SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11196

Length: 1141 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11196 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=3 Tax=Pinus RepID=Q4PNY9_PINTB	-	-	83%
FL-Next	tr=Tau class glutathione S-transferase; Pinus tabuliformis (Chinese pine) (Pinus leucosperma).	-	-	83%
Sma3	Glutathione S-transferase GSTU6	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	1.704e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.704e-32	%

Source	Gene names
Sma3	AT1G10360; At1g10360; At1g59670; At1g59700; At1g69930; At1g69930/T17F3_4; B1064G04.4; B1144D11.26; Dcarg-1; ERD9; F23H11.1; GST; GST 18; GST1a; GST1b; GST1c; GST2; GST29; GST30; GST30b; GSTU6; GSTa; GSVIVT00000143001; GSVIVT00008584001; GSVIVT00008591001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, omega-class	IPR005442	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10370.1	GST30, ATGSTU17, GST30B, ERD9 Glutathione S-transferase family protein chr1:3397274-3398273 REVERSE LENGTH=227	50%
RefSeq	Arabidopsis thaliana	NP_172508.4	glutathione S-transferase [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002332367.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PNY9

Fln msg:

Fln protein: MATEGEKGQVKLLGATLSPFVVRVCIALALKGIDYEFIQESMHPKSELLVKSNPVHKKIPVLIHNGKPVCESMIIVQYIDEAWGNKAPNLMPEDPYDRANARFWAAFVDDKLFPCLRGVFTGQGEQLQKAVEDSVTNFLLIEEALRTNQCFAGKAYFGGDQIGLIDIALGGLSAFIKGVEKATESVLIDPEKMPLLSAWMDRFCKIDVVKEVMPDPAEYIYLLGEPG*

Protein Length: 229

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATATCCGAGATAGAAGAGGCAGACTCATAAAATTCGAAATACATTTTCAGTGCA_-_ATGGCTACCGAGGGAGAAAAGGGGCAAGTAAAGCTGTTGGGTGCGACTCTGAGTCCCTTCGTGGTGCGGGTTTGCATAGCCCTGGCTCTTAAAGGTATCGATTACGAGTTCATCCAAGAGAGTATGCATCCTAAGAGCGAGCTGCTGGTGAAATCAAACCCTGTTCACAAGAAGATTCCAGTGCTTATCCACAATGGAAAGCCTGTTTGTGAATCCATGATTATTGTGCAATACATCGACGAGGCGTGGGGCAATAAGGCTCCCAATCTTATGCCCGAAGATCCATATGACCGAGCCAATGCTCGCTTTTGGGCTGCCTTTGTAGACGATAAGCTCTTTCCCTGTCTGCGAGGAGTTTTCACTGGCCAAGGCGAGCAGCTACAGAAAGCAGTAGAAGATAGTGTTACAAACTTTCTGTTGATAGAGGAAGCCCTGCGAACCAACCAGTGCTTCGCAGGAAAAGCGTATTTTGGAGGGGATCAGATCGGCTTGATTGACATCGCATTGGGTGGTTTGTCGGCGTTTATTAAAGGCGTCGAGAAGGCTACCGAGAGCGTTTTAATAGATCCAGAGAAAATGCCGTTGTTGAGCGCATGGATGGATCGATTCTGTAAAATCGATGTAGTGAAAGAAGTGATGCCAGATCCGGCGGAATATATATATCTGTTAGGAGAGCCAGGATGA___TTTCACCACCTACTGCTAATTAGGGCAAACCATGCCGGTCTTATACGCTGAGGACAGACAGAAAGATTATATTTAAGATGAGTGTTATTCATAGTCAGTGTCTTTTTGTTCAGCTGGTCTTGAAGTATAGCTGTTTTATGTTAATTAGTGTGAATAATGCTTTGGCGAATCTCGCCGGTACTATATCTAGCATTCCTCTGTTCAATGTACATTATTTAATCGCAACAAGTTTTTGCTGGATCTCTCCGATACTGTCGCTGGTATCGCCCTGTTCAATATGTGTTGATTACGAATGTAATAGAAGATAATGAAGAATGTAACAAGTACATTATTTAGAATGAAATGCAGTCCTATGTTCAATGTACATTATTTATTCAC

Fln Alignment:

Contig11196___MATEGEKGQVKLLGATLSPFVVRVCIALALKGIDYEFIQESMHPKSELLVKSNPVHKKIPVLIHNGKPVCESMIIVQYIDEAWGNKAPNLMPEDPYDRANARFWAAFVDDKLFPCLRGVFTGQGEQLQKAVEDSVTNFLLIEEALRTNQCFAGKAYFGGDQIGLIDIALGGLSAFIKGVEKATESVLIDPEKMPLLSAWMDRFCKIDVVKEVMPDP---AEYI
Q4PNY9_______________MAREGEKGQVKLLGATLSPFVVRVRIALALKGIDYEFIQEDLETKSELLLQSNPVYKQIPVLVHNGKPVCESMIIVQYIEEAWDNKAPNLMPKDPYDRAIARFWAAFIDDKLFPSTRAVFTGQGEQLQKAVEDSVTNFLLIEEALRTNRCFAGKAYFGGDEIGLIDIALGGMSTFIKALEKATNTILIDPKKMPLLTAWMDRFCKSDGVKEVMPDPVKHAEYL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
39		33		66	0.997452
195	85		14		0.993533
205	14		85		0.993533
215	14		85		0.993533
221	14		85		0.993533
250		14	85		0.993533
262		16	83		0.994512
584		40	60		1.0
597	66		33		0.997452
628		66		33	0.997452
780		20		80	0.995493
917		83	16		0.999991
926		83	16		0.999991
936	83	16			0.999991
992	76		23		1.0
1021	15		84		0.999986
1026		72		27	1.0
1046		10		90	0.90298
1059	70	10		20	0.999998
1066			90	10	0.90298
1071		10	90		0.90298
1072	90		10		0.90298
1073	90		10		0.90298
1074	90			10	0.90298
1083		90	10		0.90298
1085	90	10			0.90298
1087		10		90	0.90298
1088	10			90	0.90298
1094	88			11	0.923564
1120		71		28	1.0
1121		71	28		1.0
1122	42	57			1.0
1123	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain