SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11172

Length: 2718 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene11172
GGCAATTGTGGTGGTGTTAAAACAGTGGAAGTGGAAATGTGGCATGCCAACACAGACTAATGCGGAGCAGTCAAACCCATCGAGATGATGAAGACGGGGAAGATGCTAAAATTTTCAAACTCTATTTTTTATGATAAGGCAACGCGTTGCTTCGTATGGCAGGCTGTACGCCAAGGAAGGGCACCACCACCTGAAGGGAGAATTGTGATATTATGAGGAGTCACAGGCTTTCACAACCACAGAAAGCGTTCGAAATTTAAGCAGATTAGGAGCTCTCGCAAGCAATTGACCTCGGGACCTTGGACGCTACCAGCAGTCTTGCAAATCCGTTAGTTTCTGAATTTCCCCTATTTTGACCAAAGGCAGATCGCGCTCGTTCTTCTCGGATCCTCTGCGCATGCAATTCACGCACGCATTCATTCTTTACCGATCGTCCGAGAGCCTTTCTCAAGTCCGGGATTCGAATTCTGCGAATTCCTTTCCTTTTGTTCTTTTGTTTCATAATTTTGTACAGATCTTTGCGATTATAGCATGGGCAATTGCTGTGGATCTGCCGCCGGCTCCAAGAAGCCGAAGCCGAATCCCTTTGCGGAGGATCACCCTCATTACAACACCACCAGCGTTAATAACACCACCACCAACAACAAGAAACCTGCGCGACCCTCGCGGCGGAGCGTGCTGTTCGAAATTTGCGCCGGTTATGAGCTCTCGGACGCGTTTGAGCTCGGGCGAGAGCTGGGACGGGGGGAATTCGGGATTACGTACCTGTGCAGCGACAAGGAGACCGGGCAGGTCTTAGCGTGTAAATCTATTTCGAAAAAGAAGCTCAGGACCGCCGTCGATGTCGAGGATGTGAGGCGTGAAGTGCAGATCATGAAGCATTTGCCCGATCACCCCAACATCGTCAGTCTCAAGGCAACTTATGAGGACGAGACCGCTGTTCATCTCGTCATGGAGCTCTGTGAGGGGGGCGAACTCTTTGACAGGATCGTCGCACGGGGCCATTATACAGAAAGAGCTGCCGCTGTTGTTACCAAAACAATCGTGGAAGTTGTACAGATTTGCCACAAGCATGGGGTAATGCATAGAGACCTCAAGCCGGAGAATTTTTTATTTTCAAACAAAAAGGAGAATTCTCCTTTAAAGGCCATTGATTTTGGCCTCTCTATATTTTTTAAACCTGGAGATCGTTTTAATGAAATAGTTGGCAGTCCATATTACATGGCTCCTGAGGTACTTAAACGAAATTATGGACCAGAGGTGGATGTATGGAGTGCCGGGGTCATTCTTTATATTTTATTGTGTGGAGTGCCACCGTTTTGGGCTGAAACGGAGCAAGGGGTTGCACAGGCCATTATACGCTCTAATTTAGATTTTAAAAGAGATCCATGGCCAAAAATTTCTGAGCAGGCAAAGGATCTTGTCAGGCAGATGCTGGAGCCAAATCCTAAGCTTCGACCAACAGCTCAGCAAGTGCTTGAACATACATGGCTTCAAAATTCCAAGAAGGTTCCTAATGTTCCTCTTGGGGATACTGTCAGAGCAAGGCTAAAACAATTTTCTGCAATGAATAAGTTAAAGAAGCAAGCACTGAAGGTAGTGGCTGAATATTTATCTGTGGAAGAAGTTGCTGGTATCAAAGATATGTTTGAAATGATGGACACAGATAAAAATGGGACTATATCCTTAGATGAGCTGAGGGCAGGCATGCAGAAGCTTTCTGTTAATATGACCGAATCAGAAGTTCTGATGTTAATGGAAGCTGCAGACGTTGATGGTAATGGTGTTCTAGACTATAGAGAATTTGTTGCAGCTTCAGTTCATTGGCAAAGGATGGGCAATGATGAGCATTTGCATAAGGCATTTACATACTTTGACAAAAATGGTAGTGGATATATTGAAATCGAGGAGCTTAGAGAAGCCTTGGTGGATGATTTGGGTTCCAATGACGCAGACGTTCTGGATGATATTGTCCGTGAAGTAGATACTGATAAGGATGGTCGCATCAGTTATGAAGAGTTTGCGGCAATGATGAAAACTGGCACTGACTGGAGGAAGGCCTCACGACAGTACTCACGGGAAAGGTTCAGTAGCCTGAGTATGAGATTGTTCAAGGACGGGTCCTTACAGATGGGCCAGACAGATAAAAATAACGTAATCATGGCTGCGAATGAAGTGCACGCCTAATAATGAAACACAACAAAATTAGTTTTCTGGGAGCATTTTTTTAAAAGGGCAATTCTTTTTTTCTTTGCATTTGATGGTTGGGTGATGATATTTCTGGATTTTTATATTGTGTAATGGGCCTGGCCTGGTTACCGGGCTTTCACATTGAGGGTTGCCGTCGGTATTCGCCGATGATATCCTGTTTTACGCGCAACAGTTGTTAATTTCTGGATATAGGGCGTCGTATATGATCTTTCAAGCTGTTACTTTATGCTCTGTTCGATGCATACAGACTATTTGAAGCTTCATATTACGTGCAGCTGCTCAAAGGTGTAATGGAAGGGTGCGTAGCGGCATTCCTGCTTTGATTAGCATAAAATCGGGCATCTTTTGTGCATGGAGACCATTGGTTCTGTTTGAAATCCTGGAAAATGTAAAGCTTACCCAGCTTACTCAATACGTGGCTATGTAATATTTTATTTTCTGCAACTGGGTTTTTTTGGCCTTTCAGTTAGTAAAGTGGTAAAGCGGTTTTATCTTCCAGTCGTCGTT

Ace file of the UniGene sp_v3.0_unigene11172 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium dependent protein kinase 14 n=2 Tax=Populus trichocarpa RepID=B9GEZ7_POPTR	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Sma3	Calcium-dependent protein kinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	6.198e-40	-
Sma3	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	2.3e-27	-

Source	Gene names
Sma3	6J23.10; AK1; ATEM1.10; At1g18890; At1g35670; At1g50700; At1g74740; At2g17290; At2g31500; At2g41860; At3g10660; At3g20410; At3g51850; At3g57530; At4g04720; At4g21940; At4g23650; At4g35310; At5g04870; At5g12180; At5g12480; At5g19360; At5g19450; CDPK; CDPK1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	calcium-dependent protein kinase C activity	GO:0004698	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	regulation of anion channel activity	GO:0010359	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12480.1	CPK7 calmodulin-domain protein kinase 7 chr5:4047817-4050035 REVERSE LENGTH=535	69%
RefSeq	Arabidopsis thaliana	NP_568281.1	calmodulin-domain protein kinase 7 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002313342.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg:

Fln protein: MGNCCGSAAGSKKPKPNPFAEDHPHYNTTSVNNTTTNNKKPARPSRRSVLFEICAGYELSDAFELGRELGRGEFGITYLCSDKETGQVLACKSISKKKLRTAVDVEDVRREVQIMKHLPDHPNIVSLKATYEDETAVHLVMELCEGGELFDRIVARGHYTERAAAVVTKTIVEVVQICHKHGVMHRDLKPENFLFSNKKENSPLKAIDFGLSIFFKPGDRFNEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSNLDFKRDPWPKISEQAKDLVRQMLEPNPKLRPTAQQVLEHTWLQNSKKVPNVPLGDTVRARLKQFSAMNKLKKQALKVVAEYLSVEEVAGIKDMFEMMDTDKNGTISLDELRAGMQKLSVNMTESEVLMLMEAADVDGNGVLDYREFVAASVHWQRMGNDEHLHKAFTYFDKNGSGYIEIEELREALVDDLGSNDADVLDDIVREVDTDKDGRISYEEFAAMMKTGTDWRKASRQYSRERFSSLSMRLFKDGSLQMGQTDKNNVIMAANEVHA*

Protein Length: 553

Fln nts: GGCAATTGTGGTGGTGTTAAAACAGTGGAAGTGGAAATGTGGCATGCCAACACAGACTAATGCGGAGCAGTCAAACCCATCGAGATGATGAAGACGGGGAAGATGCTAAAATTTTCAAACTCTATTTTTTATGATAAGGCAACGCGTTGCTTCGTATGGCAGGCTGTACGCCAAGGAAGGGCACCACCACCTGAAGGGAGAATTGTGATATTATGAGGAGTCACAGGCTTTCACAACCACAGAAAGCGTTCGAAATTTAAGCAGATTAGGAGCTCTCGCAAGCAATTGACCTCGGGACCTTGGACGCTACCAGCAGTCTTGCAAATCCGTTAGTTTCTGAATTTCCCCTATTTTGACCAAAGGCAGATCGCGCTCGTTCTTCTCGGATCCTCTGCGCATGCAATTCACGCACGCATTCATTCTTTACCGATCGTCCGAGAGCCTTTCTCAAGTCCGGGATTCGAATTCTGCGAATTCCTTTCCTTTTGTTCTTTTGTTTCATAATTTTGTACAGATCTTTGCGATTATAGC_-_ATGGGCAATTGCTGTGGATCTGCCGCCGGCTCCAAGAAGCCGAAGCCGAATCCCTTTGCGGAGGATCACCCTCATTACAACACCACCAGCGTTAATAACACCACCACCAACAACAAGAAACCTGCGCGACCCTCGCGGCGGAGCGTGCTGTTCGAAATTTGCGCCGGTTATGAGCTCTCGGACGCGTTTGAGCTCGGGCGAGAGCTGGGACGGGGGGAATTCGGGATTACGTACCTGTGCAGCGACAAGGAGACCGGGCAGGTCTTAGCGTGTAAATCTATTTCGAAAAAGAAGCTCAGGACCGCCGTCGATGTCGAGGATGTGAGGCGTGAAGTGCAGATCATGAAGCATTTGCCCGATCACCCCAACATCGTCAGTCTCAAGGCAACTTATGAGGACGAGACCGCTGTTCATCTCGTCATGGAGCTCTGTGAGGGGGGCGAACTCTTTGACAGGATCGTCGCACGGGGCCATTATACAGAAAGAGCTGCCGCTGTTGTTACCAAAACAATCGTGGAAGTTGTACAGATTTGCCACAAGCATGGGGTAATGCATAGAGACCTCAAGCCGGAGAATTTTTTATTTTCAAACAAAAAGGAGAATTCTCCTTTAAAGGCCATTGATTTTGGCCTCTCTATATTTTTTAAACCTGGAGATCGTTTTAATGAAATAGTTGGCAGTCCATATTACATGGCTCCTGAGGTACTTAAACGAAATTATGGACCAGAGGTGGATGTATGGAGTGCCGGGGTCATTCTTTATATTTTATTGTGTGGAGTGCCACCGTTTTGGGCTGAAACGGAGCAAGGGGTTGCACAGGCCATTATACGCTCTAATTTAGATTTTAAAAGAGATCCATGGCCAAAAATTTCTGAGCAGGCAAAGGATCTTGTCAGGCAGATGCTGGAGCCAAATCCTAAGCTTCGACCAACAGCTCAGCAAGTGCTTGAACATACATGGCTTCAAAATTCCAAGAAGGTTCCTAATGTTCCTCTTGGGGATACTGTCAGAGCAAGGCTAAAACAATTTTCTGCAATGAATAAGTTAAAGAAGCAAGCACTGAAGGTAGTGGCTGAATATTTATCTGTGGAAGAAGTTGCTGGTATCAAAGATATGTTTGAAATGATGGACACAGATAAAAATGGGACTATATCCTTAGATGAGCTGAGGGCAGGCATGCAGAAGCTTTCTGTTAATATGACCGAATCAGAAGTTCTGATGTTAATGGAAGCTGCAGACGTTGATGGTAATGGTGTTCTAGACTATAGAGAATTTGTTGCAGCTTCAGTTCATTGGCAAAGGATGGGCAATGATGAGCATTTGCATAAGGCATTTACATACTTTGACAAAAATGGTAGTGGATATATTGAAATCGAGGAGCTTAGAGAAGCCTTGGTGGATGATTTGGGTTCCAATGACGCAGACGTTCTGGATGATATTGTCCGTGAAGTAGATACTGATAAGGATGGTCGCATCAGTTATGAAGAGTTTGCGGCAATGATGAAAACTGGCACTGACTGGAGGAAGGCCTCACGACAGTACTCACGGGAAAGGTTCAGTAGCCTGAGTATGAGATTGTTCAAGGACGGGTCCTTACAGATGGGCCAGACAGATAAAAATAACGTAATCATGGCTGCGAATGAAGTGCACGCCTAA___TAATGAAACACAACAAAATTAGTTTTCTGGGAGCATTTTTTTAAAAGGGCAATTCTTTTTTTCTTTGCATTTGATGGTTGGGTGATGATATTTCTGGATTTTTATATTGTGTAATGGGCCTGGCCTGGTTACCGGGCTTTCACATTGAGGGTTGCCGTCGGTATTCGCCGATGATATCCTGTTTTACGCGCAACAGTTGTTAATTTCTGGATATAGGGCGTCGTATATGATCTTTCAAGCTGTTACTTTATGCTCTGTTCGATGCATACAGACTATTTGAAGCTTCATATTACGTGCAGCTGCTCAAAGGTGTAATGGAAGGGTGCGTAGCGGCATTCCTGCTTTGATTAGCATAAAATCGGGCATCTTTTGTGCATGGAGACCATTGGTTCTGTTTGAAATCCTGGAAAATGTAAAGCTTACCCAGCTTACTCAATACGTGGCTATGTAATATTTTATTTTCTGCAACTGGGTTTTTTTGGCCTTTCAGTTAGTAAAGTGGTAAAGCGGTTTTATCTTCCAGTCGTCGTT

Fln Alignment:

Contig11172___MGNCCGSAAGSKKP-KPNPFAEDHPHYXXXXXXXXXXXNKKPARPSRRSVLFEICAGYELSDAXXXXXXXXXXXXGITYLCSDKETGQVLACKSISKKKLRTAVDVEDVRREVQIMKHLPDHPNIVSLKATYEDETAVHLVMELCEGGELFDRIVARGHYTERAAAVVTKTIVEVVQICHKHGVMHRDLKPENFLFSNKKENSPLKAIDFGLSIFFKPGDRFNEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSNLDFKRDPWPKISEQAKDLVRQMLEPNPKLRPTAQQVLEHTWLQNSKKVPNVPLGDTVRARLKQFSAMNKLKKQALKVVAEYLSVEEVAGIKDMFEMMDTDKNGTISLDELRAGMQKLSVNMTESEVLMLMEAADVDGNGVLDYREFVAASVHWQRMGNDEHLHKAFTYFDKNGSGYIEIEELREALVDDLGSNDADVLDDIVREVDTDKDGRISYEEFAAMMKTGTDWRKASRQYSRERFSSLSMRLFKDGSLQMGQTDK
C0PQ38_______________MGNCCGSAVGKKKRVKASPAGPN----GRKRDNVGGDVAKIP--------VLKGCLEQSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTGTDWRKASRHYSRGRFNNLSIKLVRDGSLQMENNER

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1334	83		16		0.994512
1378		85		14	0.993533
1379		85		14	0.993533
1380		85		14	0.993533
1381		85		14	0.993533
1382	14			85	0.993533
1387	14	85			0.993533
1389	14	14	71		0.984337
1390		14		85	0.993533
1391		28		71	1.0
1594		33		66	0.997452
1813	14	85			0.993533
1816	85			14	0.993533
2457		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain