SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11013

Length: 2379 nt

UniGene Fasta

>sp_v3.0_unigene11013
CGTCGTGACCTTGGCTGTCACTCAAGGTGCACCGTTCTCACAGTGCTCTGTGCTCGAAAGCATCGGAACCTTGGGGAACTTTACACGTCTTTCGAACAGAAGGTTGTGACTTCAACATCCAACTTAAGTCTCCAATTGAATTGCATTGTAGGTGAAGATTGTGGTTAGAGTAGTCGACTTCGTCCACACCTGTATTGGTTGGCTACCGAGCAGCCAAGTATTCCTTTCTTGGCTCCACTTTTCCAAACTTTTGAGATATTTAGACACCCAGTTCGTTGAATTAGCCCGAGCAGGCCTGGTGCTGGAATATTGTTATATAGAGTGAGGAATACAGGCCATTAGATTGCAGAAAGTGGCTTGAATTATGGGCAAAATGGATTTTCAGAGGATTCTATTGCAAGCTTTTATTTTACATTTGGTACTGTTTCCTTGTCTGGGTCTTGGATTCGGCCCTCACAAGCACAAAATCAATGGACCTATTAAGACAATTGTGGTGTTGGTGATGGAGAATAGGTCATTTGATCATATGTTGGGGTGGCTGAAGTCCTGGAACGATGAGATAGATGGTGTTACAGGCAAGGAATCCAATCCCTTGAACACCATGGATGAGGATTCCCCAATAATCAACTTCAGTGATGGTTCAGAGTATGTTGACCCTGATCCAGGCCACAGCTATCAGGCCATAAGGGAGCAGATTTTTGGGTCAGAGGATACCTCAGCAAGGCCAGCCCCCATGAATGGATTTGCCCAACAAGCGGAAAACATGAGTGAGGGCATGTCAACGCATGTGATGAGGGGGTTTAGGCCGGAGGATCTTCCTGTCTATTCCACCCTTGCCACCGAATTTGCGTTATTTGATAGGTGGTTTGCTTCTGTGCCCACTTCAACACAGCCCAATAGATTTTATGTCCATTCTGCAACTTCTCATGGTGCGTGCAGCAATGTCAAGAAGGCTTTGATAAAAGGATTCCCACAGGATACCATTTTTGATTCTCTTGAAGAAGCAGGACTATCGTTTGGTATTTATTATCAGAACATCCCTGCAACTCTGTTTTTCAAGTCCCTTAGAAGGCTGAAACATGTGTTGAAGTTTCATGATTATATGGCCTCATTCAAATTGCATGCCAAGCTGGGCATTCTGCCCAACTATGTTGTGATTGAGCAAAGATACTTTGATGTCCACCTTTTACCTGCCAATGACGATCACCCTTCTCATGATGTGGCCGAGGGACAGAAATTTGTGAAAGAAGTGTATGAAACGCTAAGAGCCAGTCCTCAGTGGAATGAAATGATGTTTCTTATCACTTATGATGAGCATGGAGGATTCTTTGATCATGTACCGACTCCAGTTACCCATGTGCCCAATCCGGATGGTATAATTGGTCCTGAGCCTTACTACTTCACCTTCGATCGGCTCGGAGTTCGCGTGCCAACCATTTTGATATCTCCTTGGATTGAAAAAGGAACAGTCATCCATGAACCAAATGGGCCTACTCCACATTCACACTATGAACATTCATCTGTGCCTGCAACAGTAAAGAAACTTTTCAATCTTAAGGCAGACTTCTTAACAAGGAGAGATGCTTGGGCTGGCACTTTCGAAAGCTATTTTCACATTAGAGATACCCCACGGACTGATTGTCCAGAAACACTTCCGGATCCAAAAAAGTCATTGAGGCCTACTGTAACAAATGAAGACAAGGAGATTTCAGAGTTTCAGGAGGAGCTTGTTATACTTGCTGCACAGTTGATTGGGGATGACATGCTCAAAAACTATTCTGAGTTTGCGAAACATATGACAGTGAAACAAGCAAATATTTATGTAGAGGAAGCAGTCACTCGTTTCTTAGAAGCTGGGAAGTTGGCCCTGAAGGCTGGGGCCAATGAATCTGCCATCATTCAAATGAGACCTGCCTTAACAAGCAGGAAGGCAGGACCATTTGCTTCTGCATATGTGCAGTCTTCCTAACTCAATGAATCATGTACATTTTTCTCAAAGGTATGCCAAAGCATTTGTCGTGGTTCATTGTTTCATAAATACTAAACAAGTATTTTGAAATACCAAGTGCCCACTTTGTAATTATCAATGTAATGCTATTCTAGAAGTAGTTATATCCCTAAAATACATTACAGCATTTCTATTGGTATTAGCTACGTCAGCTTGCACTTATTGAATCAAGCCTGACTAAGTTTTAGTTTACATTAAAATTATGAAGTTCCTGATAAAGTGTTGTCTATTGCCAAAGTTTATCTGCATTTAAAAGTTCCTGGTAAAAAATTGGAAATCTTCTCACATTGGAAGGTGGGCACTGATTGCATAGTAAACATAACTTGATAACTATCCTTCGTATTTCGCTAATGCAACTGAACACACTTATC

Ace file of the UniGene sp_v3.0_unigene11013

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phospholipase C [Arabidopsis thaliana] gb\|AAM74513.1\| At1g07230/F10K1_4 [Arabidopsis thaliana] dbj\|BAC22506.1\| phosphatidylglycerol specific phospholipase C [Arabidopsis thaliana] gb\|AAW80856.1\| At1g07230 [Arabidopsis thaliana] gb\|AEE28095.1\| phospholipas	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoesterase	IPR007312	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G07230.1	NPC1 non-specific phospholipase C1 chr1:2220509-2222778 REVERSE LENGTH=533	70%
RefSeq	Arabidopsis thaliana	NP_172203.2	phospholipase C [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002299814.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVD6

Fln msg:

Fln protein: MGKMDFQRILLQAFILHLVLFPCLGLGFGPHKHKINGPIKTIVVLVMENRSFDHMLGWLKSWNDEIDGVTGKESNPLNTMDEDSPIINFSDGSEYVDPDPGHSYQAIREQIFGSEDTSARPAPMNGFAQQAENMSEGMSTHVMRGFRPEDLPVYSTLATEFALFDRWFASVPTSTQPNRFYVHSATSHGACSNVKKALIKGFPQDTIFDSLEEAGLSFGIYYQNIPATLFFKSLRRLKHVLKFHDYMASFKLHAKLGILPNYVVIEQRYFDVHLLPANDDHPSHDVAEGQKFVKEVYETLRASPQWNEMMFLITYDEHGGFFDHVPTPVTHVPNPDGIIGPEPYYFTFDRLGVRVPTILISPWIEKGTVIHEPNGPTPHSHYEHSSVPATVKKLFNLKADFLTRRDAWAGTFESYFHIRDTPRTDCPETLPDPKKSLRPTVTNEDKEISEFQEELVILAAQLIGDDMLKNYSEFAKHMTVKQANIYVEEAVTRFLEAGKLALKAGANESAIIQMRPALTSRKAGPFASAYVQSS*

Protein Length: 536

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTGCACCGTTCTCACAGTGCTCTGTGCTCGAAAGCATCGGAACCTTGGGGAACTTTACACGTCTTTCGAACAGAAGGTTGTGACTTCAACATCCAACTTAAGTCTCCAATTGAATTGCATTGTAGGTGAAGATTGTGGTTAGAGTAGTCGACTTCGTCCACACCTGTATTGGTTGGCTACCGAGCAGCCAAGTATTCCTTTCTTGGCTCCACTTTTCCAAACTTTTGAGATATTTAGACACCCAGTTCGTTGAATTAGCCCGAGCAGGCCTGGTGCTGGAATATTGTTATATAGAGTGAGGAATACAGGCCATTAGATTGCAGAAAGTGGCTTGAATT_-_ATGGGCAAAATGGATTTTCAGAGGATTCTATTGCAAGCTTTTATTTTACATTTGGTACTGTTTCCTTGTCTGGGTCTTGGATTCGGCCCTCACAAGCACAAAATCAATGGACCTATTAAGACAATTGTGGTGTTGGTGATGGAGAATAGGTCATTTGATCATATGTTGGGGTGGCTGAAGTCCTGGAACGATGAGATAGATGGTGTTACAGGCAAGGAATCCAATCCCTTGAACACCATGGATGAGGATTCCCCAATAATCAACTTCAGTGATGGTTCAGAGTATGTTGACCCTGATCCAGGCCACAGCTATCAGGCCATAAGGGAGCAGATTTTTGGGTCAGAGGATACCTCAGCAAGGCCAGCCCCCATGAATGGATTTGCCCAACAAGCGGAAAACATGAGTGAGGGCATGTCAACGCATGTGATGAGGGGGTTTAGGCCGGAGGATCTTCCTGTCTATTCCACCCTTGCCACCGAATTTGCGTTATTTGATAGGTGGTTTGCTTCTGTGCCCACTTCAACACAGCCCAATAGATTTTATGTCCATTCTGCAACTTCTCATGGTGCGTGCAGCAATGTCAAGAAGGCTTTGATAAAAGGATTCCCACAGGATACCATTTTTGATTCTCTTGAAGAAGCAGGACTATCGTTTGGTATTTATTATCAGAACATCCCTGCAACTCTGTTTTTCAAGTCCCTTAGAAGGCTGAAACATGTGTTGAAGTTTCATGATTATATGGCCTCATTCAAATTGCATGCCAAGCTGGGCATTCTGCCCAACTATGTTGTGATTGAGCAAAGATACTTTGATGTCCACCTTTTACCTGCCAATGACGATCACCCTTCTCATGATGTGGCCGAGGGACAGAAATTTGTGAAAGAAGTGTATGAAACGCTAAGAGCCAGTCCTCAGTGGAATGAAATGATGTTTCTTATCACTTATGATGAGCATGGAGGATTCTTTGATCATGTACCGACTCCAGTTACCCATGTGCCCAATCCGGATGGTATAATTGGTCCTGAGCCTTACTACTTCACCTTCGATCGGCTCGGAGTTCGCGTGCCAACCATTTTGATATCTCCTTGGATTGAAAAAGGAACAGTCATCCATGAACCAAATGGGCCTACTCCACATTCACACTATGAACATTCATCTGTGCCTGCAACAGTAAAGAAACTTTTCAATCTTAAGGCAGACTTCTTAACAAGGAGAGATGCTTGGGCTGGCACTTTCGAAAGCTATTTTCACATTAGAGATACCCCACGGACTGATTGTCCAGAAACACTTCCGGATCCAAAAAAGTCATTGAGGCCTACTGTAACAAATGAAGACAAGGAGATTTCAGAGTTTCAGGAGGAGCTTGTTATACTTGCTGCACAGTTGATTGGGGATGACATGCTCAAAAACTATTCTGAGTTTGCGAAACATATGACAGTGAAACAAGCAAATATTTATGTAGAGGAAGCAGTCACTCGTTTCTTAGAAGCTGGGAAGTTGGCCCTGAAGGCTGGGGCCAATGAATCTGCCATCATTCAAATGAGACCTGCCTTAACAAGCAGGAAGGCAGGACCATTTGCTTCTGCATATGTGCAGTCTTCCTAA___CTCAATGAATCATGTACATTTTTCTCAAAGGTATGCCAAAGCATTTGTCGTGGTTCATTGTTTCATAAATACTAAACAAGTATTTTGAAATACCAAGTGCCCACTTTGTAATTATCAATGTAATGCTATTCTAGAAGTAGTTATATCCCTAAAATACATTACAGCATTTCTATTGGTATTAGCTACGTCAGCTTGCACTTATTGAATCAAGCCTGACTAAGTTTTAGTTTACATTAAAATTATGAAGTTCCTGATAAAGTGTTGTCTATTGCCAAAGTTTATCTGCATTTAAAAGTTCCTGGTAAAAAATTGGAAATCTTCTCACATTGGAAGGTGGGCACTGATTGCATAGTAAACATAACTTGATAACTATCCTTCGTATTTCGCTAATGCAACTGAACACACTTATC

Fln Alignment:

Contig11013___IMGKMDFQRILLQAFILHLVLFPCLGLGFGPHKHKINGPIKTIVVLVMENRSFDHMLGWLKSWNDEIDGVTGKESNPLNTMDEDSPIINFSDGSEYVDPDPGHSYQAIREQIFGSEDTSARPAPMNGFAQQAENMSEGMSTHVMRGFRPEDLPVYSTLATEFALFDRWFASVPTSTQPNRFYVHSATSHGACSNVKKALIKGFPQDTIFDSLEEAGLSFGIYYQNIPATLFFKSLRRLKHVLKFHDYMASFKLHAKLGILPNYVVIEQRYFDVHLLPANDDHPSHDVAEGQKFVKEVYETLRASPQWNEMMFLITYDEHGGFFDXXXXXXXXXXNPDGIIGPEPYYFTFDRLGVRVPTILISPWIEKGTVIHEPNGPTPHSHYEHSSVPATVKKLFNLKADFLTRRDAWAGTFESYFHIRDTPRTDCPETLPDPKKSLRPTVTNEDKEISEFQEELVILAAQLIGDDMLKNYSEFAKHMTVKQANIYVEEAVTRFLEXXXXXXXXXXNESAIIQMRPALTSRKAGPFASAYVQSS
A9NVD6_______________MMGKMEFQRILLQAFVLHLVLFPSLGLEFGPHKPKINGPIKTIVVLVMENRSFDHMLGWLKAWNDEIDGVTGKESNPLSTTDDNSPIINFADGSEYVDPDPGHSYQAIREQIFGSEDTSARPAPMNGFAQQAENMSEGMSTHVMRGFRPEALPVYATLATEFALFDKWFASVPTSTQPNRFYVHSATSHGSCSNVRRDLMKGFPQNTIFDSLEESGLSFGIYYQNIPATLFFKSLRRLKHVFKFHDYAASFKLHAKLGTLPNYVVIEQRYFDVDLLPANDDHPSHDVAEGQKFVKEVYETLRASPQWNEMMFLITYDEHGGFFDHVPTPVAHVPNPDGIIGPEPYYFNFDRLGVRVPTILISPWIDKGTVIHEPNGPTPHSHFEHSSVPATVKKVFNLKADFLTRRDAWAGTFESYLHIRDTPRTDCPETLPDPIKSLRPTLTNEDKEISEFQEELVILAAQLIGDDMLKNYSELGKHMTVKQANGYVEDAVARFLEAGKLALKAGANESAIIQMRPALTSRKAGPFTSAFVQSS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
103			66	33	0.997452
106			33	66	0.997452
108			33	66	0.997452
159			80	20	0.995493
162		20		80	0.995493
211	83		16		0.994512
237	20	80			0.995493
293		85		14	0.993533
294	85	14			0.993533
315	14			85	0.993533
316		14		85	0.993533
389	14		85		0.993533
921	90	10			0.90298
949	87		12		0.992554
1657		75		25	0.996473
1990		2		92	0.987114
2134	92	5		1	0.999976
2226	8	13		73	1.0
2230	18		81		1.0
2250		18		81	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain