTTTTCAATGTTATTTTGACATCACTGCCAGTCATATCTTTGGGGGTTTTTGAGCAGGATGTTTCATCTGAAGTATGTTTGCAGTTCCCTGCTCTCTATCAGCAGGGCCCAAGGAATATATTTTTTAACTGGTACCGTGTACTTGGATGGTTGGCAAATGGAGTTTATGTGTCTCTTATTACATTCTTTTTTAATATCGGTATCTTCCGAGATCAAGCATTTCGTGTTGGAGGGCAGACACCTGATATGGCAATTGTAGGAACAACCATGTTCACGTGTATCATCTGGACTGTCAATTGCCAGATTGCACTAGCTATCAGCCATTTTACATGGATACAACACCTTTTTATTTGGGGAAGTATTGGTCTGTGGTACATTGTGTTGCTCGTATATGGTATGATGTCTCCCATTATCTCAACAGATGCATTCCAAATCCTAACTGGAGTAGTTGGGCCTGCTGCTATGTACTGGTTAACTACAATTTTTATTGTACTTACTTCTCTTCTTCCATATTTTACACACTCTGCCTTTCAGAGAGCATTCAAACCCATGGATCATCATATTATTCAAGAAATTAAGTTTTTAAGGAAAGATGTCAATGATGTTAAGATGTGGTTCAGAGAGCGGGCAAAAGCCAAGCAAAAAACTAAAATAGGATTTTCAGCAAGAGTAGATGCAAAGATTCGAAATTTGAAGGAAAGGTTGCATAAAAAGCGTTCAGCTTTGTCCAGTCCTGATCTTGAGTAAGTTCACAATTTGCATGAAGTCAGCCCCAGAGTAGATGCAAACATCTGACATTTGAAGGAAACATTGCATGAAAACAGTTGGCCTTGTCCAGCCTTGTTACGGAAAGCCTACATTTTGCATGAAGCTACAAATTTGGACATGTTTTTGTAGAGTTGCAGATCTATACCATGAATGTTCTTTTACCGGCTTTTTTTGCCATTATTCTATTCATTTAGCCAAGGGCTCAAGATTTGTATTATTTCACAATTCAACTTTTGTACCATTACCGATGCGGCAGCAAGTTTTTGGAAGGTCTGCTGTGTATTTCAAAATATTTTAATTTTGAAGTACAAAAGGCAATTTGTCAAGACCAAGGTTCTATCTGCAAACTGATTCTGTAAATTGTAAAAGAGCTCATTGAATAACTTTCTAAGTATTTTCAGAAATGATGAGAATTTCTACTGTATGCT

Ace file of the UniGene sp_v3.0_unigene11249

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipid-transporting ATPase, putative n=1 Tax=Ricinus communis RepID=B9S5W0_RICCO	-	-	0.0	71%
FL-Next	sp=Putative phospholipid-transporting ATPase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Phospholipid-transporting ATPase, putative	-	-	4.656e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	-

Source	Gene names
Sma3	ALA1; ALA10; ALA11; ALA12; ALA2; ALA3; ALA4; ALA5; ALA6; ALA7; ALA8; ALA9; At1g13210; At1g17500; At1g26130; At1g54280; At1g59820; At1g68710; At1g72700; At3g13900; At3g25610; At3g27870; CHLREDRAFT_172401; CHLREDRAFT_190292; F14G11.10; F1L3.21; F20D21.10; F

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17500.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein chr1:6018757-6023201 FORWARD LENGTH=1216	70%
RefSeq	Arabidopsis thaliana	NP_173193.2	phospholipid-translocating ATPase [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002329063.1	aminophospholipid ATPase, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNQ4

Fln msg: your sequence is shorter than subject: 881 - 1216

Fln protein: VSGFYHLVTALMLYGYLIPISLYVSIEVVKILQASFINQDIHMYDEETGTPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFIKCSIAGTSYGVVASEVEIAAAKRIAKDLNDQTLNPLDIQNFDIKSQGLNASENSFNSPRFQEPDIELRIEGPESTEMTERPAIKGFNFKDDRLMNGNWLKEPHADMLLLFFRILAICHTAIPEQDEEIGTIKYEAESPDEGAFVVAAREFGFEFCKRTQTSVLIKEWDPSSGQNIEREYKLLNLLEFNSTRKRMSVIVRDEDGQIFLLCKGADSVIFDRLGKNGRNYEESTRMHLAQYGDAGLRTLALSYRTITETEYSEWNATFLKAKTTIGADREALLEVASDLIEKDLILVGATAIEDKLQKGVPRCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICLTLKGIEFGNQDTSTKAAKESIILQMTNAYQTISLEMNPDAAFALIIEGKALAYALEADLKDQFLQLAILCASVICCRVSPKQKALVTRLVKEGTHKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNISFGLTLFYFEAYTSFSGQPIYDDWYMLLFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNIFFNWYRVLGWLANGVYVSLITFFFNIGIFRDQAFRVGGQTPDMAIVGTTMFTCIIWTVNCQIALAISHFTWIQHLFIWGSIGLWYIVLLVYGMMSPIISTDAFQILTGVVGPAAMYWLTTIFIVLTSLLPYFTHSAFQRAFKPMDHHIIQEIKFLRKDVNDVKMWFRERAKAKQKTKIGFSARVDAKIRNLKERLHKKRSALSSPDLE*

Protein Length: 882

Fln nts: GGTCTCAGGCTTTTATCATTTGGTCACGGCACTGATGCTTTATGGGTACCTGATCCCTATTTCGCTTTATGTTTCAATTGAAGTTGTAAAGATTCTGCAAGCATCGTTTATCAACCAAGACATCCATATGTATGATGAAGAGACGGGTACCCCTGCTCAAGCTCGGACTTCAAACTTGAATGAGGAGCTAGGACAGGTAGATACCATTCTCTCGGATAAAACAGGGACCCTAACTTGCAATCAGATGGATTTCATTAAGTGCTCAATTGCAGGTACTTCGTATGGTGTTGTAGCAAGCGAAGTTGAGATTGCAGCAGCAAAGCGGATAGCAAAGGATCTTAATGATCAGACTTTGAATCCACTAGATATCCAAAACTTTGATATTAAAAGCCAAGGTTTGAATGCATCAGAAAACAGTTTCAACAGCCCACGTTTTCAGGAGCCAGATATTGAACTGCGGATTGAGGGACCAGAGTCAACTGAAATGACTGAAAGACCTGCCATCAAGGGATTTAACTTCAAGGATGACCGGCTTATGAATGGGAACTGGTTGAAAGAACCGCATGCAGATATGCTTTTATTATTCTTCCGCATATTAGCAATCTGCCATACAGCCATTCCAGAACAAGATGAAGAGATTGGTACCATAAAATATGAAGCAGAATCACCAGATGAGGGGGCTTTTGTTGTTGCCGCAAGGGAGTTTGGTTTTGAGTTCTGCAAACGAACACAAACGAGTGTGCTGATCAAGGAATGGGATCCATCTTCTGGACAAAATATTGAGAGGGAGTACAAGCTGCTTAATCTATTGGAATTCAACAGCACACGCAAACGTATGTCTGTCATCGTGCGGGATGAGGATGGGCAGATCTTTCTACTTTGTAAAGGTGCAGATAGTGTTATCTTTGATAGACTTGGGAAGAATGGTAGAAATTATGAAGAGTCAACCCGTATGCATCTGGCACAATATGGAGATGCAGGATTGCGCACACTAGCCCTTTCCTATAGGACCATCACAGAAACAGAATATTCAGAGTGGAATGCAACATTTCTGAAGGCCAAGACTACTATTGGGGCAGACAGAGAAGCATTACTGGAAGTTGCGTCTGATTTGATTGAAAAGGATCTGATTCTTGTGGGTGCTACAGCTATAGAAGACAAACTACAGAAAGGGGTTCCTAGGTGTATAGACAAACTTGCACAAGCAGGTCTAAAGATTTGGGTGTTGACTGGTGATAAGATGGAGACTGCAATCAATATAGGATTTGCATGCAGTCTTCTTCGGCAAGGCATGAAACAAATTTGTCTGACTCTAAAAGGCATTGAATTTGGTAACCAAGATACCTCCACCAAGGCTGCAAAAGAAAGCATTATATTGCAAATGACGAATGCTTACCAGACAATAAGTCTGGAGATGAATCCTGATGCTGCTTTTGCTTTGATCATTGAGGGAAAAGCTTTGGCATATGCCTTAGAGGCCGACCTAAAAGATCAGTTTTTGCAACTGGCAATACTCTGTGCATCTGTAATCTGCTGTCGAGTTTCTCCCAAGCAAAAAGCCTTGGTCACAAGGCTGGTTAAAGAAGGCACTCATAAAACTACTCTGGCTATTGGTGATGGGGCTAATGATGTGGGCATGATTCAAGAAGCAGATATTGGTGTTGGTATTAGTGGTGTGGAAGGCATGCAGGCAGTCATGGCTAGTGATTTCTCTATTGCACAATTTCGATTTTTGGAGCGCTTGCTCGTGGTTCATGGACATTGGTGCTATAAGAGGATTGCACAGATGATCTGCTATTTCTTTTACAAAAATATATCTTTTGGGCTTACACTCTTCTACTTTGAAGCATATACAAGTTTCTCTGGACAGCCCATATATGATGATTGGTATATGTTGCTTTTCAATGTTATTTTGACATCACTGCCAGTCATATCTTTGGGGGTTTTTGAGCAGGATGTTTCATCTGAAGTATGTTTGCAGTTCCCTGCTCTCTATCAGCAGGGCCCAAGGAATATATTTTTTAACTGGTACCGTGTACTTGGATGGTTGGCAAATGGAGTTTATGTGTCTCTTATTACATTCTTTTTTAATATCGGTATCTTCCGAGATCAAGCATTTCGTGTTGGAGGGCAGACACCTGATATGGCAATTGTAGGAACAACCATGTTCACGTGTATCATCTGGACTGTCAATTGCCAGATTGCACTAGCTATCAGCCATTTTACATGGATACAACACCTTTTTATTTGGGGAAGTATTGGTCTGTGGTACATTGTGTTGCTCGTATATGGTATGATGTCTCCCATTATCTCAACAGATGCATTCCAAATCCTAACTGGAGTAGTTGGGCCTGCTGCTATGTACTGGTTAACTACAATTTTTATTGTACTTACTTCTCTTCTTCCATATTTTACACACTCTGCCTTTCAGAGAGCATTCAAACCCATGGATCATCATATTATTCAAGAAATTAAGTTTTTAAGGAAAGATGTCAATGATGTTAAGATGTGGTTCAGAGAGCGGGCAAAAGCCAAGCAAAAAACTAAAATAGGATTTTCAGCAAGAGTAGATGCAAAGATTCGAAATTTGAAGGAAAGGTTGCATAAAAAGCGTTCAGCTTTGTCCAGTCCTGATCTTGAGTAA___GTTCACAATTTGCATGAAGTCAGCCCCAGAGTAGATGCAAACATCTGACATTTGAAGGAAACATTGCATGAAAACAGTTGGCCTTGTCCAGCCTTGTTACGGAAAGCCTACATTTTGCATGAAGCTACAAATTTGGACATGTTTTTGTAGAGTTGCAGATCTATACCATGAATGTTCTTTTACCGGCTTTTTTTGCCATTATTCTATTCATTTAGCCAAGGGCTCAAGATTTGTATTATTTCACAATTCAACTTTTGTACCATTACCGATGCGGCAGCAAGTTTTTGGAAGGTCTGCTGTGTATTTCAAAATATTTTAATTTTGAAGTACAAAAGGCAATTTGTCAAGACCAAGGTTCTATCTGCAAACTGATTCTGTAAATTGTAAAAGAGCTCATTGAATAACTTTCTAAGTATTTTCAGAAATGATGAGAATTTCTACTGTATGCT

Fln Alignment:

Contig11249___SGFYHLVTALMLYGYLIPISLYVSIEVVKILQASFINQDIHMYDEETGTPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFIKCSIAGTSYGVVASEVEIAAAKRIAKDLNDQTLNPLDIQNFDIKSQGLNASENSFNSPRFQEPDIELRIEGPESTEMTERPAIKGFNFKDDRLMNGNWLKEPHADMLLLFFRILAICHTAIPEQDEEIGTIKYEAESPDEGAFVVAAREFGFEFCKRTQTSVLIKEWDPSSGQNIEREYKLLNLLEFNSTRKRMSVIVRDEDGQIFLLCKGADSVIFDRLGKNGRNYEESTRMHLAQYGDAGLRTLALSYRTITETEYSEWNATFLKAKTTIGADREALLEVASDLIEKDLILVGATAIEDKLQKGVPRCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICLTLKGIEFGNQDTSTKAAKESIILQMTNAYQTISLEMNPDAAFALIIEGKALAYALEADLKDQFLQLAILCASVICCRVSPKQKALVTRLVKEGTHKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNISFGLTLFYFEAYTSFSGQPIYDDWYMLLFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNIFFNWYRVLGWLANGVYVSLITFFFNIGIFRDQAFRVGGQTPDMAIVGTTMFTCIIWTVNCQIALAISHFTWIQHLFIWGSIGLWYIVLLVYGMMSPIISTDAFQILTGVVGPAAMYWLTTIFIVLTSLLPYFTHSAFQRAFKPMDHHIIQEIKFLRKDVNDVKMWFRERAKAKQKTKIGFSARVDAKIRNLKERLHKKRSALS
Q9LNQ4_______________AGFVHLITALLLYGYLIPISLYVSIEVVKVLQASFINKDLHMYDSESGVPAHARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVEVAAAQQMAVDLDEH---------------GEVSSRTS--TPRAQARDIEVE------SSITPRIPIKGFGFEDIRLMDGNWLREPHTDDILLFFRILAICHTAIPELNEETGKYTYEAESPDEASFLTAASEFGFVFFKRTQSSVYVHERLSHSGQTIEREYKVLNLLDFTSKRKRMSVVVRDEEGQILLLCKGADSIIFERLAKNGKVYLGPTTKHLNEYGEAGLRTLALSYRKLDEEEYSAWNAEFHKAKTSIGSDRDELLERISDMIEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGYSCSLLRQGMKQICITVVNSEGASQDA--KAVKDNILNQITKAVQMVKLEKDPHAAFALIIDGKTLTYALEDEMKYQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGKITLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYNDYYLLLFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGKKNLFFDWYRILGWMGNGVYSSLVIFFLNIGIIYEQAFRVSGQTADMDAVGTTMFTCIIWAVNVQIALTVSHFTWIQHVLIWGSIGLWYLFVALYGMMPPSLSGNIYRILVEILAPAPIYWIATFLVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDRRMWTRERTKAREKTKIGFTARVDAKIRHLRSKLNKKQSNMS

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
133	80			20	0.995493
137	80		20		0.995493
140	80			20	0.995493
141	80	20			0.995493
142		20	80		0.995493
145	80		20		0.995493
147			80	20	0.995493
148			80	20	0.995493
227		33	66		0.997452
228	33		66		0.997452
229			66	33	0.997452
230	66			33	0.997452
1258		88	11		0.923564
1259	88			11	0.923564
1293			90	10	0.90298
2005	11		88		0.923564
2006			88	11	0.923564
2009		88		11	0.923564
2086		71		28	1.0
2214	33	66			0.997452
3005	14	85			0.993533
3006		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain