SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11221

Length: 1762 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11221

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana] sp\|O82660.1\|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor emb\|CAA75723.1\| HCF136 protein [Arabidopsis thaliana] dbj\|BAB0982	-	-	77%
FL-Next	sp=Photosystem II stability/assembly factor HCF136, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Sma3	Chromosome chr1 scaffold_5, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00030205001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II HCF136, stability/assembly factor	IPR016705	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23120.1	HCF136 photosystem II stability/assembly factor, chloroplast (HCF136) chr5:7778154-7780463 FORWARD LENGTH=403	82%
RefSeq	Arabidopsis thaliana	NP_197703.1	photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002310654.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O82660

Fln msg:

Fln protein: MPSFMGLRPFSTQFRRREATVNCMTSSSSSSSNKNSKMWGGCTGARASMDGEDFEEDMGRRQWLVATSAASFAAFNLGQEIARAEDVGLSEWERVPLPIDPGVVLLDIAFVPGEPTHGFLLGTRQTLLETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPSGDYVAVSSRGNFYLTWEPGQPYWQPHNRTSARRIQNMGWRADGGLWLLVRGGGLYLSRGSGITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG*

Protein Length: 412

Fln nts: ATGGGGATCAAATTGAGGTATAAAATGAAACGGCGGATAAGGAGGCATGGGAAGGAGGCCTAGTGTTGGGTGGCCTCTGCACGTAGAGGAAGAATGGCCAAAATAATGCACGCAGCTGCAGCAACAGCCACTCTTCCAAAATGCCACCAGTAATAATAAGAACTATTATGCGGTTCAG_-_ATGCCATCATTCATGGGTTTGAGGCCTTTCTCTACCCAATTCAGAAGAAGGGAAGCCACTGTGAATTGCATGACTAGTAGTAGTTCTTCGTCATCAAATAAAAACAGTAAAATGTGGGGTGGATGCACTGGGGCCCGAGCGTCCATGGATGGAGAAGACTTTGAAGAAGACATGGGGAGGAGGCAATGGTTGGTAGCAACATCAGCAGCTTCATTCGCTGCATTCAATCTCGGCCAAGAAATTGCCAGGGCAGAAGACGTTGGTCTCTCTGAGTGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGATATTGCTTTTGTTCCAGGCGAGCCTACCCATGGTTTTCTCCTTGGTACAAGGCAAACTCTTTTGGAAACAAAGGATGGGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAGGACTTCAATTACAGATTCAATTCCATAAGTTTTAAGGGAAAGGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTCTAAGTTCTCAACTTCCTGGGGATCTGGTTTATATCCAAGCAACTGGTGAAAAGAGTGCAGAGATGGTCACAGATGAAGGCGCTATTTATGTGACTTCAAATAAAGGATACAATTGGAAGGCTGCTGTGCAAGAAACTGTTTCTGCTACCTTAAACCGCACAGTTTCTAGTGGTATTAGTGGTGCAAGTTACTACACGGGGACTTTTAATACAGTTAACCGTTCTCCCAGTGGTGATTATGTGGCTGTTTCAAGCCGTGGGAATTTCTATCTAACATGGGAGCCTGGCCAGCCATATTGGCAGCCTCACAACAGAACAAGTGCTCGCAGGATTCAGAACATGGGTTGGCGTGCAGATGGTGGACTGTGGCTTCTTGTACGTGGCGGTGGTCTCTACCTTAGCAGAGGCTCAGGGATCACTGAGGAGTTTGATGAAGTACCAATTTCAAGTAGGGGTTTTGGCATTCTTGATGTTGGGTATCGTTCAAAGGATGAAGCTTGGGCAGCTGGAGGCAGTGGCATTTTGCTGAGGACAGTAAATGGTGGAAAAACATGGATCCGTGACAAGGCTGCAGATAATATTGCAGCTAATCTTTATGCTGTGAAGTTTATTGATGAAAAGAAGGGCTTCGTGTTGGGAAATGATGGGATTCTTCTTCGGTATTTGGGATGA___TTAACTATATATTCATCTTAGATTATAATTCTTTGGAGGAAGAAGATTTTTTAGCTTTGTCGGCATGTATAAGTCACTGTAATCAATGGCATGCAATGGAGGACTCAGTTTTGTAGTACCGATGACTTTCTTTTTATGAAAAATATATTGCATGGAAGCATTCCTAAATGAAATTATTTAGATTTTCTCAATAATTTTAGCCATAAAAATTGGCCATTCTTTGGTAAGCAATCATGAGGTCATGCTTCAGGAAAAGAATATTTCACAAGTACATATCAGTAGATACGTTCCAATGTTCCATACGTAATGATGTAGTTTCATAAACAGTGAATTGTGTAACATAGACATATC

Fln Alignment:

Contig11221___RRQWLVATSAASFAAFNLGQEIARAEDVGLSEWERVPLPIDPGVVLLDIAFVPGEPTHGFLLGTRQTLLETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPSGDYVAVSSRGNFYLTWEPGQPYWQPHNRTSARRIQNMGWRADXXXXXXXXXXXXXXXXXXXITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG
O82660_______________RRELLYQSAAVSLSLSSIVGP-ARADEQ-LSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1594			10	90	0.90298
1596			30	60	1.0
1641	83			16	0.994512
1680		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain