SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11187

Length: 2033 nt

UniGene Fasta

>sp_v3.0_unigene11187
ATGGGACAACGGGAGGAGGGGACTGAATCATATTAGCGCCAAGCCCTCTTACGGCACAATGACGCGAATGCTTCTCGGCAATGGCGATGAAGGGTGTTGCAGACCTCTGCATGTGGTTGCGTTTGCATATCCCTTGCAGGGCCACATTATTCCCATGTTTAATTTCGCAAAGAAGCTTGCAGCCAAGGGCGTTATTGTCACGTTTGTTAATACAGAATCTTGCCATGCCAACATCATCAAGTCGCATAACGGCGAGGATCCTGTGATCTCCTTTGCCAGGAGCTCGGGCCTCGATATGCGATCTGCTCAGGTTGGCGATGGACTGCCCATGGAATTTGACAGATCGTTGAATCATGATGAGTTTATGGAATCCTTGCGGACTAATATGATTCGGCATGTTGAAGAGTTCCTCGCCCATCTGAGTACAAAGGAGCCCCCTGTATCATGTTTCATTGCTGACACCTTTTTTGTTTGGTGTGATAGCGTCGCCAAGAAATTTCAGATTCCACATGCTTCATTCTGGACAGAGCCAGCGGTTGTTTTCTCCATCTATTATCATTGGGATCTGCTGGTGAAAAATGGCCATCATCCATTTCTCAACAATGAGCATGAGAGGTTAATAAACTACATCCCTGGAGTTTCAGCTTTGAAGATAACAGATCTTCCCTCTTATCTTCAGGAGTTGGATGTGTCAACTGTCGTACACAAAATAATATACGCAGCCTTTCAATCTGCTCATGGAGCCGATTGGGTTGTCTCTAATACAGTGGAGGAATTTGAGATCCGAACGATTGCAGAATTGCAGTTGACAAAGCCATTTTGGTCAGTTGGTCCTCTGCTTCCTTCAGCCTTTCTTGATGACAAAAGTGACAAGGACGAGACAAAAGGGACCAGCATGTGGCCTGAGTCGGACTGTACCAGCTGGCTTGACTCCATGCCCAACAGCTCAGTCATCTATATCTCGTTCGGCAGCTATGCTCATGTTTCTAGAGACCAAATTGAAGAAATGGCCATGGGATTATTAGAAAGCAAGCAACCGTTCATTTGGGTGCTTCGTCCCGATATCGTTGAGTCCGGAGCTGAAAATATTCTGCCGGAAGGATTTGTGGAGGGAACCAGAGATCAGGGTTTGGTGGTTCAATGGTCATCTCAACTAAAAGTTTTATCTCATCCTTCTGTGGGTGGATTTCTGACACACTGTGGATGGAACTCCATTCTTGAGAGCTTATGGTTGGGAAAACCCATGTTGGCGTTTCCATTATTGACCGATCAATGCGTAAACAGAAGGTTGATTGTAGAAGAATGGGGAGTGGCCATGGATTTGGGTGGGAGTTGCAGGATGTTCCAAAACAATAGAGCACTGTTGGGAAGAGATGAAGTCGCAAGAACACTCAAGAAATTCATGGATACAGAAGAACGAGATAAGCTGAGATTGAAGATCGAGCCTATGAGAAAGGTTGTGAAGGAGGTTGTGATGCTAGACGAAGGGTCCTCTAACAGGAATTTAGATTTATTTGTCGAATCTTTAAGGGCCAAAAATCAGACCTAAGTTCAAGGATAAGTATTTGCAAGGTCTCGATTAAGTCTCTCTGCACAGTTCCATTAGTTCTTAGATTAAATCCGTCTTGTATTCCGCCAATCTTCCTCTACTTTCATGTTTTAAATATCTTCATTTACATGTATATAAAATATCTTCCTTCCTTTGTTTGTAGGGTATATCCTAGACCCATGTCCTCCCCCGAGAAGATTTTCATGAAATTGTGCGACTCCGGAGAAAATTTTCATGAAATTGTGTGACTTCTGTTAATTGGAGAAATATTTCTCTTTCAGTGTAATAGAATCTAAGTTCTGCCCGGTGTTCACATTGGTTAACTGCAGATTCAGATTTGTAAGCTGTAGAACCGCGACAGATAAAGGAGGTTACATGGGGAGAGGGTACACGGGCATGAGTATACAAAGATCATATTAGTGCAGAAATCATTTTTGGTCAAATTAAAATCAATTATATGGTTAGAGAATTAATAAAAGTATGG

Ace file of the UniGene sp_v3.0_unigene11187

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase-like protein [Arabidopsis thaliana] sp\|Q9SJL0.1\|U86A1_ARATH RecName: Full=UDP-glycosyltransferase 86A1 gb\|AAD31582.1\| putative glucosyltransferase [Arabidopsis thaliana] gb\|AAL06924.1\| At2g36970/T1J8.15 [Arabidopsis thaliana] gb\|AA	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	UDP-glucose:glucosyltransferase	-	-	4.019e-07	-

Source	Gene names
Sma3	At2g28080; At2g36970; DcT11; GSVIVT00022190001; GSVIVT00023233001; LOC_Os10g30560; Os10g0442300; OsI_33780; OsJ_31675; POPTRDRAFT_768420; RCOM_0472870; UGT86A4; UGT86A5;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	tRNA (guanine-N-7) methyltransferase	IPR003358	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36970.1	UDP-Glycosyltransferase superfamily protein chr2:15529050-15530712 FORWARD LENGTH=490	0.0	45%
RefSeq	Arabidopsis thaliana	NP_181234.1	UDP-glycosyltransferase-like protein [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU7

Fln msg:

Fln protein: MTRMLLGNGDEGCCRPLHVVAFAYPLQGHIIPMFNFAKKLAAKGVIVTFVNTESCHANIIKSHNGEDPVISFARSSGLDMRSAQVGDGLPMEFDRSLNHDEFMESLRTNMIRHVEEFLAHLSTKEPPVSCFIADTFFVWCDSVAKKFQIPHASFWTEPAVVFSIYYHWDLLVKNGHHPFLNNEHERLINYIPGVSALKITDLPSYLQELDVSTVVHKIIYAAFQSAHGADWVVSNTVEEFEIRTIAELQLTKPFWSVGPLLPSAFLDDKSDKDETKGTSMWPESDCTSWLDSMPNSSVIYISFGSYAHVSRDQIEEMAMGLLESKQPFIWVLRPDIVESGAENILPEGFVEGTRDQGLVVQWSSQLKVLSHPSVGGFLTHCGWNSILESLWLGKPMLAFPLLTDQCVNRRLIVEEWGVAMDLGGSCRMFQNNRALLGRDEVARTLKKFMDTEERDKLRLKIEPMRKVVKEVVMLDEGSSNRNLDLFVESLRAKNQT*

Protein Length: 498

Fln nts: ATGGGACAACGGGAGGAGGGGACTGAATCATATTAGCGCCAAGCCCTCTTACGGCACA_-_ATGACGCGAATGCTTCTCGGCAATGGCGATGAAGGGTGTTGCAGACCTCTGCATGTGGTTGCGTTTGCATATCCCTTGCAGGGCCACATTATTCCCATGTTTAATTTCGCAAAGAAGCTTGCAGCCAAGGGCGTTATTGTCACGTTTGTTAATACAGAATCTTGCCATGCCAACATCATCAAGTCGCATAACGGCGAGGATCCTGTGATCTCCTTTGCCAGGAGCTCGGGCCTCGATATGCGATCTGCTCAGGTTGGCGATGGACTGCCCATGGAATTTGACAGATCGTTGAATCATGATGAGTTTATGGAATCCTTGCGGACTAATATGATTCGGCATGTTGAAGAGTTCCTCGCCCATCTGAGTACAAAGGAGCCCCCTGTATCATGTTTCATTGCTGACACCTTTTTTGTTTGGTGTGATAGCGTCGCCAAGAAATTTCAGATTCCACATGCTTCATTCTGGACAGAGCCAGCGGTTGTTTTCTCCATCTATTATCATTGGGATCTGCTGGTGAAAAATGGCCATCATCCATTTCTCAACAATGAGCATGAGAGGTTAATAAACTACATCCCTGGAGTTTCAGCTTTGAAGATAACAGATCTTCCCTCTTATCTTCAGGAGTTGGATGTGTCAACTGTCGTACACAAAATAATATACGCAGCCTTTCAATCTGCTCATGGAGCCGATTGGGTTGTCTCTAATACAGTGGAGGAATTTGAGATCCGAACGATTGCAGAATTGCAGTTGACAAAGCCATTTTGGTCAGTTGGTCCTCTGCTTCCTTCAGCCTTTCTTGATGACAAAAGTGACAAGGACGAGACAAAAGGGACCAGCATGTGGCCTGAGTCGGACTGTACCAGCTGGCTTGACTCCATGCCCAACAGCTCAGTCATCTATATCTCGTTCGGCAGCTATGCTCATGTTTCTAGAGACCAAATTGAAGAAATGGCCATGGGATTATTAGAAAGCAAGCAACCGTTCATTTGGGTGCTTCGTCCCGATATCGTTGAGTCCGGAGCTGAAAATATTCTGCCGGAAGGATTTGTGGAGGGAACCAGAGATCAGGGTTTGGTGGTTCAATGGTCATCTCAACTAAAAGTTTTATCTCATCCTTCTGTGGGTGGATTTCTGACACACTGTGGATGGAACTCCATTCTTGAGAGCTTATGGTTGGGAAAACCCATGTTGGCGTTTCCATTATTGACCGATCAATGCGTAAACAGAAGGTTGATTGTAGAAGAATGGGGAGTGGCCATGGATTTGGGTGGGAGTTGCAGGATGTTCCAAAACAATAGAGCACTGTTGGGAAGAGATGAAGTCGCAAGAACACTCAAGAAATTCATGGATACAGAAGAACGAGATAAGCTGAGATTGAAGATCGAGCCTATGAGAAAGGTTGTGAAGGAGGTTGTGATGCTAGACGAAGGGTCCTCTAACAGGAATTTAGATTTATTTGTCGAATCTTTAAGGGCCAAAAATCAGACCTAA___GTTCAAGGATAAGTATTTGCAAGGTCTCGATTAAGTCTCTCTGCACAGTTCCATTAGTTCTTAGATTAAATCCGTCTTGTATTCCGCCAATCTTCCTCTACTTTCATGTTTTAAATATCTTCATTTACATGTATATAAAATATCTTCCTTCCTTTGTTTGTAGGGTATATCCTAGACCCATGTCCTCCCCCGAGAAGATTTTCATGAAATTGTGCGACTCCGGAGAAAATTTTCATGAAATTGTGTGACTTCTGTTAATTGGAGAAATATTTCTCTTTCAGTGTAATAGAATCTAAGTTCTGCCCGGTGTTCACATTGGTTAACTGCAGATTCAGATTTGTAAGCTGTAGAACCGCGACAGATAAAGGAGGTTACATGGGGAGAGGGTACACGGGCATGAGTATACAAAGATCATATTAGTGCAGAAATCATTTTTGGTCAAATTAAAATCAATTATATGGTTAGAGAATTAATAAAAGTATGG

Fln Alignment:

Contig11187___CRPLHVVAFAYPLQGHIIPMFNFAKKLAAKGVIVTFVNTESCHANIIKSHNGEDPVISFARSSGLDMRSAQVGDGLPMEFDRSLNHDEFMESLRTNMIRHVEEFLAHLSTKEPPVSCFIADTFFVWCDSVAKKFQIPHASFWTEPAVVFSIYYHWDLLVKNGHHPFLNNE--HERLINYIPGVSALKITDLPSYLQELDVSTVVHKIIYAAFQSAHGADWVVSNTVEEFEIRTIAELQLTKPFWSVGPLLPSAFLDDKSDKDETKGTSMWPESDCTSWLDSMPNSSVIYISFGSYAHVSRDQIEEMAMGLLESKQPFIWVLRPDIVESGAENILPEGFVEGTRDQGLVVQWSSQLKVLSHPSVGGFLTHCGWNSILESLWLGKPMLAFPLLTDQCVNRRLIVEEWGVAMDLGGSCRMFQNNRALLGRDEVARTLKKFMDTEERDKLRLKIEPMRKVVKEVVMLDEGSSNRNLDLFVESLRAKNQT
B8LNU7_______________CRPLHVVAVPLPVQGHITPMFNFAKKLAAKGVTVTFVNTEACYANITKARNGEDP-FSHAQSLGLDIRSAQISDGLPLEFDRSLNAEEFIESFETNMIPHVEELISHLKEEEPPVLCIIADSFFVWLDRVAKKYGISHASFWTEAAMVFSIYYHWDLLVENGHSPFVNKEDDHENLINYIPGLSDLKTTDLPSYFQELDLSSRTHDILYEAFQSVRGADWIISNTVEDLESRTIAELQSIKPFWSVGPLLPSAFQEDLNK--ETSRTNMWPESDCTGWLDSKPENSVIYISFGSYAHLSRAQIEEVALGLLESKQPFIWVLRPDIIASGIHDILPEGFLEETKDKGLVVQWSSQLEVLSHPSVGGFLTHCGWNSILESLSSGVPMLAFPLFTDQCTNRWLIVEEWGVAMDLAGNSGSFQNYKPLVGREEIARTLKKFMGEEEGRKLRLKVKPIREVLKK-AMLDSGTSNKNLDLFVEALRAKNHT

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
54		66	33		0.997452
57		66	33		0.997452
80	66		33		0.997452
93	33	66			0.997452
292		75		25	0.996473
331	66		33		0.997452
447	25	75			0.996473
675	33		16	50	1.0
676	33	66			1.0
677	16			83	0.994512
678			33	66	1.0
679		50		50	1.0
682			83	16	0.994512
685	16			83	0.994512
1197	33		66		0.997452
1541	25		75		0.996473
1559	75		25		0.996473
1576	66			33	0.997452
1577		33		66	1.0
1854		80	20		0.995493
1860	25		75		0.996473
1865	50		50		1.0
1866		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain