SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11204

Length: 1680 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11204

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os07g0673500 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0D3Q1_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49430.1	SRp34a, SR34a, At-SR34a SER/ARG-rich protein 34A chr3:18332668-18334829 FORWARD LENGTH=300	67%
RefSeq	Arabidopsis thaliana	NP_001078264.1	putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002302710.1	predicted protein, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNB5

Fln msg:

Fln protein: MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDIDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVELAHGGRRTSSSLGRPSSYSSSVGGRGGRGGVSRHTDYRVVVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSRSYIQVKEYGPRRSISRSYSRSHSRSRSVTRRHSRSISIGRNNRSRSRSLTRSPRRPPLSKVHGRSASKSHSSSRSL*

Protein Length: 261

Fln nts: ATGGGGGTGATGTATTTGGTTTCATTTGCCACAAAATCTTTGGTCGACCGAGTTTCTCTTTTGAAATTCTTCCGTTCCCTGACTTCGAAAATTTCAGGCTTTGCTGCCTGTTGCTGTCACGGGACTTCGAGCACGGGGCAGCGCGACCAGTTGGGGATTTTTATCGTTTTCAGTTGCCCGCTTTCATTTCTATTGCCCGCAAGGTCCTGTGTCTTTGTCGCGGTGGATTTCTGGAGAAGTTAAGATGCAAGGCGCTTTGGACAAATCAAGGAGCTTTGCACTCTTAAGGTAGAGAGAGTAAGTGGGAGGGAAAGTTCAAAGAAGCAATGTGGAAAATGCAAAGTCTTGGGAAAGGAGAGGAAGCTCAAATACTTGGGAAAGGAGGAGGACCAGTAAGCCAATATGGTTATTATAAGCACTGTGAAATTTGCGGGCATTAAAACTATTTACACCTGCGTTTAAAATGGAGTCTACGCTGCATTTAAAATGGAGTCTTTTGGAGCAAAGCGAGGAGGGATATAGGATTTGGACATTGCTTGGACAAGAGATAGTCGTTTTGGTTTGCCTCATAGCGTCGATGCTTTGGCCGAGTTCTTTACCTAGTTAGGAGAGTGTGTGCTCTAGGGCGCTATATTTTGAGAGGATTACCCTGCAGAAGCTATATTGGTAGAGCTTTATAAGCCCACTGACA_-_ATGAGTAGCCGCATGACCCGAACTCTCTATGTTGGCAATTTGCCTGGCGATGTCCGAGAAGGGGAAATAGAAGATCTCTTTTATAAGTATGGGCGAATTATTGACATTGATCTGAAGGTTCCTCCACGACCTCCTGGCTATTGTTTCATTGAGTTTGAAGATGCACGTGATGCTGAAGATGCTATTCGTGGCCGTGATGGATATAACTTTGATGGTCATCGAATACGGGTAGAGCTTGCCCATGGGGGTCGAAGGACGTCTTCTTCTCTAGGTCGACCCAGTAGCTACAGTAGCAGTGTTGGTGGGCGTGGTGGCCGTGGCGGAGTCTCTAGACACACTGACTATCGCGTTGTTGTGACAGGATTACCTTCATCAGCATCGTGGCAGGACCTGAAGGATCACATGCGACGGGCTGGTGATGTCTGCTATGCTGAAGTGTTTCGTGATAGCAATGGTACACGTGGAACTGTGGACTACACCAACCTCGAGGACATGAAATATGCTATCAGGAAACTGGATGATACTGAATTCCGGAATGCCTTCTCTCGATCTTATATACAGGTGAAGGAATATGGACCTCGGAGGAGCATCTCTAGAAGTTATAGCCGAAGTCACAGCCGCAGCCGCAGCGTTACTCGAAGACATAGTCGTAGCATTAGTATTGGTAGGAATAACAGATCTCGGTCAAGGTCTTTAACAAGGAGCCCAAGACGCCCACCTCTATCCAAGGTTCATGGTCGAAGTGCTAGCAAGAGTCACAGCTCATCTCGTTCTCTTTAA___CTAGCGGTGAGTTCCTGAGGTGTTATTGCAGTTGCAAAATTGGACAATTGCACTCTTGATTTACTTCTGCAAGATACTGTGGACAAGTCTATTTGGCCTCATCACTTGATTGTTCTTTATTATTCCAAATCACTGAAGCAGAAAATTTATTCAGTCAATGTTCTTCTCCTTTCATGGATATCTCTGCAAGGGGAAGTCTCTTTTGGTGA

Fln Alignment:

Contig11204___MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDIDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTDYRVVVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSRSYIQVKEYGP
B8LNB5_______________MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDVDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVEFAHGGRRTSSSLGRPSSYSSIAGGRGGRGGVTRHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDSEFRNAFSRSYIQVKEYGP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1464		88	11		0.923564
1470	87		12		0.992554
1471	87			12	0.992554
1472		87	12		0.992554
1543	85		14		0.993533
1610	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain