SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11197

Length: 2144 nt

UniGene Fasta

>sp_v3.0_unigene11197
CGTCGTGACCTTGGCTGTCACTCAGTGGCTGCCTCTGCCTCTGCTGCTGATTCGACATCGATATCGACATGTCTGTGGCTTGTTTCAGAGAAAACTCCCACGTCGTTTTCTTGGCATCGTTGTATGCTCTGCAATCGAAGGCGACCTGTCAGAAAAGATCAAGGAAGAGGAGGTGATATTGTATTAGTTTAACTTGGTTTGCTTCTTCTACCCAACTCCCCCAACTGGGACAGAGCAAAGTTCAGGAGAGGGAATGTCCATACACAGTACTGGAAATTAGGAAGCTTTTATGGCGATTGCACAGCGAAAGTGCCAGTTCTGAGCCAGGAAATCTGCGGGAGTGAGGTAGAGAAAATAGCAAAAGGAATAAGTGTTTCGAAGATGCCGGAGATGCCCAATCAGGTGATAACCTACGAGCAAGTAATCGATGAATTCGAGGCAATGACTACGGATGCTGAGAGTGTTCAGAGGAAAATACTGAAGGAAATCCTGGAACGTAACAGCGGGACTGAATATTTGCAGAAGTGGAATCTCAATGGAAGGATCGACGATCCCCAACACTTCAAATCATGCGTTCCTTTGGTAACTCATGCCGACTTGGAGCCCTACATCCAGAGAATTGCAGATGGGGACCCCTCGCCTATTCTCGGGAACTACAAATGGCAAACGGAAACAGATACCATTCAATGAAGACTTGCTTGCATCAACATTCCAGATCTATTATATTTCAGGCGCTTATAGATCTCGGTTATTTCCAATCAAGCCTGGGGGAAGAGTCCTTGAGTTTTTCTATGGTAGCAACCAATCTTACACCAAGGGGGGCTTACTAGCTTCTACAGCAACCTCAAATATATATCATAGTGAATCTTTTAAATTATATAAGAAGAACATCCAGATCTTGGGATGCAGCCCAGATGAGGTTATATTTGGGTCTGATTGTCGGCAATCCATGTACTGCCATCTTTTATGTGGGCTTCTCTATTCAAATGAGGTACAATATATGTCATCAACTTTTTCATACGGTATTGTAGAAGCTTTTCGGACCTTTGAGCAAGTCTGGCAACAGCTTTGTGGTGATATTAGGGAAGGAAGACTCAATGAGAAAATCACAGTGACCCCTATGAGGGCAGCCGTTTCCAAGCTGCTTAAGCCTGATCCAGATTTGGCAGATGCAATATACGAGAAGTGTAAGAATATTGGGAATTGGCATGGAGTTATCCCAAAAATTTGGCCCAATGCTAAGTACATCATTTCTATCATGACAGGGGCCATGGAGCCTTATCTGAGGAAACTGAGACATTATGCAGGCAATTTGCCATTGTTGGCTTCAGAGTATGGGGCTACTGAAGGTTGGATTGGTGCCAATATAGATCCCACATCCTCACCAGAAAATACAATTTTTACAGTGGTTCCCAATATTGGATATTTTGAATTTATTCCTCTTCATCTGCGTCTGGGAGACTGGAAATTAGGTGAAACTGTAGCTACTGCTGATTATATAGAATCAGAACCTGTGAGTTTGACAGAAGTGAAGATTGGGCAGCAATATGAGGTGGTTTTGACAACATTTGCTGGGCTCTATAGGTACAGGCTTGGTGATGTCGTGAAAGTTACCAGCTTTTACAATTCTAGTCCGCAGCTGCAATTCATTTGCCGAAGGAACCTCCTCCTTACAGTCAATATTGACAAGACAACCGAGAAAGATCTACAAATATCTGTTGATAAGGCCACAGAGCTCTTAAAGGAAGAAAATGTGGATTTGGTTGATTTCACAAGCTATGCTGATCTATCAACTGAGCCAGGTCACTATGTAATATTTTGGGAGCTTAGTGACAGATTAAATGAGGAGATTCTTAAGAGATGTTGCTCAACAATGGACGAGACTTTTATTGATCCAGGTTATCTTGGTTCCAGAAAAGCAAAAACTATTGGGCCTCTCGAAATTCGTATTGTCGAGAAAGGTACATTCCGGAAAATTATAGATCACTACATGAGTCGTGGAGGAGCAGTGAACCAGTTCAAAATCCCCAGATGCATCTCCACTAGCCAGGATCTGTTTGACATCCTCAACAAAAATGTAATTCAAACTTGTTTCAGCACACTTTTCTCATGATTTAGGTGATCATATGGCATGAACAACGTGC

Ace file of the UniGene sp_v3.0_unigene11197

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable indole-3-acetic acid-amido synthetase GH3.5 n=3 Tax=Oryza sativa RepID=GH35_ORYSJ	-	-	0.0	58%
FL-Next	sp=Probable indole-3-acetic acid-amido synthetase GH3.5; Oryza sativa subsp. japonica (Rice).	-	-	0.0	52%
Sma3	GH3 family protein	-	-	3.652e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.303e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.303e-07	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.303e-07	%

Source	Gene names
Sma3	AT2G46370; AT4g03400; At2g46370; At4g03400; At4g37390; CF4; F4C21.36; F6G17.40; F9H3.1; FIN219; GH3-10; GH3-11; GH3-12; GH3-13; GH3-2; GH3.12; GH3.2; GH3.3; GH3.5; GSVIVT00026000001; GSVIVT00026990001; JAR4; JAR6; LOC_Os01g12160; LOC_Os05g50890; LOC_Os11g

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-
Sma3	protein adenylylation	GO:0018117	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46370.4	JAR1 Auxin-responsive GH3 family protein chr2:19034233-19036369 FORWARD LENGTH=586	52%
RefSeq	Arabidopsis thaliana	NP_001078069.1	putative auxin-responsive protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002320183.1	GH3 family protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6I581

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MPEMPNQVITYEQVIDEFEAMTTDAESVQRKILKEILERNSGTEYLQKWNLNGRIDDPQHFKSCVPLVTHADLEPYIQRIADGDPSxxxxGTTNGKRKQIPFNEDLLASTFQIYYISGAYRSRLFPIKPGGRVLEFFYGSNQSYTKGGLLASTATSNIYHSESFKLYKKNIQILGCSPDEVIFGSDCRQSMYCHLLCGLLYSNEVQYMSSTFSYGIVEAFRTFEQVWQQLCGDIREGRLNEKITVTPMRAAVSKLLKPDPDLADAIYEKCKNIGNWHGVIPKIWPNAKYIISIMTGAMEPYLRKLRHYAGNLPLLASEYGATEGWIGANIDPTSSPENTIFTVVPNIGYFEFIPLHLRLGDWKLGETVATADYIESEPVSLTEVKIGQQYEVVLTTFAGLYRYRLGDVVKVTSFYNSSPQLQFICRRNLLLTVNIDKTTEKDLQISVDKATELLKEENVDLVDFTSYADLSTEPGHYVIFWELSDRLNEEILKRCCSTMDETFIDPGYLGSRKAKTIGPLEIRIVEKGTFRKIIDHYMSRGGAVNQFKIPRCISTSQDLFDILNKNVIQTCFSTLFS*

Protein Length: 579

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGCTGCCTCTGCCTCTGCTGCTGATTCGACATCGATATCGACATGTCTGTGGCTTGTTTCAGAGAAAACTCCCACGTCGTTTTCTTGGCATCGTTGTATGCTCTGCAATCGAAGGCGACCTGTCAGAAAAGATCAAGGAAGAGGAGGTGATATTGTATTAGTTTAACTTGGTTTGCTTCTTCTACCCAACTCCCCCAACTGGGACAGAGCAAAGTTCAGGAGAGGGAATGTCCATACACAGTACTGGAAATTAGGAAGCTTTTATGGCGATTGCACAGCGAAAGTGCCAGTTCTGAGCCAGGAAATCTGCGGGAGTGAGGTAGAGAAAATAGCAAAAGGAATAAGTGTTTCGAAG_-_ATGCCGGAGATGCCCAATCAGGTGATAACCTACGAGCAAGTAATCGATGAATTCGAGGCAATGACTACGGATGCTGAGAGTGTTCAGAGGAAAATACTGAAGGAAATCCTGGAACGTAACAGCGGGACTGAATATTTGCAGAAGTGGAATCTCAATGGAAGGATCGACGATCCCCAACACTTCAAATCATGCGTTCCTTTGGTAACTCATGCCGACTTGGAGCCCTACATCCAGAGAATTGCAGATGGGGACCCCTCGxxxxxxxxxxxxGGAACTACAAATGGCAAACGGAAACAGATACCATTCAATGAAGACTTGCTTGCATCAACATTCCAGATCTATTATATTTCAGGCGCTTATAGATCTCGGTTATTTCCAATCAAGCCTGGGGGAAGAGTCCTTGAGTTTTTCTATGGTAGCAACCAATCTTACACCAAGGGGGGCTTACTAGCTTCTACAGCAACCTCAAATATATATCATAGTGAATCTTTTAAATTATATAAGAAGAACATCCAGATCTTGGGATGCAGCCCAGATGAGGTTATATTTGGGTCTGATTGTCGGCAATCCATGTACTGCCATCTTTTATGTGGGCTTCTCTATTCAAATGAGGTACAATATATGTCATCAACTTTTTCATACGGTATTGTAGAAGCTTTTCGGACCTTTGAGCAAGTCTGGCAACAGCTTTGTGGTGATATTAGGGAAGGAAGACTCAATGAGAAAATCACAGTGACCCCTATGAGGGCAGCCGTTTCCAAGCTGCTTAAGCCTGATCCAGATTTGGCAGATGCAATATACGAGAAGTGTAAGAATATTGGGAATTGGCATGGAGTTATCCCAAAAATTTGGCCCAATGCTAAGTACATCATTTCTATCATGACAGGGGCCATGGAGCCTTATCTGAGGAAACTGAGACATTATGCAGGCAATTTGCCATTGTTGGCTTCAGAGTATGGGGCTACTGAAGGTTGGATTGGTGCCAATATAGATCCCACATCCTCACCAGAAAATACAATTTTTACAGTGGTTCCCAATATTGGATATTTTGAATTTATTCCTCTTCATCTGCGTCTGGGAGACTGGAAATTAGGTGAAACTGTAGCTACTGCTGATTATATAGAATCAGAACCTGTGAGTTTGACAGAAGTGAAGATTGGGCAGCAATATGAGGTGGTTTTGACAACATTTGCTGGGCTCTATAGGTACAGGCTTGGTGATGTCGTGAAAGTTACCAGCTTTTACAATTCTAGTCCGCAGCTGCAATTCATTTGCCGAAGGAACCTCCTCCTTACAGTCAATATTGACAAGACAACCGAGAAAGATCTACAAATATCTGTTGATAAGGCCACAGAGCTCTTAAAGGAAGAAAATGTGGATTTGGTTGATTTCACAAGCTATGCTGATCTATCAACTGAGCCAGGTCACTATGTAATATTTTGGGAGCTTAGTGACAGATTAAATGAGGAGATTCTTAAGAGATGTTGCTCAACAATGGACGAGACTTTTATTGATCCAGGTTATCTTGGTTCCAGAAAAGCAAAAACTATTGGGCCTCTCGAAATTCGTATTGTCGAGAAAGGTACATTCCGGAAAATTATAGATCACTACATGAGTCGTGGAGGAGCAGTGAACCAGTTCAAAATCCCCAGATGCATCTCCACTAGCCAGGATCTGTTTGACATCCTCAACAAAAATGTAATTCAAACTTGTTTCAGCACACTTTTCTCATGA___TTTAGGTGATCATATGGCATGAACAACGTGC

Fln Alignment:

Contig11197___VITYEQVIDEFEAMTTDAESVQRKILKEILERNSGTEYLQKWNLNGRIDDPQHFKSCVPLVTHADLEPYIQRIADGDPSPILxxxxxxxxxLFSGTTNGKRKQIPFNEDLLASTFQIYYISGAYRSRLFPIKPGGRVLEFFYGSNQSYTKGGLLASTATSNIYHSESFKLYKKNIQILGCSPDEVIFGSDCRQSMYCHLLCGLLYSNEVQYMSSTFSYGIVEAFRTFEQVWQQLCGDIREGRLNEKITVTPMRAAVSKLLKPDPDLADAIYEKCKNIGNWHGVIPKIWPNAKYIISIMTGAMEPYLRKLRHYAGNLPLLASEYGATEGWIGANIDPTSSPENTIFTVVPNIGYFEFIPLHLRLGDWKLGETVATADYIESEPVSLTEVKIGQQYEVVLTTFAGLYRYRLGDVVKVTSFYNSSPQLQFICRRNLLLTVNIDKTTEKDLQISVDKATELLKEENVDLVDFTSYADLSTEPGHYVIFWELSDRLNEEILKRCCSTMDETFIDPGYLGSRKAKTIGPLEIRIVEKGTFRKIIDHYMSRGGAVNQFKIPRCISTSQD-LFDILNKNVIQTCFSTLF
Q6I581_______________ICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTD-AESYKSCIPLCVHNDIEPYIQRIVDGDTSPVVxxxxxxxxxLSSGTTHGKPKFIPFNDELLETTLQIYRTSYAFRNREYPIGQG-KALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLEKPIGEET--ENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAY

SNPs (tot: 4)

Position	A %	C %	T %	Probability
186	50		50	1.0
268	25		75	0.996473
271		75	25	0.996473
870		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain