SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11017

Length: 1307 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11017

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein L19 n=5 Tax=Picea sitchensis RepID=A9NRT3_PICSI	-	-	79%
FL-Next	sp=Ribosomal protein L19; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Ribosomal protein L19	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Ribosomal protein L19/L19e, domain 3	IPR015974	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02780.1	emb2386 Ribosomal protein L19e family protein chr1:608120-609391 REVERSE LENGTH=214	90%
RefSeq	Arabidopsis thaliana	NP_171777.1	60S ribosomal protein L19-1 [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002329697.1	predicted protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRT3

Fln msg:

Fln protein: MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPTETTPAPTQTAPEVSKKSKK*

Protein Length: 207

Fln nts: ATGGGGAATGTTGATATGGAACCCTTACTCTACCGCGGTTCTTTCCTTTCACCCCGAAAGCCAAGCTTGGGTTAGGTCATCTCTCCACAAACCCTAGTGTTCCCTCTCTATATATCTTTATAGATATACCAGGAGCTTCTCTTTTGGATCATTTTTGAGGTCGGCGGTGCATTTCTACTGTTGATTTGCTGAAACAGCGTCGATTCGTAGGCGAAA_-_ATGGTGTCGTTAAAGTTACAGAAACGCCTAGCAGCGAGCGTCCTCAAGTGTGGTAAAGGAAAAGTTTGGCTCGATCCTAATGAAGTCAGTGAGATTTCCATGGCTAACTCAAGGCAGAATATTCGCAAACTTGTTAAGGATGGGTTTGTTATTAGAAAGCCAATGAAAATTCACTCTCGTGCTCGAGCTCGTCGAGCATTGGAAGCAAAGAGGAAAGGGCGGCACTCTGGATATGGTAAGAGAAAAGGTACACGGGAGGCAAGATTGCCTACTAAGATTTTGTGGATGAGGCGGATGCGAGTTTTACGCCGATTGTTACGTAAGTACAGAGAGTCAAAGAAGATTGACAAGCATATGTACCATGACATGTACATGAAAGTCAAGGGTAATGTCTTCAAGAACAAGCGTGTCTTAATGGAAAGTATTCACAAGTCAAAGGCAGAAAAGGCCAGAGAAAAGACTCTGTCAGACCAGTTTGAAGCAAAACGTGCCAAGAACAAGGCTTCACGTGAAAGGAAGATTGCCAGGAGGGAAGAGCGGTTGGCTCAGGGTCCAACTGAGACAACACCGGCACCTACACAAACGGCTCCAGAGGTATCAAAGAAGTCAAAGAAGTGA___GGGGGCAGAATTCTTCCAAGTCACGAGGGAATGATTTTTTTGTGGGGCTTCTATGGTTCACCTCCCAAAGGAGTAATAGGGAATCAACTGAAGTTTTCTGTTTAAACTAGTAAGAAGATTCTGTACCAGAGTCTCTTTACTACAGTCAGAACTGAGAGTGGGGCATCATCTCATCTCTAAAAGATGATGCCATAGCTTTATATTTTATTGATTGAACGTGTTTTGGCAAATAACCATTAATGGAATGGATTGAGTTCCTGCTTATCTTGTATTTCTGGTGACGAGCCTTTCTTTTTAAAAATATCCAGTATTTTTGGCTGTTTTCTACCATTGGATTTAGGTAGGTTGTACAAGTAGATAGCTGAACTTATTTAACACTTCGAAAATTATAGTTAATGTTACAATTGTTATATGTGGAGCTTTTCCAGCCTCATCTATTAAGTTGATAACTGAGAATGCCAAAAATGACTGGC

Fln Alignment:

Contig11017___MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSXXXXXXXXXXXXXXXHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGXXXXXXXXXXXXXXVSKKSKK
A9NRT3_______________MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIRKPMKIHSRARARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPTETTPAPTQTAPEVSKKSKK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1243	4		86	0.999539
1256		17	76	1.0
1296		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain