SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11166

Length: 2810 nt

UniGene Fasta

>sp_v3.0_unigene11166
AGAATTTGTTGTGTAACCCCTTCTATCCTAGACCTTAAAGCAAACAACCATTTTTCTCTTCCCTTTCTGGGGTTCCAGCTCTACAACTTCCTCTTCCTCTGGCGTGCAAAATGCACCTTCAGGACATCGCTTCGACCAACAGGTCCCTCGCTTCCTCTTCCAACAATGCCGACACCCCTCTCAGCAAAAGATAGGCTAACTGTATGTGCTCTCTGACAGGTTTGTACTCTACGACTCCTTTGGCAATGGATACAACGCCTGGATATTCTAACCTCTACCACTCATTCCTATTTCAGTAGGTTTTAGGTTTTGAAGATCTATTGAGAAGTGGTATTTGCAGTCTCTGCTCTAGCCAGGGAACAAAGGACTATTCAATCGGCGTGGGTGTTTAGAGGGGAAAAAAGAAGTTATGGCTGAACTGGAGCATTTGCTGCTAGAAGCAGCTGGTCGAACATCTACCAATGATGGAAAGCAAAACCGAAATCCTGCGAAAGGGAGACTGGAAGATTCTGATTCAGATGATGGCAGTGACTCGAAATACATTGATGACGATGATTCAGATGATGCTGGGACAGCAAATAGGAAGGCTTCTGGGTCAAGAATGCCCCTGAAAAAGAGATTTGATTCTGGTAACAAGGATGATGATGACACGGGTCACCGTGATGATTCAGATAGCGAATTATCCATAGGAAGTGATTTATACAAAGATGATGAAGATAGGGAGCAGCTTGGGAAAATGTCTGAACTGGACCGGGAGTTGATATTAGCAGAACGAGCAGAAGCAAGGGATAATTATTTAATGCGTAAAAGGGCTCGCCAAAACGAGATTAGAAATCAACAACGGAAAGAAACAGGGCCTCCATCTTCACGGATGCGCTCTTCTGTGAAATCGACAAGGTCTGTAAAAGAAAATGCTTTGAGTGAATTGGTAGCAAGGCGGCAGAAAGCACAGGATTCTGACATTCAGCGTAAGCGGAGAGATAATACTGGTTCATCTAAGGGGCGGGATTCTTCACCTAGTAGAAGAAAATCTCATGCGAGTCCGAGCCTTAGTTTGTCATCCTCTAGTGAAGGAGAAGGAAGTGGAAGCAGTGGCGAAGAATCAGATAGTGATGGTGATGGTCCCGGCTCTGCTGACACTCCCAGCTTTGAAGATATTAGAAGCATAACAATAAGGAGATCAAAACTTGCCAAGTGGTTTATGGAACCATTCTTTGAGAATATCATTGTGGGCTGCTTTGTAAGAATTGGGATAGGAATGTCCAGGTCAGGACAGAGTACTTACCGTCTTTGCATGGTAAAAAATGTTGATGCGACAGACCCTGATAAACAATACAAGTTTGAGAACCGCACCACATACAAGTATTTGAATTGTTTCTGGGGTAGCGAGAGCAGTGCAGCAAGATGGCAGATGGCCAGGGTGTCTGATTCACCTCCACTTGAGAAAGAGTTTTCAGATTGGGAACGGGAAGTAGAACGCAGTGGTGGTCGGATGATTAGTCGAGCAGAAGTTGAGGAAAAAATAAATGCGCTAAAAAAGATAAATCAATTTGTGTATTCTGCAGAAACTGTAAAACAAATGTTGCAGGAAAAGAAGTTGGCTTCCAAAAGGCCATCGAATGTGGCTGCTGAAAAGGACAGGGTTAGAAGAGAGATGGAGCTGGCGGAGAGCAGGCATGATTATTCAGAAGTTGAGAGAATTAAAGTGAGATTGAAGGAACTAGAAGTCCTTTCTCTTCAGAGCAAAAGCAAGGATGCAAAAGCCTTGATGCTAGCAGAAATGAATAAGAAAACAAGGCTGAAAATTTCAAGAACGCTTCTGAGATCAAGCCTCTAAACCTTAATCTTAAAGCAGGTGAAGCAGGGTATGATCCTTTCACTCGGCGTTGGACTCAATCTCAAAATTATTATGATACAAAAGCGAAGGTTGCTGAAGACAACACTGATGCGAACAAAGAGGCAGATGCAGCCAAAGTAGAGGAAGCCATAGCAATAGAAACTGCTGAGGATGATGGAAAGCTTGTCGACACTGATGCTCCTGTATCAGAAGATGCAAAGGTGTATTCTTTGCATGATTTTGAACTTCCAATTTCACTTGCTGGACTGCAGAAGTATGGGGGTGCTCAAGGGGCCCCTTTAGCTTTTATGGCTAGAAAGCAGAAGATTGAGTCAACTTGTGGAGTGCAAGTTCCTAGCAATGATGGAAGGAGGCATAGTCTGACATTAACTGTGAATGATTACAAGCGTAGAAGAGGCCTGCTGTGAAAATAAATAATGATATTTTCTCTGCTTGTTGGTTTCCCCATGTAATTTTTATATGAAAGATTCGGAAATTTCCTTTTGGGATTGCCAGAAACATAGTGCGGATTTGTTTAGCTAGGTCGTGTAACTTAGATAAAATTTATGAAGTTGATAAGGACTATTTTCCTATTCTCTAGAGAGATAGTATCAAAGCTTGTTCTCGGAGGAATTTGAACGCGAGCGGTGCGAGATTAAGTCTGTATGTATGTAATTAGTGGCTTTTAATATAAAATTTGAAGATCAGTAGTTGTTTTATCACAAATATAGTGATGCTTCAGTATTTTACCACTTTAATCAGTGGTACCGTTGTATACTGTGGCTGCCGTTCTTTCAAATCTAGTGTTTTGTAGTAGTAAAGGTCAGTGCAAGGTGTTGGTTGGCAGTGACCTGCATAGATGTTGATTACAACAGACTTGGGTTGGGTTAAATTGTTTGATGTTCACACTGACCTGAGTTTGTATTTTTATTGGCTGATTAATAGAGATCTATAACATCTAGCCTAGTACAGA

Ace file of the UniGene sp_v3.0_unigene11166

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Paf1 complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S430_PHYPA	-	-	0.0	53%
FL-Next	tr=Paf1 complex protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	55%
Sma3	PAF1 complex component	-	-	1.592e-08	-

Source	Gene names
Sma3	At1g61040; GSVIVT00010276001; LOC_Os12g35030; Os12g0535900; OsI_38596; OsJ_36364; PAFD1501; PAFD901; PAFD902; PHYPADRAFT_162718; POPTRDRAFT_555549; POPTRDRAFT_771126; RCOM_0935630; T7P1.17;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	histone modification	GO:0016570	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plus-3	IPR004343	-	0.0	-
Sma3	Plus-3 domain, subgroup	IPR018144	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G61040.1	VIP5 plus-3 domain-containing protein chr1:22483817-22485748 FORWARD LENGTH=643	51%
RefSeq	Arabidopsis thaliana	NP_176299.1	plus-3 domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002316628.1	PAF1 complex component [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9S430

Fln msg: Separated hits, possible frame ERROR between 1786 and 1825, your sequence is longer than subject: 619 - 568

Fln protein: MAELEHLLLEAAGRTSTNDGKQNRNPAKGRLEDSDSDDGSDSKYIDDDDSDDAGTANRKASGSRMPLKKRFDSGNKDDDDTGHRDDSDSELSIGSDLYKDDEDREQLGKMSELDRELILAERAEARDNYLMRKRARQNEIRNQQRKETGPPSSRMRSSVKSTRSVKENALSELVARRQKAQDSDIQRKRRDNTGSSKGRDSSPSRRKSHASPSLSLSSSSEGEGSGSSGEESDSDGDGPGSADTPSFEDIRSITIRRSKLAKWFMEPFFENIIVGCFVRIGIGMSRSGQSTYRLCMVKNVDATDPDKQYKFENRTTYKYLNCFWGSESSAARWQMARVSDSPPLEKEFSDWEREVERSGGRMISRAEVEEKINALKKINQFVYSAETVKQMLQEKKLASKRPSNVAAEKDRVRREMELAESRHDYSEVERIKVRLKELEVLSLQSKSKDAKALMLAEMxxxxxxxxxxxxxxIKPLNLNLKAGEAGYDPFTRRWTQSQNYYDTKAKVAEDNTDANKEADAAKVEEAIAIETAEDDGKLVDTDAPVSEDAKVYSLHDFELPISLAGLQKYGGAQGAPLAFMARKQKIESTCGVQVPSNDGRRHSLTLTVNDYKRRRGLL*

Protein Length: 620

Fln nts: AGAATTTGTTGTGTAACCCCTTCTATCCTAGACCTTAAAGCAAACAACCATTTTTCTCTTCCCTTTCTGGGGTTCCAGCTCTACAACTTCCTCTTCCTCTGGCGTGCAAAATGCACCTTCAGGACATCGCTTCGACCAACAGGTCCCTCGCTTCCTCTTCCAACAATGCCGACACCCCTCTCAGCAAAAGATAGGCTAACTGTATGTGCTCTCTGACAGGTTTGTACTCTACGACTCCTTTGGCAATGGATACAACGCCTGGATATTCTAACCTCTACCACTCATTCCTATTTCAGTAGGTTTTAGGTTTTGAAGATCTATTGAGAAGTGGTATTTGCAGTCTCTGCTCTAGCCAGGGAACAAAGGACTATTCAATCGGCGTGGGTGTTTAGAGGGGAAAAAAGAAGTT_-_ATGGCTGAACTGGAGCATTTGCTGCTAGAAGCAGCTGGTCGAACATCTACCAATGATGGAAAGCAAAACCGAAATCCTGCGAAAGGGAGACTGGAAGATTCTGATTCAGATGATGGCAGTGACTCGAAATACATTGATGACGATGATTCAGATGATGCTGGGACAGCAAATAGGAAGGCTTCTGGGTCAAGAATGCCCCTGAAAAAGAGATTTGATTCTGGTAACAAGGATGATGATGACACGGGTCACCGTGATGATTCAGATAGCGAATTATCCATAGGAAGTGATTTATACAAAGATGATGAAGATAGGGAGCAGCTTGGGAAAATGTCTGAACTGGACCGGGAGTTGATATTAGCAGAACGAGCAGAAGCAAGGGATAATTATTTAATGCGTAAAAGGGCTCGCCAAAACGAGATTAGAAATCAACAACGGAAAGAAACAGGGCCTCCATCTTCACGGATGCGCTCTTCTGTGAAATCGACAAGGTCTGTAAAAGAAAATGCTTTGAGTGAATTGGTAGCAAGGCGGCAGAAAGCACAGGATTCTGACATTCAGCGTAAGCGGAGAGATAATACTGGTTCATCTAAGGGGCGGGATTCTTCACCTAGTAGAAGAAAATCTCATGCGAGTCCGAGCCTTAGTTTGTCATCCTCTAGTGAAGGAGAAGGAAGTGGAAGCAGTGGCGAAGAATCAGATAGTGATGGTGATGGTCCCGGCTCTGCTGACACTCCCAGCTTTGAAGATATTAGAAGCATAACAATAAGGAGATCAAAACTTGCCAAGTGGTTTATGGAACCATTCTTTGAGAATATCATTGTGGGCTGCTTTGTAAGAATTGGGATAGGAATGTCCAGGTCAGGACAGAGTACTTACCGTCTTTGCATGGTAAAAAATGTTGATGCGACAGACCCTGATAAACAATACAAGTTTGAGAACCGCACCACATACAAGTATTTGAATTGTTTCTGGGGTAGCGAGAGCAGTGCAGCAAGATGGCAGATGGCCAGGGTGTCTGATTCACCTCCACTTGAGAAAGAGTTTTCAGATTGGGAACGGGAAGTAGAACGCAGTGGTGGTCGGATGATTAGTCGAGCAGAAGTTGAGGAAAAAATAAATGCGCTAAAAAAGATAAATCAATTTGTGTATTCTGCAGAAACTGTAAAACAAATGTTGCAGGAAAAGAAGTTGGCTTCCAAAAGGCCATCGAATGTGGCTGCTGAAAAGGACAGGGTTAGAAGAGAGATGGAGCTGGCGGAGAGCAGGCATGATTATTCAGAAGTTGAGAGAATTAAAGTGAGATTGAAGGAACTAGAAGTCCTTTCTCTTCAGAGCAAAAGCAAGGATGCAAAAGCCTTGATGCTAGCAGAAATGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATCAAGCCTCTAAACCTTAATCTTAAAGCAGGTGAAGCAGGGTATGATCCTTTCACTCGGCGTTGGACTCAATCTCAAAATTATTATGATACAAAAGCGAAGGTTGCTGAAGACAACACTGATGCGAACAAAGAGGCAGATGCAGCCAAAGTAGAGGAAGCCATAGCAATAGAAACTGCTGAGGATGATGGAAAGCTTGTCGACACTGATGCTCCTGTATCAGAAGATGCAAAGGTGTATTCTTTGCATGATTTTGAACTTCCAATTTCACTTGCTGGACTGCAGAAGTATGGGGGTGCTCAAGGGGCCCCTTTAGCTTTTATGGCTAGAAAGCAGAAGATTGAGTCAACTTGTGGAGTGCAAGTTCCTAGCAATGATGGAAGGAGGCATAGTCTGACATTAACTGTGAATGATTACAAGCGTAGAAGAGGCCTGCTGTGA___AAATAAATAATGATATTTTCTCTGCTTGTTGGTTTCCCCATGTAATTTTTATATGAAAGATTCGGAAATTTCCTTTTGGGATTGCCAGAAACATAGTGCGGATTTGTTTAGCTAGGTCGTGTAACTTAGATAAAATTTATGAAGTTGATAAGGACTATTTTCCTATTCTCTAGAGAGATAGTATCAAAGCTTGTTCTCGGAGGAATTTGAACGCGAGCGGTGCGAGATTAAGTCTGTATGTATGTAATTAGTGGCTTTTAATATAAAATTTGAAGATCAGTAGTTGTTTTATCACAAATATAGTGATGCTTCAGTATTTTACCACTTTAATCAGTGGTACCGTTGTATACTGTGGCTGCCGTTCTTTCAAATCTAGTGTTTTGTAGTAGTAAAGGTCAGTGCAAGGTGTTGGTTGGCAGTGACCTGCATAGATGTTGATTACAACAGACTTGGGTTGGGTTAAATTGTTTGATGTTCACACTGACCTGAGTTTGTATTTTTATTGGCTGATTAATAGAGATCTATAACATCTAGCCTAGTACAGA

Fln Alignment:

Contig11166___MPLKKRFDSGNKXXXXXXXXXXXXSELSIGSDLYKDDEDREQLGKMSELDRELILAERAEARDNYLMRKRARQNEI------RNQQRKETGPPSSRMRSSVKS-TRSVKENALSELVARRQKAQDSDIQRKRRDNTGSSKGRDS-SPSRRK-----SHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTPSFED-IRSITIRRSKLAKWFMEPFFENIIVGCFVRIGIGMSRSGQSTYRLCMVKNVDATDPDKQYKFENRTTYKYLNCFWGSESSAARWQMARVSDSPPLEKEFSDWEREVERSGGRMISRAEVEEKINALKKINQFVYSAETVKQMLQEKKLASKRPSNVAAEKDRVRREMELAESRHDYSEVERIKVRLKELEVLSLQSKSKDAKALMLAEMNxxxxxxxxxxxxxIKPLNLNLKAGEAGYDPFTRRWTQSQNYYDTKAKVAEDNTXXXXXXXXXXXXXXXXXXXXXXXGKLVDTDAPVSEDAKVYSLHDFELPISLAGLQKYGGAQGAPLAF----MARKQKIESTCGVQVPSNDGRRHSLTLTVNDYKRRRGLL
A9S430_______________MPLKKRFE---KDGDDGARDDGYNSEFSYGSDLYRDEEDRHNLAQMTELEREMELADRSEKRDTWLALRKSRGNRQAEFSTPNHRRERDLGPPSSRMRSSVREGTRSKKENALNELVARRQKAQDPSSLRKRGRDSGMTPSREAHSPGRKKPSQSMSFSESDPPSEDDGDSERDDDRSDVGGSGDELEDKGEPEATEDEIKDIVIRRSKLAKWFMEPFFEEIIVGCFVRIGIGVSSSGQSIYRVCQVKNVDAKDPDKQYKFENFMTYKYLNCFWGDESTAARWQMVRASDQPASQKEISDYLRAVDNAKGRRPLKVDVLEKKAAISKVNQFVYSASTVKQMLQEKKMAASRPANVALEKDRLIKELGIAESKGEHAEVEKLQSRLKELELFANQVKSKDAKAMALAEMNxxxxxxxxxxxxxLKPVNTFAKEGDAGYDPFSRRWTRSQNYYQSQPKTEEKETVEGSNAEDGAEKAGIKASEQSEIAKHVESQA-AADRRKLYALHNFVLPISLSKLGNTKGPGGVHQAFVQAYMARKAHLEASCGVQVEQNDGRRHSLTLTVNDYKRRRGLL

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
635	50		50		1.0
694	83			16	0.994512
714	83		16		0.994512
738	83	16			0.994512
740	83			16	0.994512
834			75	25	0.996473
835	75		25		0.996473
836	75		25		0.996473
837	75		25		0.996473
859	33		66		0.997452
895	33		66		0.997452
991	33			66	0.997452
1015			33	66	0.997452
1019		88		11	0.923564
1020		88	11		0.923564
1021			12	87	0.992554
1022	87		12		0.992554
1064		12		87	0.992554
1345		61		38	1.0
1378		57		42	1.0
1444			54	45	1.0
1483		57		42	1.0
1541	16			16	0.988813
1542	83		16		0.994512
1546	80		20		0.995493
1572	85		14		0.993533
1601	83		16		0.994512
1626	85		14		0.993533
1628	11		88		0.923564
1632		88	11		0.923564
1635		88		11	0.923564
1636	11			88	0.923564
1687		33		66	1.0
1802	40	60			1.0
2017		33		66	1.0
2138			66	33	0.997452
2489	27		72		1.0
2549	5		11	83	0.999887
2568	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain