SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11033

Length: 1428 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11033

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoacid-dependent dioxygenase n=2 Tax=Selaginella moellendorffii RepID=D8R3W5_SELML	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	1-aminocyclopropane-1-carboxylate oxidase, putative	-	-	5.101e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Leucocyanidin oxygenase.	EC:1.14.11.19	-	6.908e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		6.908e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061		6.908e-06	%
Sma3	Metabolic pathways	01100		6.908e-06	%
Sma3	Biosynthesis of secondary metabolites	01110		6.908e-06	%
Sma3	Flavonol synthase.	EC:1.14.11.23	-	7.209e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		7.209e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061		7.209e-08	%
Sma3	Metabolic pathways	01100		7.209e-08	%
Sma3	Biosynthesis of secondary metabolites	01110		7.209e-08	%
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	1.845e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.845e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.845e-08	%
Sma3	Metabolic pathways	01100	1.845e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.845e-08	%

Source	Gene names
Sma3	AT4g10490; AT4g10500; At4g10490; At4g10500; At4g16330; At5g24530; B1331F11.1; F3H7.16; F3H7.17; F7L13.70; F7L13.80; GSVIVT00000476001; GSVIVT00000477001; GSVIVT00000578001; GSVIVT00006404001; GSVIVT00015164001; GSVIVT00018086001; GSVIVT00026183001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr4:6491089-6492342 FORWARD LENGTH=349	47%
RefSeq	Arabidopsis thaliana	NP_192788.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002300519.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ73

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 310 - 368

Fln protein: TQKGVKIPLIDLSELEGASRTATVEAIGRACRDWGFFLVKNHGVSESTMENEMRVGREFFHLPTEEKMRYFSTDPKSRMRYSTSFNVKEDKTLNWRDFIRYSCKPLEEMLPLWPDKPTDFRKANAEYSKQIGDLARILLSAISESLGLPSEYINDVYGDYSQYMAYNFYPACPNPQQTLGLPGHSDPGGLTLLMQGDVGGLQVLHEDNWVVVRPVPNTLVINLGDQLQILSNDIYKSVEHRAVVNSNKERISVATAYGPSWSTAIAPAPQLVNSSRPAVYKGCVYGDFMDALESGSLHKKSVLDCLRIG*

Protein Length: 311

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCGTTGCTCCATTCGCGTCGCAAGTACTCTGCAACCCTCTCGGGCATACTCCCTCACCTCGCAAGGCCTCTGCAACCCTGCAACCCTCGATTAGCTCTTGCCCTGAGGAACCCATCTGTTGGATTTCGCTCGGAGACTTTTCGAGATGTCGCGGGATCGAAGTCTGTAAAGGTGAGAAGCTTTGCCATATAAGATTTCAATGTTGAACACAAAAAGGAGTGAAAATCCCCCTGATAGACCTCTCAGAACTCGAAGGCGCGAGCCGAACTGCGACGGTGGAAGCAATTGGCCGGGCATGTCGAGACTGGGGCTTCTTCTTGGTGAAGAATCATGGGGTTTCAGAATCCACCATGGAAAACGAGATGCGAGTGGGGCGAGAGTTTTTCCACCTGCCCACGGAGGAGAAGATGCGCTACTTCTCGACGGACCCCAAATCTCGCATGCGCTACTCCACCAGCTTCAATGTTAAAGAAGACAAAACCCTCAACTGGAGAGACTTTATCCGCTACTCTTGCAAACCCCTGGAAGAGATGTTGCCCCTTTGGCCTGACAAGCCCACAGATTTCAGAAAGGCAAATGCAGAGTACAGTAAGCAAATTGGAGATCTTGCGAGGATTCTATTAAGCGCTATCTCGGAGAGCTTAGGGCTTCCTTCGGAATACATAAACGATGTATATGGCGACTATTCGCAGTACATGGCCTACAACTTCTATCCGGCCTGTCCAAATCCACAGCAGACTCTGGGTTTACCAGGTCACTCGGACCCCGGCGGCCTCACCCTCTTAATGCAGGGTGATGTGGGTGGTCTGCAAGTGTTGCACGAGGACAATTGGGTAGTCGTTAGGCCTGTACCCAATACGCTTGTCATCAATCTGGGAGACCAGTTGCAGATTCTGAGCAACGACATTTATAAGAGCGTGGAGCACAGAGCCGTAGTCAATAGCAACAAGGAACGAATCTCAGTGGCAACGGCGTATGGTCCGTCGTGGAGCACAGCGATTGCTCCTGCCCCACAGCTTGTGAACTCGTCTAGGCCTGCTGTTTACAAGGGTTGTGTATACGGGGACTTCATGGATGCCCTCGAGAGTGGATCTCTTCACAAGAAAAGCGTTCTTGACTGTCTCAGAATCGGATGA___ACTGACTCAGTAATGCAACCATAAGCAGATAGATCCCTGCAGAGTTTCCACACTAATCAGAGTTTTAACTGTTCTGTTTCCAGCCCTGAAGAACTGATTCGAAATGCTTTGACTGGGCTTTTTAATAACAGCAAAATATTCTATGTTCCTAATTATATATAGAAACTTTAAAGTTAGAATCACAATTGAAGTTTTGCACAAAAAAATTTACACTGGTTTTAGACACCTGAGAGTGTTTTTTAAGTGATTAAGCACAAGGGATTA

Fln Alignment:

Contig11033___KIPLIDLSELEGASRTATVEAIGRACRDWGFFLVKNHGVSESTMENEMRVGREFFHLPTEEKMRYFSTDPKSRMRYSTSFNVKEDKTLNWRDFIRYSCKPLEEMLPLWPDKPTDFRKANAEYSKQIGDLARILLSAISESLGLPSEYINDVYGDYSQYMAYNFYPACPNPQQTLGLPGHSDPGGLTLLMQGDVGGLQVLHEDNWVVVRPVPNTLVINLGDQLQILSNDIYKSVEHRAVVNSNKERISVATAYGPSWSTAIAPAPQLVNSSRPAVYKGCVYGDFMDALESGSLHKKSVLDCLRI
A9NQ73_______________QIPLIDLSELEGAGRSATVEAIGRACRDWGFFLVKNHGVSESTMENEMRVGREFFHLPTEEKMRYFSTDHKSRMRYATSFNVKEDKTLNWRDFLRYSCKPLEEMVPLWPDKPTDFRKENAEYIRKIGDLASILLSAISESLGLPSEYINEVYGDYSQYMAYNFYPACPNPEQTLGLPGHSDPGGLTLLMQDDVGGLQVLHEDHWVVVRPVPNTLVINLGDQLQILSNDIYKSVEHRAVVNSNRERISVATAYGPSMSTLIAPAPQLVNSSSPAVYKGCVYGDFLDSLESGSLHKKSVLDCLKL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
281		33		66	0.997452
305		66		33	0.997452
318		33		66	1.0
319	33		66		0.997452
322	33	66			0.997452
324	33		66		0.997452
334	33		66		0.997452
335	66		33		0.997452
336	33	66			0.997452
360		33		66	1.0
375	66		33		0.997452
444		66		33	0.997452
498		33		66	0.997452
592	33		66		1.0
652		40		60	1.0
747	83		16		0.994512
750		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain