SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11024

Length: 1851 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11024

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histidinol dehydrogenase n=1 Tax=Picea sitchensis RepID=A9NV24_PICSI	-	-	0.0	91%
FL-Next	sp=Histidinol dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	ECs	Term	Type	e value	Identity
Sma3	Histidinol dehydrogenase.	EC:1.1.1.23	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Histidine metabolism	00340	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	histidinol dehydrogenase activity	GO:0004399	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histidine biosynthetic process	GO:0000105	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidinol dehydrogenase, conserved site	IPR001692	-	0.0	-
Sma3	Histidinol dehydrogenase	IPR012131	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63890.2	ATHDH, HISN8, HDH histidinol dehydrogenase chr5:25565600-25568104 REVERSE LENGTH=466	76%
RefSeq	Arabidopsis thaliana	NP_851260.1	Histidinol dehydrogenase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002300563.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV24

Fln msg: Separated hits, possible frame ERROR between 245 and 250,

Fln protein: MSLEGSLAGCRIPCRSISPFKHPSLICRVNRLNLRSPxxxSITGTRSELLAATRMKTYRLADLHSTEIHNLKSRPRLDFSSMFGVVGPIIEDVRKRGDAAVIDYTTKFDGVNLDKVVECVADLPDPKLDPAVQAAFDVAYDNIRAFHAAQRNPEQVIENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLAVPAQLAGCKIIILASPPRPDGSICKEVLYCAKKAGVTHILKAGGAQAVSAMAWGTTSCPKVEKILGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHANPVYIAADLLSQAEHGPDSQVVLVLVGEGVNLDEIEMELEKQCKSLPRGQFALKALSHSFTVLAHNKAEAISFSNLYAPEHLIINVEDADQWVDYIENAGSVFIGRWSPESVGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKTLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV*

Protein Length: 491

Fln nts: CGTCTGACCTTTTCATTGGCGTTGTTCGAACAAAACCCAGGCGTCGTGTTCTCAGTTATTACGATATATTATCCTGAGTTTCTTAGGGTTTGAAGAATTTGCAGGAGGCTTTGTATGGGTGTTCGTCTGCA_-_ATGAGTTTGGAGGGAAGCTTGGCGGGCTGTCGCATTCCATGCCGATCCATTTCACCATTTAAACATCCATCTTTGATCTGCAGAGTCAACAGGCTTAACCTCCGTTCTCCTTCxxxxxxCTCTATCACAGGTACGAGAAGTGAACTGCTTGCAGCTACTAGAATGAAGACATACAGACTAGCAGACCTCCACTCTACTGAGATTCACAATCTCAAGTCTCGTCCTCGTCTTGATTTTTCTTCTATGTTTGGTGTGGTTGGGCCAATTATTGAGGATGTTCGTAAAAGAGGGGACGCTGCTGTTATCGACTATACCACCAAGTTTGATGGTGTTAACTTGGATAAAGTTGTGGAGTGTGTTGCTGATCTACCAGATCCAAAGCTTGACCCAGCTGTACAAGCAGCATTTGATGTGGCTTATGACAATATAAGGGCCTTTCATGCTGCTCAACGAAATCCGGAACAAGTTATTGAGAACATGAAAGGAGTAAGGTGCAAACGTGTAGCCAGAAGCATTGGCTCAGTGGGTCTTTATGTGCCAGGTGGAACAGCAGTTCTACCTTCAACAGCTTTAATGCTTGCTGTGCCGGCACAGCTTGCAGGCTGCAAGATTATTATACTTGCAAGTCCTCCAAGGCCAGATGGTTCCATTTGCAAGGAAGTGCTTTATTGTGCAAAGAAAGCAGGTGTAACACACATACTAAAAGCTGGTGGTGCTCAGGCAGTTTCAGCTATGGCCTGGGGAACAACATCATGTCCAAAGGTGGAGAAAATCCTTGGTCCTGGAAACCAATATGTAACAGCTGCGAAGATGATTTTGCAGAATAGTGAAGCGATGATATCTATCGACATGCCAGCAGGTCCATCAGAGGTTCTTGTGATTGCTGATAAGCATGCAAATCCTGTTTACATAGCTGCAGATTTGCTATCCCAGGCTGAACATGGGCCTGATAGTCAGGTTGTTCTTGTGCTTGTGGGAGAGGGTGTGAATCTGGATGAAATTGAGATGGAACTGGAGAAGCAATGCAAAAGTCTTCCACGTGGGCAGTTTGCTCTCAAGGCTCTGTCTCATAGCTTTACTGTTCTTGCCCATAACAAGGCAGAGGCAATTTCCTTCTCTAATTTGTATGCACCTGAGCATTTAATCATAAATGTTGAAGATGCAGATCAGTGGGTGGATTATATTGAAAATGCAGGTTCTGTATTCATAGGAAGGTGGAGTCCTGAGAGCGTTGGGGACTATGCGAGTGGCACAAATCATGTGCTTCCTACTTACGGATATGCAAGGATGTATGGAGGTGTATCGTTGGATTCCTTCATGAAGTATATCACTGTGCAATCCTTGACAGAGGAAGGCCTGAAAACTCTTGGTCCACATGTTGTTAAGATGGCAGAGGTAGAAGGTTTGGAGGCTCATAAGAGAGCAGTGACATTGCGGTTGCAAGATATTGAAACAAGATCATCAGTTTGA___GACTTTAGCATGATGTCAGGGGTATCCATTTCTCCACGGTGATTTAGGAAAGTTTGAAAATTATCCTCCGTTATTCAAAGTTGATGACATGATTTTTTTCAAGCGGTGGAAATCTTCTGAATTAGAGTTCTACCAAGTTTCTGGTGCATATTTCTTGATATAATCTTACAAATCAGCATTGATGAATACAAATTTTTGCATCAAAATTGATTCGATATTTAGGCAAGATCATTAGTTTGAAGATTAGCTTTA

Fln Alignment:

Contig11024___MSLEGSLAGCRIPCRSISPFKHPSLICRVNRLNLRSPSxxSITGTRSELLAATRMKTYRLADLHSTEIHNLKSRPRLDFSSMFGVVGPIIEDVRKRGDAAVIDYTTKFDGVNLDKVVECVADLPDPKLDPAVQAAFDVAYDNIRAFHAAQRNPEQVIENMK-------GVRCKRVARSIGSVGLYVPGGTAVLPSTALMLAVPAQLAGCKIIILASPPRPDGSICKEVLYCAKKAGVTHILKAGGAQAVSAMAWGTTSCPKVEKILGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHANPVYIAADLLSQAEHGPDSQXXXXXXXXXXNLDEIEMELEKQCKSLPRGQFALKALSHSFTVLAHNKAEAISFSNLYAPEHLIINVEDADQWVDYIENAGSVFIGRWSPESVGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKTLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV
A9NV24_______________MSLAGSLAGCRTPCRPYSPFKHSSLICRVNGLNIRSSSxxSSSGTRSELFTSTRMKTYRLADLHSTQIDHLKARPRIDFSSMFGVVGPIIEDVRKRGDVAVIDYTTKFDGVNLDKVVECVADLPDPKLDSAVQAAFDVAYDNIRAFHAAQRNPERVVENMKVGSVLGRGVMCKRVARSIDSVGLYVPGGTAVLPSTALMLAVPAQLAGCRIIILASPPRPDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTTSCPKVEKILGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHANPVYIAADLLSQAEHGPDSQVVLVLVGEGVNLDEIEMELEKQCKSLPRGQFAAKALTHSFTVLARNKAEAISFSNLYAPEHLIINVEDADQWVDYIENAGSVFLGRWSPESIGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKSLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
21		66	33		0.997452
50	40			60	1.0
51		40		60	1.0
54		60		40	1.0
55	60		40		1.0
57		40		60	1.0
59	60		40		1.0
61		40		60	1.0
64			60	40	1.0
65	60	40			1.0
66	40			60	1.0
293	87	12			0.992554
351	16		83		0.994512
356		83		16	0.994512
391	20		80		0.995493
473	85		14		0.993533
877	85			14	0.993533
879		85		14	0.993533
880	85		14		0.993533
881			14	85	0.993533
882		85	14		0.993533
1637		77		22	0.999999
1644		11		88	0.923564
1645			11	88	0.923564
1646	88			11	0.923564
1647		11	88		0.923564
1649	88			11	0.923564
1650	77	11	11		0.968132
1652		11	77		0.968132
1653		11		88	0.923564
1657	87		12		0.992554
1658	87	12			0.992554
1659	87			12	0.992554
1660	75		25		1.0
1662		12		87	0.992554
1666	12	87			0.992554
1746	14		85		0.993533
1790	80			20	0.995493
1792	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain