SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11207

Length: 2060 nt

UniGene Fasta

>sp_v3.0_unigene11207
ATGGGGATCTTGAAGTCGTTTTTGCTTTTGGTTGCTGTCAGTATCCGATGACAAGCTTTTGATGCTCCTATCGAAACCCTAGGCCAAACAACCGTGCATTTTGAAACTTCGACACCGGAAAGCAGAAAATTGCAATCGAAGTCGAGTGGATGCGAACTCAGGACCGCACGGTCAAAAGTCCCTCTTTAAATTTCCTCCGCTGTAGAACTTCACAGCTCTGTAAACTCGCATTTCGGAGCTTTTTAACTTCAACAGCAATGGCGTCCACAGTAGTGTAGAATGCGAGCAATTTAACTCTCCTGCCATTTACTCGCAGCCATATTCTACAATATTCAAAAAAAGCTTGTGGAACGTTCCAGATCTTCAAAATGCAATGCTTTCACTGTCCGAGTATCCTTTCCGTGGGAGGAGAAAGTCTTTACTCTTATCATATTCGATCCTTTCCGAGTTCTTTCCAATTCGGCTGGAGTTTAGCTCCATTTTCTGGCGGCATGGCGGCAAATACTTGGAGCTCAAAGTTTGGAGGAGCGAAATTGTTCCATAGCGGGGTTGCTGGAAATGGAGGTGGTTTGAAGGTACGCAGAGTGTGCAGAAGCTCGTATTCACCGTTCAGACAGATGGAGTCAGCTCGCATAAAGGTTGTGGGCATCGGCGGTGGAGGGAACAATGCTGTTAATCGAATGATTGCCTCTGGTCTTCATGGCGTTGAATTTTATGCCATAAATACAGATGCTCAAGCTCTGCTACAATCAGCTGCAGATAATCCTGTTCAAATTGGAGAACAATTGACGCGTGGACTGGGTACTGGTGGAAATCCTGAACTCGGGGAACAAGCTGCAGAAGAGTCAAAGGAAGCTATAGTTGCATCTCTTAAGGAATCAGACCTTGTATTTATTACAGCTGGAATGGGCGGGGGAACAGGGTCTGGTGCAGCTCCTGTTGTTGCACGATTATCAAAAGAAGCAGGCAATCTGACTGTAGGTGTAGTTACTTATCCTTTCAGTTTTGAAGGTCGTAGGAGATCTGTACAGGCCTTGGAGGCAATTGAGAGACTACAGAAATGCGTGGATACTCTTATTGTCATTCCAAATGATAGGTTACTAGATGTTGTTGAAGAGCAGACACCTCTTGAAGAGGCTTTCCTCCTTGCTGATGATGTTCTACGTCAAGGTGTACAAGGAATTTCTGATATAATAACAATTCCAGGCTTAGTGAACGTGGACTTTGCAGATGTGAAGGCTGTTATGAGTAATTCAGGAACTGCAATGCTTGGAGTGGGTGTGTCATCTGGAAAAAACCGAGCAGAGGAAGCTGCACAGCAGGCTACTTCAGCTCCCCTCATCGAAAGATCAATAGAGCGTGCTACTGGTGTTGTGTACAATATTACTGGGGGAAAAGACCTTACACTGCAAGAAGTAAACAAAGTATCCCAGGTTGTTACTAGCTTAGCAGATCCATCAGCAAATATCATATTTGGAGCTGTCGTTGATGATAGGTATGCAGGAGAAATACACGTAACTATCATTGCTACAGGATTTTCTCAAACTTTTCAAAAAACATTAGTAACAGACCCAAAGGTTGCCAGGCAAGAAGCTCAGGAGGCTAAAGGATTGGAGTCTAGTAGAAAAGGTTCAGCTCCTGTTTCTTCTAGGCCTTCTGGTAGGAAGTGGCTTTTATGAAGGGGTGAAATATTTCAGTTGGACTGCAAGTTGCTAGATATATCAAATCCAGAATGCGAGTAACTTCATGATTGTCATGAATACTGCATATTACTGCTCTCTTTATCATTTGTACAAGAGGCAGTGGTGGCTTAAGCAGGAACGTAAAAACTCATTATAGAGACCACGCTTCTTTCATTTAGGAGGCATTGTGAGTGGTTTTAATCATTGGCAGTTTGTTTGATCCTCTGTGATCAATTAATGTGTACTTGTTTTCTTTGGAATGCTTCAATTCAAGTTTTTCATCCCTAAGCATATCTTTGTATGATTTATGCTTCAAGATAACAAAACTAGAAAAACAGAAATATTTTGTGCCCCCTTGAGAATTTTTTGGATCAAGTG

Ace file of the UniGene sp_v3.0_unigene11207

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FtsZ1 n=1 Tax=Marchantia polymorpha RepID=Q84K12_MARPO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55280.1	FTSZ1-1, ATFTSZ1-1, CPFTSZ homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 chr5:22420740-22422527 REVERSE LENGTH=433	77%
RefSeq	Arabidopsis thaliana	NP_200339.1	cell division protein ftsZ-like protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002300342.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSV8

Fln msg:

Fln protein: MQCFHCPSILSVGGESLYSYHIRSFPSSFQFGWSLAPFSGGMAANTWSSKFGGAKLFHSGVAGNGGGLKVRRVCRSSYSPFRQMESARIKVVGIGGGGNNAVNRMIASGLHGVEFYAINTDAQALLQSAADNPVQIGEQLTRGLGTGGNPELGEQAAEESKEAIVASLKESDLVFITAGMGGGTGSGAAPVVARLSKEAGNLTVGVVTYPFSFEGRRRSVQALEAIERLQKCVDTLIVIPNDRLLDVVEEQTPLEEAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMSNSGTAMLGVGVSSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTFQKTLVTDPKVARQEAQEAKGLESSRKGSAPVSSRPSGRKWLL*

Protein Length: 438

Fln nts: ATGGGGATCTTGAAGTCGTTTTTGCTTTTGGTTGCTGTCAGTATCCGATGACAAGCTTTTGATGCTCCTATCGAAACCCTAGGCCAAACAACCGTGCATTTTGAAACTTCGACACCGGAAAGCAGAAAATTGCAATCGAAGTCGAGTGGATGCGAACTCAGGACCGCACGGTCAAAAGTCCCTCTTTAAATTTCCTCCGCTGTAGAACTTCACAGCTCTGTAAACTCGCATTTCGGAGCTTTTTAACTTCAACAGCAATGGCGTCCACAGTAGTGTAGAATGCGAGCAATTTAACTCTCCTGCCATTTACTCGCAGCCATATTCTACAATATTCAAAAAAAGCTTGTGGAACGTTCCAGATCTTCAAA_-_ATGCAATGCTTTCACTGTCCGAGTATCCTTTCCGTGGGAGGAGAAAGTCTTTACTCTTATCATATTCGATCCTTTCCGAGTTCTTTCCAATTCGGCTGGAGTTTAGCTCCATTTTCTGGCGGCATGGCGGCAAATACTTGGAGCTCAAAGTTTGGAGGAGCGAAATTGTTCCATAGCGGGGTTGCTGGAAATGGAGGTGGTTTGAAGGTACGCAGAGTGTGCAGAAGCTCGTATTCACCGTTCAGACAGATGGAGTCAGCTCGCATAAAGGTTGTGGGCATCGGCGGTGGAGGGAACAATGCTGTTAATCGAATGATTGCCTCTGGTCTTCATGGCGTTGAATTTTATGCCATAAATACAGATGCTCAAGCTCTGCTACAATCAGCTGCAGATAATCCTGTTCAAATTGGAGAACAATTGACGCGTGGACTGGGTACTGGTGGAAATCCTGAACTCGGGGAACAAGCTGCAGAAGAGTCAAAGGAAGCTATAGTTGCATCTCTTAAGGAATCAGACCTTGTATTTATTACAGCTGGAATGGGCGGGGGAACAGGGTCTGGTGCAGCTCCTGTTGTTGCACGATTATCAAAAGAAGCAGGCAATCTGACTGTAGGTGTAGTTACTTATCCTTTCAGTTTTGAAGGTCGTAGGAGATCTGTACAGGCCTTGGAGGCAATTGAGAGACTACAGAAATGCGTGGATACTCTTATTGTCATTCCAAATGATAGGTTACTAGATGTTGTTGAAGAGCAGACACCTCTTGAAGAGGCTTTCCTCCTTGCTGATGATGTTCTACGTCAAGGTGTACAAGGAATTTCTGATATAATAACAATTCCAGGCTTAGTGAACGTGGACTTTGCAGATGTGAAGGCTGTTATGAGTAATTCAGGAACTGCAATGCTTGGAGTGGGTGTGTCATCTGGAAAAAACCGAGCAGAGGAAGCTGCACAGCAGGCTACTTCAGCTCCCCTCATCGAAAGATCAATAGAGCGTGCTACTGGTGTTGTGTACAATATTACTGGGGGAAAAGACCTTACACTGCAAGAAGTAAACAAAGTATCCCAGGTTGTTACTAGCTTAGCAGATCCATCAGCAAATATCATATTTGGAGCTGTCGTTGATGATAGGTATGCAGGAGAAATACACGTAACTATCATTGCTACAGGATTTTCTCAAACTTTTCAAAAAACATTAGTAACAGACCCAAAGGTTGCCAGGCAAGAAGCTCAGGAGGCTAAAGGATTGGAGTCTAGTAGAAAAGGTTCAGCTCCTGTTTCTTCTAGGCCTTCTGGTAGGAAGTGGCTTTTATGA___AGGGGTGAAATATTTCAGTTGGACTGCAAGTTGCTAGATATATCAAATCCAGAATGCGAGTAACTTCATGATTGTCATGAATACTGCATATTACTGCTCTCTTTATCATTTGTACAAGAGGCAGTGGTGGCTTAAGCAGGAACGTAAAAACTCATTATAGAGACCACGCTTCTTTCATTTAGGAGGCATTGTGAGTGGTTTTAATCATTGGCAGTTTGTTTGATCCTCTGTGATCAATTAATGTGTACTTGTTTTCTTTGGAATGCTTCAATTCAAGTTTTTCATCCCTAAGCATATCTTTGTATGATTTATGCTTCAAGATAACAAAACTAGAAAAACAGAAATATTTTGTGCCCCCTTGAGAATTTTTTGGATCAAGTG

Fln Alignment:

Contig11207___MQCFHCPSILSVGGESLYSYHIRSFPSSFQFGWSLAPFSGGMAANT---WSSKFGGAKLFHSGVAGNGGGLKVRRVCRSSYSPFRQMESARIKXXXXXXXXXXXXXRMIASGLHGVEFYAINTDAQALLQSAADNPVQIGEQLTRGLGTGGNPELGEQAAEESKEAIVASLKESDLVFIXXXXXXXXXXXXXPVVARLSKEAGNLTVGVVTYPFSFEGRRRSVQALEAIERLQKCVDTLIVIPNDRLLDVVEEQTPLEEAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMSNSGTAMLGVGVSSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTFQKTLVTDPKVARQEAQEAKGLESSRKGSAPVSSRPSGRKWLL
C0PSV8_______________MQCFHSPCILSVGGETVYYCNVRSSPSSVQFGRSLAPFSGGMAANTAVSWSSQFRVGKLFHSEVARNGGGSKVRRVCRSSYSPFRQMESARIKVVGIGGGGNNAVNRMIAAGLHGVEFYAINTDAQALLQSATENPVQIGEQLTRGLGTGGNPELGEQAAEESKEAIVESLKESDLVFITAGMGGGTGSGAAPVVARLSKEAGNLTVGVVTYPFSFEGRRRSVQALEAIERLQKCVDTLIVIPNDRLLDVVEEQTPLEEAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMSNSGTAMLGVGVSSGKNRAEEAAQQATSAPLIERSIERATGVVYNITGGKDLTLQEVNKVSQVVTSLADPSANIIFGAVVDDRYAGEIHVTIIATGFSQTFQKALVTDPKVAKQEAQEAKGLESSRKGSAPVSSRPSGRKWLL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
178	20		80		0.995493
181		80	20		0.995493
182		80		20	0.995493
223	80			20	0.995493
266	14	85			0.993533
314	14		85		0.993533
675	18			81	0.999994
733	12		87		0.992554
736		87		12	0.992554
902		85		14	0.993533
911			66	16	0.988813
912		66		16	0.988813
1496	10		90		0.90298
1739	96		3		0.991825
1782			5	94	0.999997
1936	4	95			0.995055
1973	25		75		1.0
1974	25	75			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain