SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11071

Length: 2962 nt

UniGene Fasta

>sp_v3.0_unigene11071
ATTGGGGATGAGCGATGGGCATATCGCAAAATAGAGATAAGATCACCAAGGAAGCAACAAAATCAGAGGCCGAGGACCTCGACCATGGGTTCTCTGTGTATATAGCTTTGAAGTCCATATGAATATATTCATTCAGTATATTGTCTCTCTGTGTTGAATGCTGTGACCATGAAGCGGACGAACTATGGATGCATATCGGACGAGGCCCTGGAGTGCGTTATGGGCCAGCTGGAGGATCCGAGAGACCGTGGCTCGGTCTCTCTGGTCTGCAAGAAATGGTACGACGTGGATGCCTTCACGAGGAAACATGTGACCGTGGCCTTCTGCTACTCAATACACGCCAGCGACCTTACCCGCAGGTTCACCAGGCTGGAGTCCCTTACGGTCAAAGGGAAACCCAGGGCGGCCATGTATAATTTGCTCCCTCACGATTGGGGGGGTTATGCCAAACCCTGGATAAACCAGATCTCCTTCACCTGTCTCTGCCTCAAGGCGCTCCATCTGCGCAGAATGATTGTTACCGATGATGATCTCACCACTCTCGTCAGGGGCCGCGGTCACATGTTGCAGGAGCTCAAACTCGAGAAGTGCTCTGGGTTCTCTACAAGGGGGCTTGAGGAAGTGGCTCGCGGTTGCAGGTCTCTTAAGACCTTAATGCTGGACGACAGTCAAATTGAAGAGGAAAGCGGGGACTGGCTACATGAGCTTGCTCTTAACAATTCTTCTTTGGAAGTGTTGAACTTCTACATGACAACATTAGAAAGGATCAATACCAGTGATCTTGAGCTAATAGTAACAAACTGCCCCTCATTAACATCCTTGAAGGTTGGAGAATGTGATATAGTTGAGATGAGAGGCGTTCTGAGTAAGGCTACTGCATTGGAGGAGTTTGGTGGTGGGACATTTAACAACAGTGAAGAGCATGCGACAGAGACCAGTATGATTACATTTCCTCCAAAGTTGACATCATTGCTAGGACTAAACTTCATGATTGAGGCTGAGATGCCTGCTATATTCCCAAGAGCTTCAGCCCTTAAGAGATTGGATCTGCAGTACACATTCTTGAGCACAGAAAATCACTGTCAGTTGGCAGGGCTCTGTCCTAATCTTGAAATTCTCGAGGTTAGAAATGTTATCGGAGACAAAGGGTTAGAAGTTGTTGCTAATACTTGCAAAAAGCTGAAAAGACTTAGAGTGGAACGAGGAGCAGATGACCCAACTTTGGAGGACGAACAAGGTTGGATTTCCCACAAAGGGCTTTCCTTGGTAGCTCAAGGCTGCCCCCTTCTTGAGTACATTGCCGTCTATGTTTCAGATATATGCAACTCAACCTTGGAGACTTTTGGTCAATGTTGCAAAAATCTGAAGGATTTCCGGTTGGTCTTGTTAGATAAAGAAGAGAACATCACTGATTTACCGCTGGACAATGGAGTCAGGGCTTTGCTACGTGGATGTCAAAAATTGAGTAGGTTTGCATTTTATGTCAGGCCTGGAGGGTTGACAGATACAGGTCTTGGTTATATTGGCGAGTACAGCACTAATGTCAGGTGGATGCTTCTAGGTTTTGTTGGTGAAACTGACCAAGGCATTCTCGAGTTTTCCAAGGGCTGCCCAAAGCTGGAAAGGCTAGAAATTAGAGGTTGTTGTTTTAGTGAATCTGCATTGGCAGCTGCAGTGCTTCAGCTGAAATCACTGAAGTACATATGGGTTCAAGGATATAATGCAACTGTTACTGGTGCTAACCTTCTAGCGATGGCTCGACCTTATTGGAACATAGAGTTTTCTCCTGCTTTGCAATCGAGTGATGTGTATGCTGAAGATGTGGCAGAAGAAAAAAAACAGGATCAGGTAGCACAACTTTTGGCCTACTATTCTCTTGCTGGAAGGAGGACAGATCACCCAGAGTCCATAATTCCCTTAGCCCCACCTTTCCGGAATTACCATCAAGTAGCTGTCTTCTAATGTGAATATCTATATAAAATATGAGTCCCAAACTTGCATGGAGGTATATAAATATAGAGCATGCAAAGGTGCTGCTTTCTCTCCCGTTTCCTTCATATTTCTTTTGTGATAGTAGTGTGACTAGCACGTACTATGCCTAACAGTCTGGTGGAAGAAAGGTACGTTGAGGCTCATCTCTCTTCCTAATTCTCTATGGCAGTGGATGTAGTCATTCTACCTCATAACGTGTCTGTTTATTGATGGAAACTTCTTCCCAGTGTGATGAACTCTTCTGGAGAGTTCTAGGGGATATCTTGGTAGGTTCAATGGGATGTCTTCTGAAAATCATAATCTTCATATTTCTATCAATGAAGACATTGCTGAAAGAAGTGGTTACCACAAAAATCCATGTAAGTACAAGGGGTATTGCACTGAAAAAAAAAGTTCGTCCTTGGAAAACTGAAATGTTCATTTTTTCTTCTAAGCTGGTTCCGGATATTTATGGAGTTGAGATGTACGTAATCGCGAAGGTGTACAGTCAAAACGGGTATGTTTCATACTCTGACTTGGTGGGCTACAAGTCAAAACTTATAGTGGACATACCGTGTTTCTTTTCCTAGTATGCTGGTAACAACAGTGCTGAAGTCAACAGGCCTCTGGTTTTCAACGACATTAAGTTGTGGGTATGCTTAAGGACATTGAAATACCAAGGGCACTAGAGTTCAAGTAGACGTTTATAGTTTAACCGGCCATTCAACATCCTGAGTTTTTAGCATGAGAAGCCACTTGTCTTATTTTCAGTTCTTGGTAGGGAGTTCAGAATTAGGGGGTGATTTGAGAACATCATAACATAATGTCATATTTTATATCCAGAGACTTGAACTGTTTGTATGTTGTAATTCATATTTGTTGACATGATTGATATGTACATATGTTACATGGTATTAGCATGAGGATGTTGATGTTTGATCTTATTTAAGTGTTCGTAGGTCGTAATTCATATTTGTGGACATGATTGATA

Ace file of the UniGene sp_v3.0_unigene11071

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coronatine-insensitive 1 [Solanum lycopersicum] gb\|AAR82926.1\| coronatine-insensitive 1 [Solanum lycopersicum]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39940.1	COI1 RNI-like superfamily protein chr2:16672848-16675486 REVERSE LENGTH=592	55%
RefSeq	Arabidopsis thaliana	NP_565919.1	Coronatine-insensitive protein 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002312140.1	f-box family protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ74

Fln msg:

Fln protein: MKRTNYGCISDEALECVMGQLEDPRDRGSVSLVCKKWYDVDAFTRKHVTVAFCYSIHASDLTRRFTRLESLTVKGKPRAAMYNLLPHDWGGYAKPWINQISFTCLCLKALHLRRMIVTDDDLTTLVRGRGHMLQELKLEKCSGFSTRGLEEVARGCRSLKTLMLDDSQIEEESGDWLHELALNNSSLEVLNFYMTTLERINTSDLELIVTNCPSLTSLKVGECDIVEMRGVLSKATALEEFGGGTFNNSEEHATETSMITFPPKLTSLLGLNFMIEAEMPAIFPRASALKRLDLQYTFLSTENHCQLAGLCPNLEILEVRNVIGDKGLEVVANTCKKLKRLRVERGADDPTLEDEQGWISHKGLSLVAQGCPLLEYIAVYVSDICNSTLETFGQCCKNLKDFRLVLLDKEENITDLPLDNGVRALLRGCQKLSRFAFYVRPGGLTDTGLGYIGEYSTNVRWMLLGFVGETDQGILEFSKGCPKLERLEIRGCCFSESALAAAVLQLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPALQSSDVYAEDVAEEKKQDQVAQLLAYYSLAGRRTDHPESIIPLAPPFRNYHQVAVF*

Protein Length: 599

Fln nts: ATTGGGGATGAGCGATGGGCATATCGCAAAATAGAGATAAGATCACCAAGGAAGCAACAAAATCAGAGGCCGAGGACCTCGACCATGGGTTCTCTGTGTATATAGCTTTGAAGTCCATATGAATATATTCATTCAGTATATTGTCTCTCTGTGTTGAATGCTGTGACC_-_ATGAAGCGGACGAACTATGGATGCATATCGGACGAGGCCCTGGAGTGCGTTATGGGCCAGCTGGAGGATCCGAGAGACCGTGGCTCGGTCTCTCTGGTCTGCAAGAAATGGTACGACGTGGATGCCTTCACGAGGAAACATGTGACCGTGGCCTTCTGCTACTCAATACACGCCAGCGACCTTACCCGCAGGTTCACCAGGCTGGAGTCCCTTACGGTCAAAGGGAAACCCAGGGCGGCCATGTATAATTTGCTCCCTCACGATTGGGGGGGTTATGCCAAACCCTGGATAAACCAGATCTCCTTCACCTGTCTCTGCCTCAAGGCGCTCCATCTGCGCAGAATGATTGTTACCGATGATGATCTCACCACTCTCGTCAGGGGCCGCGGTCACATGTTGCAGGAGCTCAAACTCGAGAAGTGCTCTGGGTTCTCTACAAGGGGGCTTGAGGAAGTGGCTCGCGGTTGCAGGTCTCTTAAGACCTTAATGCTGGACGACAGTCAAATTGAAGAGGAAAGCGGGGACTGGCTACATGAGCTTGCTCTTAACAATTCTTCTTTGGAAGTGTTGAACTTCTACATGACAACATTAGAAAGGATCAATACCAGTGATCTTGAGCTAATAGTAACAAACTGCCCCTCATTAACATCCTTGAAGGTTGGAGAATGTGATATAGTTGAGATGAGAGGCGTTCTGAGTAAGGCTACTGCATTGGAGGAGTTTGGTGGTGGGACATTTAACAACAGTGAAGAGCATGCGACAGAGACCAGTATGATTACATTTCCTCCAAAGTTGACATCATTGCTAGGACTAAACTTCATGATTGAGGCTGAGATGCCTGCTATATTCCCAAGAGCTTCAGCCCTTAAGAGATTGGATCTGCAGTACACATTCTTGAGCACAGAAAATCACTGTCAGTTGGCAGGGCTCTGTCCTAATCTTGAAATTCTCGAGGTTAGAAATGTTATCGGAGACAAAGGGTTAGAAGTTGTTGCTAATACTTGCAAAAAGCTGAAAAGACTTAGAGTGGAACGAGGAGCAGATGACCCAACTTTGGAGGACGAACAAGGTTGGATTTCCCACAAAGGGCTTTCCTTGGTAGCTCAAGGCTGCCCCCTTCTTGAGTACATTGCCGTCTATGTTTCAGATATATGCAACTCAACCTTGGAGACTTTTGGTCAATGTTGCAAAAATCTGAAGGATTTCCGGTTGGTCTTGTTAGATAAAGAAGAGAACATCACTGATTTACCGCTGGACAATGGAGTCAGGGCTTTGCTACGTGGATGTCAAAAATTGAGTAGGTTTGCATTTTATGTCAGGCCTGGAGGGTTGACAGATACAGGTCTTGGTTATATTGGCGAGTACAGCACTAATGTCAGGTGGATGCTTCTAGGTTTTGTTGGTGAAACTGACCAAGGCATTCTCGAGTTTTCCAAGGGCTGCCCAAAGCTGGAAAGGCTAGAAATTAGAGGTTGTTGTTTTAGTGAATCTGCATTGGCAGCTGCAGTGCTTCAGCTGAAATCACTGAAGTACATATGGGTTCAAGGATATAATGCAACTGTTACTGGTGCTAACCTTCTAGCGATGGCTCGACCTTATTGGAACATAGAGTTTTCTCCTGCTTTGCAATCGAGTGATGTGTATGCTGAAGATGTGGCAGAAGAAAAAAAACAGGATCAGGTAGCACAACTTTTGGCCTACTATTCTCTTGCTGGAAGGAGGACAGATCACCCAGAGTCCATAATTCCCTTAGCCCCACCTTTCCGGAATTACCATCAAGTAGCTGTCTTCTAA___TGTGAATATCTATATAAAATATGAGTCCCAAACTTGCATGGAGGTATATAAATATAGAGCATGCAAAGGTGCTGCTTTCTCTCCCGTTTCCTTCATATTTCTTTTGTGATAGTAGTGTGACTAGCACGTACTATGCCTAACAGTCTGGTGGAAGAAAGGTACGTTGAGGCTCATCTCTCTTCCTAATTCTCTATGGCAGTGGATGTAGTCATTCTACCTCATAACGTGTCTGTTTATTGATGGAAACTTCTTCCCAGTGTGATGAACTCTTCTGGAGAGTTCTAGGGGATATCTTGGTAGGTTCAATGGGATGTCTTCTGAAAATCATAATCTTCATATTTCTATCAATGAAGACATTGCTGAAAGAAGTGGTTACCACAAAAATCCATGTAAGTACAAGGGGTATTGCACTGAAAAAAAAAGTTCGTCCTTGGAAAACTGAAATGTTCATTTTTTCTTCTAAGCTGGTTCCGGATATTTATGGAGTTGAGATGTACGTAATCGCGAAGGTGTACAGTCAAAACGGGTATGTTTCATACTCTGACTTGGTGGGCTACAAGTCAAAACTTATAGTGGACATACCGTGTTTCTTTTCCTAGTATGCTGGTAACAACAGTGCTGAAGTCAACAGGCCTCTGGTTTTCAACGACATTAAGTTGTGGGTATGCTTAAGGACATTGAAATACCAAGGGCACTAGAGTTCAAGTAGACGTTTATAGTTTAACCGGCCATTCAACATCCTGAGTTTTTAGCATGAGAAGCCACTTGTCTTATTTTCAGTTCTTGGTAGGGAGTTCAGAATTAGGGGGTGATTTGAGAACATCATAACATAATGTCATATTTTATATCCAGAGACTTGAACTGTTTGTATGTTGTAATTCATATTTGTTGACATGATTGATATGTACATATGTTACATGGTATTAGCATGAGGATGTTGATGTTTGATCTTATTTAAGTGTTCGTAGGTCGTAATTCATATTTGTGGACATGATTGATA

Fln Alignment:

Contig11071___VTMKRTNYGCISDEALECVMGQLEDPRDRGSVSLVCKKWYDVDAFTRKHVTVAFCYSIHASDLTRRFTRLESLTVKGKPRAAMYNLLPHDWGGYAKPWINQISFTCLCLKALHLRRMIVTDDDLTTLVRGRGHMLQELKLEKCSGFSTRGLEEVARGCRSLKTLMLDDSQIEEESGDWLHELALNNSSLEVLNFYMTTLERINTSDLELIVTNCPSLTSLKVGECDIVEMRGVLSKATALEEFGGGTFNNSEEHATETSM---ITFPPKLTSLLGLNFMIEAEMPAIFPRASALKRLDLQYTFLSTENHCQLAGLCPNLEILEVRNVIGDKGLEVVANTCKKLKRLRVERGADDPTLEDEQGWISHKGLSLVAQGCPLLEYIAVYVSDICNSTLETFGQCCKNLKDFRLVLLDKEENITDLPLDNGVRALLRGCQKLSRFAFYVRPGGLTDTGLGYIGEYSTNVRWMLLGFVGETDQGILEFSKGCPKLERLEIRGCCFSESALAAAVLQLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPALQSS-DVYAEDVAEEKKQDQVAQLLAYYSLAGRRTDHPESIIPLAPPFRNYHQVAVF
B8LQ74_______________MAMKRAGYGCISEEALECVMGQLEDPRDRGSVSLVCKKWYDVDAFTRKHVTVAFCYSIHARDLTRRFTRLESLTVKGKPRAAMYNLLPDDWGGYAKPWIDQISHTCLCLKTLHLRRMIVTDDDLATLVRGRGHMLQELKLEKCSGFSTRGLEEVAHGCRSLKTLMLDESQIEEESGDWLHELALNNSSLEVLNFYMTTVEMINTSDLELIVTNCPSLTSLKVGDCDILDMRGVLSKGTALEEFGGGTFNTSEEHPTGTNMSQMIKFPPKLTSLLGLNFMMEADMPAIFPRASALTRLDLQYTFLSTENHCQLAGLCPNLEILEVRNVIGDKGLEVVANTCKKLKRLRVERGADDPTLEDEQGWVSHKGLSSVAQGCPLLEYIAVYVSDICNSTLETFGQCCKNLKDFRLVLLDKEEHITDLPLDNGVMALLRGCQKLSRFAFYVRPGGLTDTGLAYIGEYSTNVRWMLLGFAGETDQGILEFSKGCPKLERLEIRGCSFSESALAAAVLRLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPGLQSTKDVLVEDMAAEKMQDRVAQLLAYYSLAGNRTDHPESVIPLASPFRNYQQVAVF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
2382	90			10	0.90298
2383	90		10		0.90298
2384	90		10		0.90298
2404	88		11		0.923564
2405	88		11		0.923564
2406	88		11		0.923564
2451			83	16	0.999991
2913	9	4		81	0.999363
2916	10		10	70	0.922578
2917	11			77	0.968132
2918	22			77	0.999999
2922	12			87	0.992554
2923	12		87		0.992554
2924	12			87	0.992554
2925		12		87	0.992554
2926	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain