SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11145

Length: 1798 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11145

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to gb\|Y13720 Hap2a transcription factor from Arabidopsis thaliana	-	-	3.0e-35	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Nuclear transcription factor Y subunit A-3	-	-	3.757e-13	-

Source	Gene names
Sma3	AT5G12840; At1g17590; At1g30500; At1g54160; At1g72830; At2g34720; At3g14020; At5g12840; C-HAP2B; CBF-A01; CBF-A22; EMB2220; F15I1.26; F26G16.12; GSVIVT00024601001; GSVIVT00025563001; GSVIVT00028796001; GSVIVT00034115001; HAP2A; HAP2C; LOC_Os03g07880; LOC_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0032582	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30500.2	NF-YA7 nuclear factor Y, subunit A7 chr1:10804736-10805896 REVERSE LENGTH=190	1.99965e-42	51%
RefSeq	Arabidopsis thaliana	NP_174338.2	nuclear transcription factor Y subunit A-7 [Arabidopsis thaliana]	1.00053e-42	50%
RefSeq	Populus trichocarpa	XP_002332527.1	predicted protein [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE55

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: LQNSGTESSPSDEQQKQSLHQQQVPPTGISPAHAEFMTRQTQLELGHTGTDTLWQARTAYPYPDPFYGNYVAAYGAQAMIPPHMLGVPQAGLPLPPSDAVEEPPVYVNAKQYYGILRRRQSRAKAESENKLVKSRRPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVASRDQDSHDSTGQDNKVVNPDAGKDVALQVSDRMQRTDGVAFIGNGISTPPPGTVAPGQVGVAVSVSNGAHYNYPQRRGFHPSAFHSLSSGKAESGQVGGMVSNGGHHTAVATQ*

Protein Length: 286

Fln nts: CATCCAAGCATATTCTATAAATATTGGGCTTTGGTTTTAGCTCCCTCTCCTCCCTTCCCAAATTTCTGAAACTTGCCATCTGTTCCTTCCGGAGATCGGCAGATAGACACAGGAAGCACCAACCATGACTTGAGTTCCCAGGAGACTGCGAAGGGAGGAATGCAAAGCTGACGCGTAGCTCCGTGGAGTGTCTGAGTCCCAAAGAAACGCCCTTCCCCTGTTCGAATCCCTCTGAGAAGAAAACTAAGTCGTCAAACAGCGAGTAATTTATGATGCAGAAC_-_ATGACTACAAAACTCGGGCACTGAAAGCAGTCCATCAGATGAGCAACAGAAACAGTCACTGCACCAGCAGCAGGTTCCGCCAACAGGCATATCACCTGCACATGCAGAATTTATGACACGACAAACTCAACTTGAGCTAGGACACACTGGAACTGATACTTTGTGGCAAGCTCGAACTGCATATCCATATCCTGATCCCTTTTATGGAAACTATGTCGCAGCATATGGTGCACAAGCCATGATTCCTCCTCATATGCTGGGGGTGCCTCAAGCTGGTCTTCCATTACCACCATCAGATGCCGTTGAGGAACCTCCTGTCTATGTAAATGCGAAACAATATTATGGAATTTTGAGACGCCGACAATCACGAGCAAAAGCAGAGTCTGAGAACAAGCTGGTAAAGTCTAGAAGGCCATATCTTCATGAATCCCGGCACCTCCATGCTTTAAGACGAGCAAGGGGTTGTGGTGGTCGTTTTCTAAACACCAAAAAAGACGGAAATAATCAGGAAGTTGCGTCAAGAGATCAGGATTCTCATGATTCTACAGGCCAAGATAATAAGGTGGTCAATCCTGATGCAGGGAAGGATGTTGCATTACAAGTGTCTGACAGGATGCAACGTACTGATGGTGTAGCATTTATAGGCAATGGCATTAGCACTCCTCCTCCTGGAACTGTTGCTCCTGGTCAAGTAGGAGTGGCTGTAAGTGTGTCAAATGGCGCACATTACAATTATCCTCAGAGGCGAGGATTTCATCCATCTGCATTTCATTCTCTTTCATCTGGGAAAGCAGAAAGTGGCCAAGTGGGAGGCATGGTTTCAAATGGAGGCCACCATACAGCAGTAGCAACCCAATGAAGTCAGCTTCCTTGACAAGATATTCTTCAAGGAAGGAAAAGGGTTCAGCATACATCTGAGATTAGATCTCTTTTCCGATTCTGAAGCTGATCTTTTTACCTGGCCTTCTCTTGAACTTGGTATATTTGTGTCTGGACTCGAGACACTAGAGCAACTATGCTGTAGTTTTATGTGGTGCTGAGGCAGGGGAGAATTCCATCGACCTGCATTGAAATGGACAAAGGCAAATCATTCTTGGCTAATGAATGTGATACTATTTAAGCTCTAGTATTTAACCAACTTTTATTGACCGGTTTAAGTCTTCTTGAAAGTGGACAAAGGAAGATCGTTATTGGCTAATGAATGTAGTACTATGTCAGCTGTAGTATTTAGCCAACCTTTATTGACCGGTATAAGTTATGTTGAAATTGGACGAGTGCAAATCATTCTTGGCTAATGAATGTGGTACTATCTAAGCTATAGTGACTAATGGACTTTTATTGACCGGCATAAGTTATCTTGAAAATGGACAAATGCATATCACTCTTGGCTAGTGAAAGTGGTGTTATTTAAGCTTATAGTATATAACTAACTTGTATTGACCGGTTTTAATCGCTCAAATAGTCTTGATAACTCTTAATAACTATGAGCTAGTTGAGATGCCAAATTAATTCCCTTT

Fln Alignment:

Contig11145___GTESSPSDEQQKQSLHQQQVPPTGISPAHAEFMTRQTQLELGHTGTDTLWQARTAYPYPDPFYGNYVAAYGAQAMIPPHMLGVPQAGLPLPPSDAVEEPPVYVNAKQYYGILRRRQSRAKAESENKLVKSRRPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVASRDQDSHDSTGQDNKVVNPDAGKDVALQVSDRMQRTDGVAFIGNGISTPPPGTVAPGQVGVAVSVSNGAHYNYPQRRGFHPSAFHSLSSGKAESGQVGGMVSNGGHHTAVATQ
D5AE55_______________GTESSPSDEQQKQPPQQQQVLPTGISPAHAEFMTRQTQLELGHSGGDTLWQARTAYPYPDPFYGNYVAAYGAQAMIPPHMLGVHQAGLPLPPSDAVEEPPVYVNAKQYHGILRRRQSRAKAESENKLIKSRKPYLHESRHLHALRRARGCGGRFLNTKKDGNNQEVVSGDQDSHDSIGQDNKVVNSDSGKDGALQVSNRIQRTDDVAYIGNGIST-HSGTVAPGQVGVGISVSNGTHFNYPQRRGFHSSAFHSLSSGKAESGQVGGMVSNGGRHTAVATQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
485		25		75	0.996473
620	75		25		0.996473
1341	88		11		0.923564
1467			85	14	0.993533
1468	85		14		0.993533
1485	87		12		0.992554
1611	63		36		1.0
1618		11		88	0.923564
1666		71	28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain