SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11194

Length: 2298 nt

UniGene Fasta

>sp_v3.0_unigene11194
AATGTCTCCTTATCTTCCTCAGAATGGTACTAGTGGTGGTGGAAGCCCCTTTTCTGAGGGTGGAGCGCTATATGCCTTGGGACTTATACATGCAAACCACGGAGAAGGGATCAAGCAGTTTCTTCGTGAAAGCTTACGCAGTGCAAATCTTGAAGTAATTCAACATGGTGCATGCTTGGGTTTGGGATTGGCTGCTTTAGGAACTGCTGATGAAGAGATTTATGAGGATATCAAGAATATTCTCTATTTAGATAGTGCAGTTGCTGGGGAAGCTGCAGGTATTAGCATGGGTCTCCTTATGGTTGGGACTGCAAGTGAAAAAGCTAGTGAAATGCTTGCATATGCACATGACACACAACATGAGAAGATTATCAGGGGTTTGGCACTTGGTATAGCCCTTACTGTTTATGGAAGAGAAGAGGAGGCAGATACCCTTATTGAACAAATGACACGGGATCAAGATCCTATTTTGCGATACGGTGGAATGTATGCACTTGCCCTGGCGTACTGTGGAACAGCAAATAACAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGTGATGATGTTAGAAGAACTGCAGTGTTGGCCCTTGGGTTTGTTTTATACTCAGAACCTGAGCAGACACCACGGGTTGTATCTTTGCTTTCCGAGTCTTACAATCCACATGTTAGGTATGGCGCAGCTATAGCAGTGGGTGTTTCTTGTGCTGGTACAGGATTGAGTGAAGCCATTTCACTGCTAGAGCCTTTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGAGCTCTAATAGCAATGGCTATGGTTCTTGTTCAGACAAATGAATCACGTGAACCACGTGTAGGTAACTTCAGGCGTCAACTGGAGAAAATTATTCTCGATAAGCATGAGGATACCATGAGTAAGATGGGTGCAATTTTGGCTTCTGGTATTTTAGATGCAGGTGGCAGGAATGTAACTATTAAAGTACTTTCCAGGTCTAAGCATGATAGAATGACTGCTGTTATTGGAATGGCAGTCTTCACACAGTTTTGGTATTGGTATCCACTTATCTACTTTTTGAGCCTGTCTTTTGCACCAACTGCTTTTATTGGGCTTAACTATGACTTGAAGACCCCAAAGTTTGAATTTATATCTGATGCAAAACCTTCATTGTTTGAGTATCCTCGCCCAATGGCACCTCCAACAACCACCTCAACTGCAAAGTTGCCAACAGCTGTTTTGTCAACATCAGCAAGGGCTAAAACGAGAGGAAAAAAAGAAACAGATAATAAAAGTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTGTATCTGCTAATGGAAAGGGCTCAAACTCTAGTGATAAGGATGGTGAACCAATGCAGGTTGATAGTACATCTGACAAGAAAATTGAAGTGGAACCATCTTCAGAGGTTCTTACGAATCCGGCTAGGGTTGTACCAGCACAAGAAAAGTATATCAAGTTTTTTGAAGGGAGCAGATATATGCCAATTAGGCCAGCACGCTCAGGTTTTGTTTTATTAAGGGACACACAGCCATCTGAACCAGAAGTACTTGTTTCGAGTGATGCACCTGCATCATCTCCATCAACAGGAAGTGTCTCGAATGCTCAGTTGCCTGCATCAGCTGTTGAGGATGGAGAACCACAACCACCACAACCATTTGAATTCAATCCTTGAGTATATGTATATCGGTGATTGCATGGGCTTACACCCGTTGCTGGAACTTAAAAGAGAATCGCTCCAAAATTGCTGAATTGTTTGTCCAAAATTCTTTGGTTATGTATGCTTTGCTGCGCAGTTTTGGCCTCATGCTGTAAAATGTTTTTCTGCTGGCAGGCAACTATTTTTTAACATTGGTCAAGGCGGTTAATGTGTGGATCCAACAAAGAGGCTAAAAGCCTTATGACGGATTCTGGTTTAATGTACGAGGCATAATTTATTATTTTAGCTTCTGACACATTTCCAAATTTTATAGATTTTCTATCGTGTGTTTAGGTTATTAAATATTCGTGATGATGAGGATTACAGTTAAGAATGCCATTTATGAATGCTCAGAATAGCTGTGAGAAAACAGTGGAGAAGGACGAGTTAAAGTTGGAAGGAATTAGTTTAATGGCATATGGACGGAATGTCGCCGTTTCAAGGTTGGCTGAGTGAAGCATATTCTTCCCGAAAGCTTTTTAAAAAGCGAGTGACCAAACGTAACTTCTAGAAAGCTATTTTCTGTTTTGTCTCCAACTTATGAGCTCAAGAATCCAATACATTGTGGTTTG

Ace file of the UniGene sp_v3.0_unigene11194

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb\|AAC04490.1\| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gb\|AAM20712.1\| 26S proteasome regulatory subunit [Arabidopsis thaliana] gb\|AEC08730.1\| 26S proteasome regu	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	26S proteasome regulatory subunit	-	-	2.063e-12	-

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; CHLREDRAFT_192526; CYP87D8; F13M7.20; GSVIVT00009324001; GSVIVT00018545001; GSVIVT00031868001; GSVIVT00035526001; MICPUCDRAFT_30827; MICPUN_60141; OSJNBa0060N03.12; OSTLU_39213; Os04g0608500; Os08g0224700; OsI_17319; OsI_

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr2:13880189-13885464 FORWARD LENGTH=1004	77%
RefSeq	Arabidopsis thaliana	NP_180832.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002300175.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: your sequence is shorter than subject: 567 - 773

Fln protein: MSPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKQFLRESLRSANLEVIQHGACLGLGLAALGTADEEIYEDIKNILYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYCGTANNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRVVSLLSESYNPHVRYGAAIAVGVSCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNESREPRVGNFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIKVLSRSKHDRMTAVIGMAVFTQFWYWYPLIYFLSLSFAPTAFIGLNYDLKTPKFEFISDAKPSLFEYPRPMAPPTTTSTAKLPTAVLSTSARAKTRGKKETDNKSTVEKLSGDDGNTSVSANGKGSNSSDKDGEPMQVDSTSDKKIEVEPSSEVLTNPARVVPAQEKYIKFFEGSRYMPIRPARSGFVLLRDTQPSEPEVLVSSDAPASSPSTGSVSNAQLPASAVEDGEPQPPQPFEFNP*

Protein Length: 568

Fln nts: AATGTCTCCTTATCTTCCTCAGAATGGTACTAGTGGTGGTGGAAGCCCCTTTTCTGAGGGTGGAGCGCTATATGCCTTGGGACTTATACATGCAAACCACGGAGAAGGGATCAAGCAGTTTCTTCGTGAAAGCTTACGCAGTGCAAATCTTGAAGTAATTCAACATGGTGCATGCTTGGGTTTGGGATTGGCTGCTTTAGGAACTGCTGATGAAGAGATTTATGAGGATATCAAGAATATTCTCTATTTAGATAGTGCAGTTGCTGGGGAAGCTGCAGGTATTAGCATGGGTCTCCTTATGGTTGGGACTGCAAGTGAAAAAGCTAGTGAAATGCTTGCATATGCACATGACACACAACATGAGAAGATTATCAGGGGTTTGGCACTTGGTATAGCCCTTACTGTTTATGGAAGAGAAGAGGAGGCAGATACCCTTATTGAACAAATGACACGGGATCAAGATCCTATTTTGCGATACGGTGGAATGTATGCACTTGCCCTGGCGTACTGTGGAACAGCAAATAACAAGGCTATCCGACGCCTTCTACACTTTGCTGTCTCAGATGTCAGTGATGATGTTAGAAGAACTGCAGTGTTGGCCCTTGGGTTTGTTTTATACTCAGAACCTGAGCAGACACCACGGGTTGTATCTTTGCTTTCCGAGTCTTACAATCCACATGTTAGGTATGGCGCAGCTATAGCAGTGGGTGTTTCTTGTGCTGGTACAGGATTGAGTGAAGCCATTTCACTGCTAGAGCCTTTGACATCAGATGTAGTTGATTTTGTTCGTCAAGGAGCTCTAATAGCAATGGCTATGGTTCTTGTTCAGACAAATGAATCACGTGAACCACGTGTAGGTAACTTCAGGCGTCAACTGGAGAAAATTATTCTCGATAAGCATGAGGATACCATGAGTAAGATGGGTGCAATTTTGGCTTCTGGTATTTTAGATGCAGGTGGCAGGAATGTAACTATTAAAGTACTTTCCAGGTCTAAGCATGATAGAATGACTGCTGTTATTGGAATGGCAGTCTTCACACAGTTTTGGTATTGGTATCCACTTATCTACTTTTTGAGCCTGTCTTTTGCACCAACTGCTTTTATTGGGCTTAACTATGACTTGAAGACCCCAAAGTTTGAATTTATATCTGATGCAAAACCTTCATTGTTTGAGTATCCTCGCCCAATGGCACCTCCAACAACCACCTCAACTGCAAAGTTGCCAACAGCTGTTTTGTCAACATCAGCAAGGGCTAAAACGAGAGGAAAAAAAGAAACAGATAATAAAAGTACAGTTGAAAAATTATCTGGTGATGATGGTAATACATCTGTATCTGCTAATGGAAAGGGCTCAAACTCTAGTGATAAGGATGGTGAACCAATGCAGGTTGATAGTACATCTGACAAGAAAATTGAAGTGGAACCATCTTCAGAGGTTCTTACGAATCCGGCTAGGGTTGTACCAGCACAAGAAAAGTATATCAAGTTTTTTGAAGGGAGCAGATATATGCCAATTAGGCCAGCACGCTCAGGTTTTGTTTTATTAAGGGACACACAGCCATCTGAACCAGAAGTACTTGTTTCGAGTGATGCACCTGCATCATCTCCATCAACAGGAAGTGTCTCGAATGCTCAGTTGCCTGCATCAGCTGTTGAGGATGGAGAACCACAACCACCACAACCATTTGAATTCAATCCTTGA___GTATATGTATATCGGTGATTGCATGGGCTTACACCCGTTGCTGGAACTTAAAAGAGAATCGCTCCAAAATTGCTGAATTGTTTGTCCAAAATTCTTTGGTTATGTATGCTTTGCTGCGCAGTTTTGGCCTCATGCTGTAAAATGTTTTTCTGCTGGCAGGCAACTATTTTTTAACATTGGTCAAGGCGGTTAATGTGTGGATCCAACAAAGAGGCTAAAAGCCTTATGACGGATTCTGGTTTAATGTACGAGGCATAATTTATTATTTTAGCTTCTGACACATTTCCAAATTTTATAGATTTTCTATCGTGTGTTTAGGTTATTAAATATTCGTGATGATGAGGATTACAGTTAAGAATGCCATTTATGAATGCTCAGAATAGCTGTGAGAAAACAGTGGAGAAGGACGAGTTAAAGTTGGAAGGAATTAGTTTAATGGCATATGGACGGAATGTCGCCGTTTCAAGGTTGGCTGAGTGAAGCATATTCTTCCCGAAAGCTTTTTAAAAAGCGAGTGACCAAACGTAACTTCTAGAAAGCTATTTTCTGTTTTGTCTCCAACTTATGAGCTCAAGAATCCAATACATTGTGGTTTG

Fln Alignment:

Contig11194___MSPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKQFLRESLRSANLEVIQHXXXXXXXXXXXXXXDEEIYEDIKNILYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYCGTANNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRVVSLLSESYNPHVRYGAAIAVGVSCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNESREPRVGNFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIKVLSRSKHDRMTAVIGMAVFTQFWYWYPLIYFLSLSFAPTAFIGLNYDLKTPKFEFISDAKPSLFEYPRPMAPPTTTSTAKLPTAVLSTSARAKTRGKKETDNKSTVEKLSGDDGNTSVSANG-KGSNSSDKDGEPMQVDSTSDKKIEVEPSSEVLTNPARVVPAQEKYIKFFEGSRYMPIRPARSGFVLLRDTQPSEPEVLVSSDAPASSPSTGSVSNAQLPASA--VEDG
B8LQS7_______________MAPYLPQHGSSGGGSPYSEGGALYALGLIHANHGEGIKEFLRESLRSTNVEIIQHGACLGLGLAALGTADEEIYEDVKNVLYTDNAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAM-----DEGNISGEAGPIKGSKSSDKEGEAIQLDNASEKKAEAEPSCEILSNPARVVPAQEKYIKFFEESRYVPIKLMPSGFVLLRDTKPSEPEVFVLTDAPSSLASSGNASIPQAPASAVSVEDG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1130	12	87			0.992554
1131		87		12	0.992554
1132		87		12	0.992554
1295	87		12		0.992554
1314	11		88		0.923564
1799		13		86	0.999973
1861	78		14	7	0.999974
1919			13	86	0.999973
1920	86			13	0.999973
1921	86	13			0.999973
1922	86		13		0.999973
1923	86			13	0.999973
1998	90	10			0.90298
2000	90			10	0.90298
2002	90	10			0.90298
2004			10	90	0.90298
2006		10		90	0.90298
2112	16		83		0.994512
2113	83	16			0.994512
2114	16		83		0.994512
2239	40		60		1.0
2240	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain