SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11199

Length: 3334 nt

UniGene Fasta

>sp_v3.0_unigene11199
CGTCGTGACCTTGGCTGTCACTCAATTCTTGCAGAAACTCAAATCATCGCCATAAACTCCCCAAGAACCATTAATTTTTTTGACCTTTGCGAGGATGTCCTTGAATATCCGTGAACTCCCCCATGCATGCATTTGTCAATGTTTGGATTCACGTTGATCATGTTTCGGCTTCGGATAGAAATTCCACGGAACCCATGATTGTAAGTTCGCTAAGTTTCAGTTCACAGATGCTTTCGAAAGGGATTGAAATCAGCCCATTTATTGAAAAGCTCGGGACATTTACAGCTTATGGGATGCAAAGGGATCTATATTGAGAAAAGTCATTGTGAATGGTCTTTTGAGTACGTTTTTGGATTGATAGAAGCAGCTGGTACCGGGAATAAATTTGGGATTTTTCAAAATTTTTATCAGGCCGTGGTTGGAGGGAGACCCAGCGGGCGAAATTTGATCTTATCAGGCCATCAGTGCAGCATTCTAATGCCACATTTCATATTGGACAAGGACCATGGGCGCTTCTGTTGAGGCAAGTCTTGTTAGCGGCTAATGATGCAAAGCTACATGGAGGATTGTGTATGAAACTTGGTAGACTTGCCTATAAGATTGTTAAAATATTTCCATCTTTAGAGGCAGTGCAGCCAAGATGCATGCCAGGCATACAGTCCTTGTGTGCTCTGCACCTTGCACTTGATAAGGCAACAGCCCTTCTTCAGTACTGTGCCGAATGTAGCAAACTATACTTGGCTGTTACCGGGGACTCAATCCTGGCAAAATTTACAAGGATAAAAGGTTCACTTGCTCAAAATCTAAGCCATCTTCAATCCATGGTGCCACGAAACCTAGCCAAGCAGATAGCTGAAATTGTTGAAGAGCTTGAAGAGATGACATTTGCATTAGAACCATCAGAGATGGAAATTGGTATTGATATTATTGCACTGCTGCAACATAGTTCTGGCAGTTGGGATGATACATCACAACTAGAGGTTTTCCATCAGGTAGCTAATAGGTTAGGCATAATATCTCCAAAAGCTGTGTTAACAGAGAGAAGAGCTCTAAAGAAGCTGCTTGATAAAGCCCAGGCTGAGGGAGATCAGAAGAAGGTTTCTATTGTTGGTTACCTCCTAAATATTCTAAGAAAGTATGCCAAGGTCAGCTATATTTCTCTAGATAATGGTTCTCGGAATTCAGATCCATGTTTGGAATCAGGTAGAGAAATTGCAAGTGAAGTAAGTGTGGAAAGGAAAGATGACCAGTATGGATCCAGACATTGGTCATTTAACTTAGCTGCTAAAGAAACCACTAGCAGTTCAGGGGGTGCACCAGTACCTCCTGAGGAATATAGATGTCCAATTTCCTTGCAGCTAATGTCTGATCCTGTAGTCATTTCATCTGGCCAAACATATGAACGAGCGTGTATAGAGAAGTGGTTCAGTGAGAACCACGATACATGCCCAAAATCTCAGCAAAAATTGTCACATCTTTCCATTACTCCTAACTACTGTATCAAAGGTCTGATTGTCAGTTGGTGTGAAAAGCATGGAGTCAAGGTTCCAGATCCAATTACTCGACCTCTTCCTACATCTCCTTTGAGATTAGACCCATCAAACTCTGTTGATATAACATATCAACATGATGACTCTGTGAAAGAGATCAAACTGAGCCCATTGGAAGACAACCGAGATGCATCCATTCTCAAGGAAGATGACGATGATATAACAACTGGCCATTTGGGTGTTAATTATCACTGTGATTCCATATTTCTTCAGGAGAATGAGGAATCAAGTAAAATGTCTGATACTAGTGTCTCCCGGCCTTGTGATATGATCAAGTCTGAGAATACAGATGAAGATGATTGTTCAAAGTATGAAAGGCTTCTCACAAGCCTGACAACGCCACCACTAGAATCACAATCAAGAGCAGTTGAGGAGGTCAAGTGTCTGTCAGAGGATGATGACAAGGCTTGCTGTAACATTGTTGCTAGTGGACTTATCCCTCCTATTGTGAGTTTCTTGCGTTCAGCAATTGATGCCTCTGATATCAAGGCACAAAAGATTGGAGCTCTGGCTCTTTTGAATGTTGCCAAAGTTGACAGGAACAAGATATTGATTGTATCTGCAGGAGCACTGCCCATTTTGTTGGATCTGATTCATTCTGAAATAACAGAAATAGCAGTAGCAGTTTTGCTAACATTATCCAGCTTGGATGACAACAAAGCTAGCTTTGTTTCTTCTGGGGTAATTCCTCTTCTTTTGGAACTCCTCGAATCAAGATATGAGCATTGTAGGCATGATGCCCTAAATATTCTCTACAATCTGTTGACAATCTTTTGGAAGTGGTCCAATATGTTATCTGTGGCATCTGTATCTGAGCTGGTTGGTCTTTTTGGTGTTAGTGAACTTAGAGGTAAATGCATCTCAATTTTGAATAACCTGGCTGGTACTGAAGAGGGCAGAGCAGTAATTGCTGGAACAGAAGGCTGTGTTCTGGCCATGGCAGAACTGCTTGACACAGGCACCTCTGAAGAACAAGAGCAAGCAGCGAACATTCTTTTATTGTTGTGTACAAATAGTTTTGAGCACAGTCAATTGGTATTAAGAGAAGGTGTGATCCCATCTTTAGTTCATATTTCTGTTGATGGAAGCCCAGATGGGAGAGATAAAGCGCTGAAATTACTAGAGCATTTCAGAGAGCAGCGGTTCAAGGATTATTCATGGAAGTCTTCTCCTAAGGTTGCATATAGCACAATGACATCATTTAATGAAGAAAGCTCCTCTATCAAAACAAGGAAATCACTTGTACAAAATTCTAAGAAGAGTGCTGGAAAGAAAAACTTCTTGTCAAAACTCAGCTCGTTGTTCTCTACATGCATTGGAAAATCATGACATTCTAGGATGAAGAAGCTTCCTTCAAAGTTAAGTTTGAACTTCTTTTCAATAGGGTATTTTCCTTGTAGGGTTTTCCAAATTTTCACTTTTTGTCATACATGTATGGAAGCTCCTCTGTTTCATGTAAATAAAGTAGGATTTCAGATCATCTTGTAGCTTACTGGTTTAGGATGAGTGTACAAATGTTTGAGAGGGTAGATGTTGATAAGAAATTAAGATTTATGTGATAAATAAGGCGTGCTTTTTTCCTCAATGAAGCACAAAATGAGAGGAGAGCATAATAGTGACATTAGCAGGAGACTATATATTCACCTACTTTGGTCTGTTTAGTACTCAGATTTTCTTTGTGGTTCAGATTTCGTACATTGTCATGTATCATTCTTTCAATTGTTTCAGGGCAATTGTGCAGGACCATTCCTTCAGTTTATGCACAAAGTTCTGGTTTTGAGTCA

Ace file of the UniGene sp_v3.0_unigene11199

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RMH5_RICCO	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	At1g67530; F12B7.8; GSVIVT00014601001; GSVIVT00035050001; PUB7; RCOM_1080870; VITISV_036163;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A903

Fln msg: your sequence is longer than subject: 769 - 371

Fln protein: MKLGRLAYKIVKIFPSLEAVQPRCMPGIQSLCALHLALDKATALLQYCAECSKLYLAVTGDSILAKFTRIKGSLAQNLSHLQSMVPRNLAKQIAEIVEELEEMTFALEPSEMEIGIDIIALLQHSSGSWDDTSQLEVFHQVANRLGIISPKAVLTERRALKKLLDKAQAEGDQKKVSIVGYLLNILRKYAKVSYISLDNGSRNSDPCLESGREIASEVSVERKDDQYGSRHWSFNLAAKETTSSSGGAPVPPEEYRCPISLQLMSDPVVISSGQTYERACIEKWFSENHDTCPKSQQKLSHLSITPNYCIKGLIVSWCEKHGVKVPDPITRPLPTSPLRLDPSNSVDITYQHDDSVKEIKLSPLEDNRDASILKEDDDDITTGHLGVNYHCDSIFLQENEESSKMSDTSVSRPCDMIKSENTDEDDCSKYERLLTSLTTPPLESQSRAVEEVKCLSEDDDKACCNIVASGLIPPIVSFLRSAIDASDIKAQKIGALALLNVAKVDRNKILIVSAGALPILLDLIHSEITEIAVAVLLTLSSLDDNKASFVSSGVIPLLLELLESRYEHCRHDALNILYNLLTIFWKWSNMLSVASVSELVGLFGVSELRGKCISILNNLAGTEEGRAVIAGTEGCVLAMAELLDTGTSEEQEQAANILLLLCTNSFEHSQLVLREGVIPSLVHISVDGSPDGRDKALKLLEHFREQRFKDYSWKSSPKVAYSTMTSFNEESSSIKTRKSLVQNSKKSAGKKNFLSKLSSLFSTCIGKS*

Protein Length: 770

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTGCAGAAACTCAAATCATCGCCATAAACTCCCCAAGAACCATTAATTTTTTTGACCTTTGCGAGGATGTCCTTGAATATCCGTGAACTCCCCCATGCATGCATTTGTCAATGTTTGGATTCACGTTGATCATGTTTCGGCTTCGGATAGAAATTCCACGGAACCCATGATTGTAAGTTCGCTAAGTTTCAGTTCACAGATGCTTTCGAAAGGGATTGAAATCAGCCCATTTATTGAAAAGCTCGGGACATTTACAGCTTATGGGATGCAAAGGGATCTATATTGAGAAAAGTCATTGTGAATGGTCTTTTGAGTACGTTTTTGGATTGATAGAAGCAGCTGGTACCGGGAATAAATTTGGGATTTTTCAAAATTTTTATCAGGCCGTGGTTGGAGGGAGACCCAGCGGGCGAAATTTGATCTTATCAGGCCATCAGTGCAGCATTCTAATGCCACATTTCATATTGGACAAGGACCATGGGCGCTTCTGTTGAGGCAAGTCTTGTTAGCGGCTAATGATGCAAAGCTACATGGAGGATTGTGT_-_ATGAAACTTGGTAGACTTGCCTATAAGATTGTTAAAATATTTCCATCTTTAGAGGCAGTGCAGCCAAGATGCATGCCAGGCATACAGTCCTTGTGTGCTCTGCACCTTGCACTTGATAAGGCAACAGCCCTTCTTCAGTACTGTGCCGAATGTAGCAAACTATACTTGGCTGTTACCGGGGACTCAATCCTGGCAAAATTTACAAGGATAAAAGGTTCACTTGCTCAAAATCTAAGCCATCTTCAATCCATGGTGCCACGAAACCTAGCCAAGCAGATAGCTGAAATTGTTGAAGAGCTTGAAGAGATGACATTTGCATTAGAACCATCAGAGATGGAAATTGGTATTGATATTATTGCACTGCTGCAACATAGTTCTGGCAGTTGGGATGATACATCACAACTAGAGGTTTTCCATCAGGTAGCTAATAGGTTAGGCATAATATCTCCAAAAGCTGTGTTAACAGAGAGAAGAGCTCTAAAGAAGCTGCTTGATAAAGCCCAGGCTGAGGGAGATCAGAAGAAGGTTTCTATTGTTGGTTACCTCCTAAATATTCTAAGAAAGTATGCCAAGGTCAGCTATATTTCTCTAGATAATGGTTCTCGGAATTCAGATCCATGTTTGGAATCAGGTAGAGAAATTGCAAGTGAAGTAAGTGTGGAAAGGAAAGATGACCAGTATGGATCCAGACATTGGTCATTTAACTTAGCTGCTAAAGAAACCACTAGCAGTTCAGGGGGTGCACCAGTACCTCCTGAGGAATATAGATGTCCAATTTCCTTGCAGCTAATGTCTGATCCTGTAGTCATTTCATCTGGCCAAACATATGAACGAGCGTGTATAGAGAAGTGGTTCAGTGAGAACCACGATACATGCCCAAAATCTCAGCAAAAATTGTCACATCTTTCCATTACTCCTAACTACTGTATCAAAGGTCTGATTGTCAGTTGGTGTGAAAAGCATGGAGTCAAGGTTCCAGATCCAATTACTCGACCTCTTCCTACATCTCCTTTGAGATTAGACCCATCAAACTCTGTTGATATAACATATCAACATGATGACTCTGTGAAAGAGATCAAACTGAGCCCATTGGAAGACAACCGAGATGCATCCATTCTCAAGGAAGATGACGATGATATAACAACTGGCCATTTGGGTGTTAATTATCACTGTGATTCCATATTTCTTCAGGAGAATGAGGAATCAAGTAAAATGTCTGATACTAGTGTCTCCCGGCCTTGTGATATGATCAAGTCTGAGAATACAGATGAAGATGATTGTTCAAAGTATGAAAGGCTTCTCACAAGCCTGACAACGCCACCACTAGAATCACAATCAAGAGCAGTTGAGGAGGTCAAGTGTCTGTCAGAGGATGATGACAAGGCTTGCTGTAACATTGTTGCTAGTGGACTTATCCCTCCTATTGTGAGTTTCTTGCGTTCAGCAATTGATGCCTCTGATATCAAGGCACAAAAGATTGGAGCTCTGGCTCTTTTGAATGTTGCCAAAGTTGACAGGAACAAGATATTGATTGTATCTGCAGGAGCACTGCCCATTTTGTTGGATCTGATTCATTCTGAAATAACAGAAATAGCAGTAGCAGTTTTGCTAACATTATCCAGCTTGGATGACAACAAAGCTAGCTTTGTTTCTTCTGGGGTAATTCCTCTTCTTTTGGAACTCCTCGAATCAAGATATGAGCATTGTAGGCATGATGCCCTAAATATTCTCTACAATCTGTTGACAATCTTTTGGAAGTGGTCCAATATGTTATCTGTGGCATCTGTATCTGAGCTGGTTGGTCTTTTTGGTGTTAGTGAACTTAGAGGTAAATGCATCTCAATTTTGAATAACCTGGCTGGTACTGAAGAGGGCAGAGCAGTAATTGCTGGAACAGAAGGCTGTGTTCTGGCCATGGCAGAACTGCTTGACACAGGCACCTCTGAAGAACAAGAGCAAGCAGCGAACATTCTTTTATTGTTGTGTACAAATAGTTTTGAGCACAGTCAATTGGTATTAAGAGAAGGTGTGATCCCATCTTTAGTTCATATTTCTGTTGATGGAAGCCCAGATGGGAGAGATAAAGCGCTGAAATTACTAGAGCATTTCAGAGAGCAGCGGTTCAAGGATTATTCATGGAAGTCTTCTCCTAAGGTTGCATATAGCACAATGACATCATTTAATGAAGAAAGCTCCTCTATCAAAACAAGGAAATCACTTGTACAAAATTCTAAGAAGAGTGCTGGAAAGAAAAACTTCTTGTCAAAACTCAGCTCGTTGTTCTCTACATGCATTGGAAAATCATGA___CATTCTAGGATGAAGAAGCTTCCTTCAAAGTTAAGTTTGAACTTCTTTTCAATAGGGTATTTTCCTTGTAGGGTTTTCCAAATTTTCACTTTTTGTCATACATGTATGGAAGCTCCTCTGTTTCATGTAAATAAAGTAGGATTTCAGATCATCTTGTAGCTTACTGGTTTAGGATGAGTGTACAAATGTTTGAGAGGGTAGATGTTGATAAGAAATTAAGATTTATGTGATAAATAAGGCGTGCTTTTTTCCTCAATGAAGCACAAAATGAGAGGAGAGCATAATAGTGACATTAGCAGGAGACTATATATTCACCTACTTTGGTCTGTTTAGTACTCAGATTTTCTTTGTGGTTCAGATTTCGTACATTGTCATGTATCATTCTTTCAATTGTTTCAGGGCAATTGTGCAGGACCATTCCTTCAGTTTATGCACAAAGTTCTGGTTTTGAGTCA

Fln Alignment:

Contig11199___NEESSKMSDTSVSRPCDMIKSENTDEDDCSKYERXXXXXXXXXXESQSRAVEEVKCLSEDDDKACCNIVASGLIPPIVSFLRSAIDASDIKAQKIGALALLNVA-KVDRNKILIVSAGALPILLDLIHSEITEIAVAVLLTLSSLDDNKASFVSSGVIPLLLELLESRYEHCRHDALNILYNLLTIFWKWSNMLSVASVSELVGLFGVSE--LRGKCISILNNLAGTEEGRAVIAGTEGCVLAMAELLDTGTSEEQEQAANILLLLCTNSFEHSQLVLREGVIPSLVHISVDGSPDGRDKALKLLEHFREQRFKDYSWKSSPKVAYSTMTSFNEESSSIKTRKSLVQNSKKSAG
D5A903_______________NEESSELGDTSLSWSCDIVESQNVEEDPCKKYERLLTSLSGPPLELQCRAAEEIRFLSKDDDEARSYMGANGFIHMLVNFLRSAIDACNAQAQETGALALFNIAVNNNRNKAAILAAGAVPLLLELLDSETSEAAVAVLLMLSSLEDNKASIGASGAIPSLIKLMDSESSQCRQDAINALYNLSTFKGNRSYMVSAGAVSRLAHLLVGAEGDCTEKCLTILYHLAAIEEGRATISDTEGCIGAIADILDTGTPNAQEQAAASLLLLCTNSFEHSQMVLREGVIPSLVTLSMNGSPRGRDKAQKLLQHFREQRQRDVSCQSSTAVCTPQTSIYGE---SLKEKKTTHRTTSKKIG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
2808	90	10			0.90298
2810	90			10	0.90298
2811	90	10			0.90298
2813	90			10	0.90298
2815	10			90	0.90298
2816		10	90		0.90298
2819			90	10	0.90298
2821	90		10		0.90298
2822	90	10			0.90298
2823	90			10	0.90298
2825	77			11	0.968132
2826	88	11			0.923564
2828	88	11			0.923564
2829	88			11	0.923564
2918		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain