SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11178

Length: 2087 nt

UniGene Fasta

>sp_v3.0_unigene11178
CGGGAAGTAAATAATTTATCGCTTTAATTTTTTTGTCTCGGCCCCACTGCGAATTTGGCGACTTTTACATTAAAGAAAAGGTGGCTCATGACTCCACTCCACTCCACACTGGACTGTCTTTGTGTTTAAGCTACTGGCAACAATAATGAAATCTCTACAGCGACATTGAATTGCAAAGTCAGCTTCATCATGATATGCTATGTAATAAGTATGCCAGTCCTGCAAGATCTTTAGTGTATGAAGAGCTGCAACCTCGGCACGGACCTGATTTTTAACGGAAAACGAGCTTCTCTGGCAATTTTGTCACGATCCTAGCTTTTCGTAGACGAGTTGTTTTTCCGGAGACCCTAGGACATGTGGAAAATCAGCTTCTCTGGAAATTTATCAAGATTCTTGCTTTTCGTAGCAGAGTTGTTATTCCGGAGACCCTAGGACATGTATTGATCACATTCTCATTGGCTCTTGATAGAAATTTGACTCTATTTTGAGAATTTTCCAAATCCATTTCTCTACTCTATTGTGGATTCCTTGCTGAAAAAGCTAAGTTTTGATACTCGAGGACAATATATTTCGCTTCTACTTGTTCCATAGTTTTCTTCATATCAAGCCTTTCTTTGTGCTTGCTCATCTGTTGTTGCGGCCAGCCCTAAGTGTTCATTTGAATGGTGCTTTCCGGATCTTAAACATAAATTCGTTATCAACTGCATTTCAAAAGCTCGGTTTCTCCCGTAGTATTCTTGCCTCCGTCGAGGCCTGAATCGGTCGATTGTGGTTATTGAAGATACATTTTAGGTTTTAAGATGATGTCATATGCGGGTGAAGAACAACCAGAAGATTACCTCTTCAAAATTGTTCTAATAGGCGACTCTGCTGTGGGAAAATCCAATCTACTTGCAAGATATGCCCGGAACGAGTTCTATCCCAATTCCAAATCCACGATCGGAGTGGAATTTCAGACACAGACCATGGAAATCGATGGCAAAGAGATCAAAGCACAGATCTGGGACACGGCCGGCCAGGAGCGCTTCAGGGCCGTGACCTCGGCATATTACAGAGGAGCCGTGGGAGCGCTTGTCGTGTATGACATCAGTCGGCGCCAGACATTCGACAATATTTCTCGGTGGCTCGATGAGCTGCACACGCATTCTGATATGAATGTGGTTACAGTAATAGTTGGCAACAAAACTGACCTTATGGATGCCAGAGAAGTCTCTACAGAAGAAGGAGCAGCATTGGCAGAGGCTCAGAACTTATATTTTGTAGAGACCTCAGCACTGGATTCTACAAATGTCCAACTAGCTTTTCAAACAGTTGTCAAAGAAATTTACAACATTCTGAGTCGGAAAGTATTGTCATGTCAGGAACAGAAACTTGAATCAAAGTTAACTAATGGAAAAACAGTCATTTTGCATGAAGCAGAAAGTGAATCTACCATGAAACAAACTGGAAAGTTCTGGTGTTGTTCTGGTTAGCTTTGTTTATTTCAATACTTTCCAAGGGGTTCACAAGGTCTTTTGCAATGTCTAGCCAGATTATTCCATGTGAAAGAATTCTTAAAAGTGTGATTCGGTATGAAGTTTTGCTCTACTACTGGTTATACAGCAGCTTGAAACAAAACTTGGGAATTCTCATTTTTGGCTGGTTTTGAAGCAATTTCAGATTGAAGGGAAATGCTGATTCATAGCAGTGATATGTGAGCAAGTCATATTTTCTCTGCCCTTGATCTATCTTATGTTCTGTTCTGCTTCTGTTATCAATTTTTAGCAGAGTTCAAATCCAAGATTAAGAATGCCATTTGATTCAGTTAAAGGCCTGGAAACACTTTTTCCCATCCAGCTTTGGCATGCAATATCTATTCTCGGGCAGTTCATTGTACTTGTGTGCTTTTATAATACATTAGACTTGCCATTTGTGTTGGATACGTCAGCTTTCAGGCAGCAGCAGCAACAAGGAGAATATTTTATGCATTATTTAAGTTGACGAGAAATAATATTGAGCGTTGTATTTGTCATTCTCATTTGGGTTTGGACATTGTACAAGCAGTTATATGTAAATTCTTGATACCAAAAAGTTAGAAATTTTAAACC

Ace file of the UniGene sp_v3.0_unigene11178

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to guanine nucleotide regulatory protein n=1 Tax=Vitis vinifera RepID=UPI0001985FCE	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative Rab GTP-binding protein Rab11a	-	-	-

Source	Gene names
Sma3	P0455H11.113; Os07g0634200;

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47520.1	AtRABA5a, RABA5a RAB GTPase homolog A5A chr5:19277596-19278366 REVERSE LENGTH=221	73%
RefSeq	Arabidopsis thaliana	NP_199563.1	RAB GTPase homolog A5A [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002307897.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACS6

Fln msg:

Fln protein: MMSYAGEEQPEDYLFKIVLIGDSAVGKSNLLARYARNEFYPNSKSTIGVEFQTQTMEIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDNISRWLDELHTHSDMNVVTVIVGNKTDLMDAREVSTEEGAALAEAQNLYFVETSALDSTNVQLAFQTVVKEIYNILSRKVLSCQEQKLESKLTNGKTVILHEAESESTMKQTGKFWCCSG*

Protein Length: 225

Fln nts: CGGGAAGTAAATAATTTATCGCTTTAATTTTTTTGTCTCGGCCCCACTGCGAATTTGGCGACTTTTACATTAAAGAAAAGGTGGCTCATGACTCCACTCCACTCCACACTGGACTGTCTTTGTGTTTAAGCTACTGGCAACAATAATGAAATCTCTACAGCGACATTGAATTGCAAAGTCAGCTTCATCATGATATGCTATGTAATAAGTATGCCAGTCCTGCAAGATCTTTAGTGTATGAAGAGCTGCAACCTCGGCACGGACCTGATTTTTAACGGAAAACGAGCTTCTCTGGCAATTTTGTCACGATCCTAGCTTTTCGTAGACGAGTTGTTTTTCCGGAGACCCTAGGACATGTGGAAAATCAGCTTCTCTGGAAATTTATCAAGATTCTTGCTTTTCGTAGCAGAGTTGTTATTCCGGAGACCCTAGGACATGTATTGATCACATTCTCATTGGCTCTTGATAGAAATTTGACTCTATTTTGAGAATTTTCCAAATCCATTTCTCTACTCTATTGTGGATTCCTTGCTGAAAAAGCTAAGTTTTGATACTCGAGGACAATATATTTCGCTTCTACTTGTTCCATAGTTTTCTTCATATCAAGCCTTTCTTTGTGCTTGCTCATCTGTTGTTGCGGCCAGCCCTAAGTGTTCATTTGAATGGTGCTTTCCGGATCTTAAACATAAATTCGTTATCAACTGCATTTCAAAAGCTCGGTTTCTCCCGTAGTATTCTTGCCTCCGTCGAGGCCTGAATCGGTCGATTGTGGTTATTGAAGATACATTTTAGGTTTTAAG_-_ATGATGTCATATGCGGGTGAAGAACAACCAGAAGATTACCTCTTCAAAATTGTTCTAATAGGCGACTCTGCTGTGGGAAAATCCAATCTACTTGCAAGATATGCCCGGAACGAGTTCTATCCCAATTCCAAATCCACGATCGGAGTGGAATTTCAGACACAGACCATGGAAATCGATGGCAAAGAGATCAAAGCACAGATCTGGGACACGGCCGGCCAGGAGCGCTTCAGGGCCGTGACCTCGGCATATTACAGAGGAGCCGTGGGAGCGCTTGTCGTGTATGACATCAGTCGGCGCCAGACATTCGACAATATTTCTCGGTGGCTCGATGAGCTGCACACGCATTCTGATATGAATGTGGTTACAGTAATAGTTGGCAACAAAACTGACCTTATGGATGCCAGAGAAGTCTCTACAGAAGAAGGAGCAGCATTGGCAGAGGCTCAGAACTTATATTTTGTAGAGACCTCAGCACTGGATTCTACAAATGTCCAACTAGCTTTTCAAACAGTTGTCAAAGAAATTTACAACATTCTGAGTCGGAAAGTATTGTCATGTCAGGAACAGAAACTTGAATCAAAGTTAACTAATGGAAAAACAGTCATTTTGCATGAAGCAGAAAGTGAATCTACCATGAAACAAACTGGAAAGTTCTGGTGTTGTTCTGGTTAG___CTTTGTTTATTTCAATACTTTCCAAGGGGTTCACAAGGTCTTTTGCAATGTCTAGCCAGATTATTCCATGTGAAAGAATTCTTAAAAGTGTGATTCGGTATGAAGTTTTGCTCTACTACTGGTTATACAGCAGCTTGAAACAAAACTTGGGAATTCTCATTTTTGGCTGGTTTTGAAGCAATTTCAGATTGAAGGGAAATGCTGATTCATAGCAGTGATATGTGAGCAAGTCATATTTTCTCTGCCCTTGATCTATCTTATGTTCTGTTCTGCTTCTGTTATCAATTTTTAGCAGAGTTCAAATCCAAGATTAAGAATGCCATTTGATTCAGTTAAAGGCCTGGAAACACTTTTTCCCATCCAGCTTTGGCATGCAATATCTATTCTCGGGCAGTTCATTGTACTTGTGTGCTTTTATAATACATTAGACTTGCCATTTGTGTTGGATACGTCAGCTTTCAGGCAGCAGCAGCAACAAGGAGAATATTTTATGCATTATTTAAGTTGACGAGAAATAATATTGAGCGTTGTATTTGTCATTCTCATTTGGGTTTGGACATTGTACAAGCAGTTATATGTAAATTCTTGATACCAAAAAGTTAGAAATTTTAAACC

Fln Alignment:

Contig11178___MMSYAGEEQPEDYLFKIVLIGDSAVGKSNLLARYARNEFYPNSKSTIGVEFQTQTMEIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDNISRWLDELHTHSDMNVVTVIVGNKTDLMDAREVSTEEGAALAEAQNLYFVETSALDSTNVQLAFQTVVKEIYNILSRKVLSCQEQKLESKLTNGKTVILHEAESESTMKQTGKFWCCSG
D5ACS6_______________MMSYAGEEQTEDYLFKIVLIGDSAVGKSNLLARYARNEFYPNSKSTIGVEFQTQTMQIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQTFDNISRWLDELHTHSDMNVVTVIVGNKTDLLDAREVSTEEGAALAEAQNIYFVETSALDSTNVQLAFQTVVKEIYNILSRKVLSCQEQKLESKISNGKTVVLQEAESESTAKQTGKLWCCSG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
93		80	20		0.995493
94			20	80	0.995493
95		80	20		0.995493
96		80	20		0.995493
237	16		83		0.994512
282	75		25		0.996473
306		85		14	0.993533
314	14			85	0.993533
335			14	85	0.993533
382	10			90	0.90298
384			10	90	0.90298
385	90		10		0.90298
386			10	90	0.90298
800	85		14		0.993533
819		14		85	0.993533
1209	91		8		0.999766
1462		11		88	0.923564
1477		11		88	0.923564
1483		12		87	0.992554
1602	85		14		0.999981
1641		16		83	0.999991

SSRs (tot: 2)

Start position	End position	Sequence	Length
91	107	ACTCC ACTCC ACTCC AC	17
1935	1946	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain