SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11211

Length: 1889 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11211

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana] sp\|Q9SMP0.1\|NFYC1_ARATH RecName: Full=Nuclear transcription factor Y subunit C-1; Short=AtNF-YC-1; AltName: Full=Transcriptional activator HAP5A emb\|CAB62348.1\| transcription factor Hap5a [	-	-	9.0e-38	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Ccaat-binding transcription factor, putative	-	-	4.822e-26	-

Source	Gene names
Sma3	AT1G08970; AT5G63470; At1g08970; At1g54830; At1g56170; At3g48590; At5g27910; At5g38140; At5g50480; At5g63470; B1142B04.32; C-HAP5A; C-HAP5B; CHLREDRAFT_117655; CIP2a; CIP2b; F14C21.41; F14G9.21; F7G19.16; GSVIVT00000385001; GSVIVT00002065001; GSVIVT000062

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0043193	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48590.1	HAP5A, ATHAP5A, NF-YC1 nuclear factor Y, subunit C1 chr3:18008893-18009938 REVERSE LENGTH=234	2.8026e-45	69%
RefSeq	Arabidopsis thaliana	NP_190428.1	nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana]	4.2039e-45	69%
RefSeq	Populus trichocarpa	XP_002318733.1	predicted protein, partial [Populus trichocarpa]	5.60519e-45	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT0

Fln msg:

Fln protein: MEGKYPHLQSSATPPVSHGPASLMHNSLFQQQQPQMPLQHHQQQIQKQQLQMFWQQQMQEMEQVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWTGIPHAEPMSYGGIHYPLMHAQPYNHNFNPDVMAAQQTMSQQLMSQQPLMPDQPLMYQPPQQ*

Protein Length: 225

Fln nts: CGTCGTGACCTTGGCTGTGAGTCAGGTTCTATCTGTGCATTTACGTGAGTCAAGAGCTAGAGCTTCTCCCAGTGCTCCAAGATCATTGAAGATTCCATGAAGCCACCAAATTTTCGGTCTTTACTTTCTCGTGCTAAACAAATTTTCTCCTCCCTCAATTCAGTCATTTAACATTGGATCCGATATCGGAGAAATATCTGTAATATTCTCTAGTTTTAAACCAAGATCCCATGATTCATGCTGTAATATAACGCAGTTTAAACACCCACAAAAAATCCGTATGTGGGATACAAAGCACTGTTATTTGCTAAACCCATCTGAAGTGCAGAATTTAACTCCCACAAAAATCCGTATGAGGGATACAAAGCCCTGTTATTTGCTATACGCTTTCTGTATGTATGAAGCTCTGTAGGCACCTACGTATGCACATATTCCATTGTCATCGGGTATAAAATACTGTGTTGCTGCCCAAAATCGGTCTCATTCATCTCGAGGAAGAGGTACTAAGGTTAACTGCCTCTGTAAGGAGCTTTTAGGGTTGTGATCTCTATCGTTTCACTTCA_-_ATGGAAGGCAAGTACCCACATCTTCAAAGCTCAGCAACACCACCTGTTTCTCATGGACCAGCAAGCTTGATGCATAATTCGCTCTTCCAGCAACAGCAGCCACAGATGCCTCTGCAACATCATCAGCAGCAGATCCAGAAACAGCAGCTGCAGATGTTTTGGCAACAGCAGATGCAAGAGATGGAACAAGTTGCAGAGTTTAAGCAGCATCAACTTCCTCTTGCCAGAATTAAGAAAATAATGAAATCTGATGAAGATGTGAAGATGATAAGTGCTGAAGCCCCTGTCCTATTCTCAAAGGCATGCGAGCTTTTCATTTTGGAGCTTACATTACGTTCATGGTTACATACTGAAGAGAACAAAAGACGTACTTTGCAGAGAAACGATATTGCAGGAGCTATAAGTAGGGGTGATGTTCTTGATTTTCTTCTTGATATTGTTCCTAGAGATGAAGTCAAGGATGAGGAATATGGAGGACACTGGACTGGGATTCCTCATGCAGAACCTATGTCTTACGGAGGAATACACTATCCACTCATGCATGCTCAGCCTTACAATCACAATTTTAACCCTGATGTGATGGCTGCTCAACAAACAATGTCTCAGCAATTAATGTCACAGCAGCCTTTAATGCCAGACCAGCCGTTGATGTACCAACCTCCGCAGCAATGA___TCGTGAGGTTGAGTGGAGGCCAGAAACTATTAATTTAGAATGATCGGGCTTATTGCTCAAGAGCCTAGATAGCATCTTCAGAACAGCTAGATCTTCTCAGATACAGTATTTGCTGATGAGATACAGCCGGGGTGATATATTTATATTGGTTGGTCCCTTATATATTATCAGATACTAAGGCTGATCAGTACTCTGGTCTTGTTATGCCTAGCTATATTTTGACAAAATAAGTGTTTATTAAAAATCTTTTCATGGCCACCAGATGGATTAATCATTTATGCTTTTTTTGAAAGGATGAAAACGAGGGTTTGGCTATAAGGCACAGAAAATACAATCAAGAATGGAATATAAACAAGTTTCTGCTTTAGAGGATTTGAACATGAATAAGATTGAGTTAAATTTAGTTATCTTCTAAAGTTGATTCTAGAATATTTCTTCTTACACAGTTAGGGCTACCTTGCAGCAGTTTGGTTGGTTACTTCACAATAAAGGTGTGCTTGGGCCCTGCATCCATTGATCAAATTCATTGAGGTTTTGTTGACATCAATGTAAAGAGCAATTAATTGAACTATCGGAAAGTGGTTGGTAATATACTGAATGATTTATGGAGCATATTTAATTTAGGGTTGTTTCGCATTAGCTACCATTCATGTC

Fln Alignment:

Contig11211___MEGKYPHLQSSATPPVSHGPASLMHNSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------VAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWTGIPHAEPMSYGGIHYPLMHAQPYNHNFNPDVMAA
A9NUT0_______________MEGKYPHLQSSPSPSVSHGPSSLMHNSIFQQQQPQMPMQHHQQQLQGSMQPHLHYMQIQKQQLQMFWQQQMQEMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWPGIPHAESMSYGGIHFPLMHAQPYHHNLNPDVMTA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
276	85		14		0.993533
330	83		16		0.994512
408	12	87			0.992554
411			12	87	0.992554
412	87		12		0.992554
495			85	14	0.993533
498	85		14		0.993533
500	85		14		0.993533
695	80		20		0.995493
1495	20	80			0.995493
1496	20	80			0.995493
1498	20		80		0.995493
1500	20			80	0.995493
1627	25			75	0.996473
1635	75			25	0.996473
1792		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain