SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11085

Length: 1616 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11085 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative histone H1 [Cryptomeria japonica]	-	-	5.0e-15	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Putative histone H1	-	-	3.215e-09	-

Source	Gene names
Sma3	H1-I; Md-H1; h1;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G06760.1	winged-helix DNA-binding transcription factor family protein chr1:2076687-2077616 REVERSE LENGTH=274	6.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_172161.1	histone H1.1 [Arabidopsis thaliana]	8.0e-14	60%
RefSeq	Populus trichocarpa	XP_002327673.1	histone H1 [Populus trichocarpa]	7.0e-15	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAB3

Fln msg: No stop codon before M and M found is too far from subject M, your sequence is longer than subject: 273 - 224

Fln protein: MIIDAISSLKERAGSSHYAISKFLQVKYEDKLPPNFKTLLNKQLKNMSEQGKLIKVKASFKLADELKNQLKAELRKASKKAASEEGAKPAEGETQKTKAKTNKEKKVKQQEPPKEVEKEEKVAKEKKERKPAKPKKEVNEEKITEKAKPNKGVKKASTEKDTSKKKTTSKKVEKDASKKVEKDASKKAEKEAEKKVKKNSNKESQQANKDSAEEKQKATKPEKRKASSKEEKPSKASKTSKEQSVKDAIGKTDKDKVKAEPKKKATKATKKT*

Protein Length: 274

Fln nts: GTGAAGAAGAAGGGGGAGAAGAAGATGAAAACGAAGACATAGATGAAGAGGCTGGTGATGAAAATAAGCCAAATGATGGAGAAATTGGTGGAAATGATGCACCGATTGATGGTGTAGAAGGTGTGATTGGCGATGATCAGGCGAAGAAGGGGAAGAAGGTCGATAAGAAAGAGCCGAAGGCGAAAAAGGATCCTAAAGAGCCGAAAGAACCGAAGGCGAAAAAGGATCCCAAAGAGCCTAAAGAACCGAAGGCGAAAAAGGATCCTAAAGAGCCTAACGAACCGAAGGCGAAAAAAGATCTTAAAGAGCCGAAGGAGAAAAAAGAGGCCAAGGAACCCAAAGCTCCACCGGCGCATCCCAAATATGTAGAGATGATCATAGATGCCATATCTTCATTGAAAGAAAGGGCAGGATCAAGTCATTATGCAATCTCTAAATTCTTGCAAGTTAAGTATGAGGATAAGTTGCCACCCAACTTTAAAACGTTGCTCAACAAGCAATTGAAAAATATGAGTGAGCAGGGCAAATTGATTAAGGTGAAGGCTTCGTTTAAGCTGGCGGATGAATTGAAGAACCAATTGAAAGCAGAACTTAGAAAGGCTAGTAAGAAAGCTGCTTCTGAAGAGGGTGCTAAGCCAGCTGAAGGTGAGACCCAAAAAACTAAAGCCAAAACGAACAAAGAGAAAAAAGTCAAGCAGCAGGAACCTCCCAAAGAGGTGGAGAAAGAAGAAAAGGTTGCAAAGGAAAAGAAGGAACGAAAACCAGCCAAGCCCAAAAAAGAAGTCAACGAAGAAAAGATAACTGAAAAAGCCAAACCTAACAAAGGTGTGAAGAAAGCAAGCACAGAAAAGGACACATCGAAGAAGAAGACCACCTCAAAGAAGGTAGAGAAGGATGCATCAAAGAAGGTAGAGAAGGATGCCTCAAAGAAGGCTGAAAAGGAAGCTGAGAAGAAGGTTAAAAAGAATTCAAACAAAGAATCCCAACAGGCAAACAAGGACTCTGCAGAAGAGAAACAAAAGGCTACTAAACCAGAGAAGAGAAAAGCTTCCAGCAAAGAAGAGAAGCCTTCAAAAGCGTCAAAAACTTCCAAAGAGCAATCTGTGAAAGATGCAATAGGCAAAACAGACAAGGATAAAGTGAAAGCAGAACCAAAAAAGAAGGCAACAAAAGCAACTAAAAAGACCTGA___CAGATATAGCAGATTACCTTCTTGTTAATTGATTTGCATTTTCTTAATTAACAACTGGATGAAATCGTGAGACTTTCAAAGGCAAAGCAGGATTGGTCAACTGGTTATTACCTTAAATCACTGTTTTACAATTTTGCCAATTTTGGATGCTTTTCAATGATTAGTGATCCTGGTTTTGATATTTTGGAGTATTTATGCAATCCATTAAACCTGTGTTTTGATATACCTCTTTTATTGTGATAATGGATATTTTAAAGCTTATTCCCATCATGGAAGCCCCTGTTCTTGAAGTCGATATATTTTGATGTTTATAATTGTACATTTTAATGTTTCGGATTGTGTTTGAATACCCCATGGACAAGGGGAACTCGCTGTCTTCTGTGCTTATTTGCATATAATGGTATTCAATAATAAGAAAAAAAAACT

Fln Alignment:

Contig11085___YVEMIIDAISSLKERAGSSHYAISKFLQVKYEDKLPPNFKTLLNKQLKNMSEQGKLIKVKASFKLADELK
D5AAB3_______________YLQMITEAITSLKERTGSSQYAIAAYIGSKYQSKLPANFKKLLTVQLRNLAKSGKLTKVKSSFKLSEQLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain