SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11060

Length: 1492 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11060

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Basic 7S globulin 2 small subunit, putative n=1 Tax=Ricinus communis RepID=B9RTU6_RICCO	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Basic 7S globulin 2 small subunit, putative	-	-	1.272e-08	-

Source	Gene names
Sma3	GSVIVT00023703001; OSJNBb0006J12.8; POPTRDRAFT_416930; RCOM_0912820; RCOM_0912830; VITISV_011733; VITISV_038701;

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN22

Fln msg:

Fln protein: MPSLILRLVLIAAVIVGLCQLPANASRKRPTALVTPISYDPRSTNYSVEIGQRTPLRVLQLLLDIEQDYMWVRCYNNTYKSSTYRPVDCSTKLCKSYEYSACYTCFGTRAPGCNNHSCSVPEPGVQLGQDVAEILSSDGRKSGLPVRFPRLPFACAEDKDPSDLLPGVDGVAGMSSSTLALPAQLSAAGDFSRKFAMCLPQENSEGYLFFGDGPNVFSPLKGGAPADLSRNLIRTPLIRNPIYSSDSTHASTHGFYIGVQGIKVNGADVPIDAERLRINTRGRGGTKLSTVARYTQLATPIYNSLVALYTQMAAQMNIKRVTLVDPFPPLGQDVCFDATGTGQPPFVGSTAPGPNVPTIDLVLEGNATWRILGANSMERLYTENALCLAFVDAGEDPVASIVMGTYQMQENFIQFDLVTSTLGLSSNLFSLPQPTSCGNFNLTTSL*

Protein Length: 448

Fln nts: TGTCTTGACCTTGGCTGTCACTCAATGAGCAACTTTACTGACCACTTGATCCTTCATCAACTCA_-_ATGCCTTCACTCATTCTTCGTCTCGTCCTTATTGCCGCAGTCATCGTTGGCCTCTGTCAATTGCCCGCAAATGCGTCCCGGAAGCGCCCGACGGCCCTCGTCACGCCGATCAGCTACGATCCGCGGTCGACGAATTACAGCGTGGAGATTGGACAGAGAACCCCTCTGCGGGTCCTGCAGCTATTGCTAGATATTGAGCAAGACTACATGTGGGTAAGGTGCTATAACAATACCTACAAATCCTCCACTTACCGCCCGGTCGACTGCAGCACGAAGCTGTGTAAGTCCTATGAGTATTCGGCCTGCTACACCTGCTTTGGCACCCGCGCCCCCGGCTGCAATAACCATAGCTGTTCCGTGCCTGAGCCCGGCGTTCAACTCGGCCAGGATGTGGCTGAGATTCTCAGCAGTGATGGTAGAAAATCCGGCCTTCCCGTCAGGTTCCCTCGCCTGCCCTTTGCTTGCGCAGAAGACAAAGATCCCTCCGATTTGCTTCCGGGGGTGGATGGCGTCGCCGGGATGAGCTCGTCCACGCTGGCACTGCCAGCTCAGCTCTCCGCTGCAGGGGACTTTAGTCGCAAGTTTGCCATGTGTCTGCCACAGGAGAATTCAGAGGGGTATCTCTTCTTTGGTGACGGGCCGAACGTCTTCTCTCCACTGAAAGGCGGAGCCCCAGCAGACCTCTCGCGCAACCTCATCCGTACTCCCTTGATCAGGAACCCCATCTATAGCTCTGACTCTACCCACGCCTCCACACATGGCTTCTATATCGGTGTTCAGGGAATCAAAGTCAATGGCGCCGACGTGCCGATCGACGCAGAGAGGCTGCGAATCAACACCAGGGGACGCGGCGGCACGAAGCTGAGCACCGTGGCGCGCTATACACAACTGGCCACCCCGATCTACAACTCCCTCGTGGCCCTCTACACCCAGATGGCGGCGCAAATGAACATCAAGCGCGTTACCTTGGTGGATCCCTTTCCCCCGTTGGGTCAAGACGTCTGTTTCGACGCAACTGGTACAGGGCAGCCCCCTTTCGTGGGAAGCACAGCTCCTGGACCCAACGTACCGACGATCGACCTCGTTTTGGAGGGCAACGCTACTTGGAGGATCCTTGGAGCTAACTCCATGGAGCGGCTCTACACGGAGAATGCGCTGTGTCTAGCTTTTGTTGATGCAGGTGAGGATCCTGTGGCATCGATTGTGATGGGGACTTATCAGATGCAAGAGAATTTCATCCAATTCGACCTGGTCACCTCAACATTAGGTCTATCTTCCAATCTATTCTCATTACCTCAGCCAACAAGTTGTGGCAATTTCAACCTGACTACTTCTCTGTGA___CGAATCCTTTCAAGATAATAAGTTCTTCCAACAGAACATAAGCACAGTAAATAATGAGATATTATTTATGAAAGCCAGGTCCATTTC

Fln Alignment:

Contig11060___CQLPANASRKRPTALVTPISYDPRSTNYSVEIGQRTPLRVLQLLLDIEQDYMWVRCYNNTYKSSTYRPVDCSTKLCKSYEYSACYTCFGTRAPGCNNHSCSVPEPG---VQLGQDVAEILSSDGRKSGLPVRFPRLPFACAEDKDPSDLLPGVDGVAGMSSSTLALPAQLSAAGDFSRKFAMCLPQENSEGYLFFGDGPNVFSPLKGGAPADLSRNLIRTPLIRNPIYSSDSTHASTHGFYIGVQGIKVNGADVPIDAERLRINTRGRGGTKLSTVARYTQLATPIYNSLVALYTQMAAQMNIKRVTLVDPFPPLGQDVCFDATGTGQPPFVGSTAPGPNVPTIDLVLEGNA--TWRILGANSMERLYTENALCLAFVDAGEDPVASIVMGTYQMQENFIQFDLVTSTLGLSSNLFSLPQPTSCGNFNLTTS
B8LN22_______________CHLPANASQRRPRALVTQITQDPASQRYTVEIRQRTPLRIQRLVLDIEEDYMWVRCDNKSYISSTYSPLGCSAQLCKSYQYSGCGTCYGSRGPGCNNNTCVVAVQGSRSVELAQDVLVLPSSDGSNPGPLARFPQLAFAC--DLSSNRVISGTVGVAGMTSSTLALPSQLSAAEGFSRKFAMCLPSGNAPGALFFGDEPLVFLPPPG---RDLSSQIIRTPLIKNSVY--------TDVFYLGVQRIEVGGVNVAIDAEKLRFDKDGRGGTKLSTVVRYTQLASPIYNSLEGVFTSVAKKMNITRVASVSPF-----GACFDSSG------VGSTRVGPAVPTIDIVLQGNSTTTWRIFGANSMVRV-NNKVLCLGFVDGGDNLQQSIVIGTYQMQDNLLQFDLATSTLGFSSSL--LFGQTTCSNFNFTAT

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
45	33		33		0.997753
46	50	25		25	1.0
47		75		25	0.996473
49			50	50	1.0
62	57		42		1.0
65	57		14		1.0
66	85			14	0.993533
67		85	14		0.993533
68	14		14	71	0.984337
70	85	14			0.993533
71	85			14	0.993533
73		14	85		0.993533
74	14	71	14		0.984337
75	14	85			0.993533
76		14		85	0.993533
77			14	85	0.993533
80	14	85			0.993533
82		14	14		0.984337
83	14	85			0.993533
84	85	14			0.993533
88		14		85	0.993533
90		85		14	0.993533
91			85	14	0.993533
95		85		14	0.993533
101		28		71	1.0
393	66	33			0.997452
1105	25	75			0.996473
1150	90			10	0.90298
1152		90	10		0.90298
1155	10		90		0.90298
1158		10		90	0.90298
1161			90	10	0.90298
1162	80	20			0.999996
1164		10	90		0.90298
1165			80	20	0.999996
1227		70		30	1.0
1341		50		50	1.0
1386	25	75			0.996473
1387	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain