SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11009

Length: 1642 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11009

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin influx carrier protein n=1 Tax=Zinnia violacea RepID=C0SU69_ZINEL	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Auxin influx carrier component	-	-	2.607e-29	-

Source	Gene names
Sma3	AIC1; AIC2; AIC3; AUX; AUX1; At1g77690; At2g21050; At2g38120; At5g01240; CS-AUX1; F16M14.5; F26H11.19; F7J8_220; GSVIVT00015336001; GSVIVT00021482001; GSVIVT00029256001; GSVIVT00036093001; LAX1; LAX2; LAX3; LAX4; LAX5; LOC_Os01g63770; LOC_Os03g14080; LOC_

Source	GOs	Term	Type	Identity
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	auxin influx transmembrane transporter activity	GO:0010328	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	establishment of planar polarity	GO:0001736	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	root hair cell differentiation	GO:0048765	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	WIYLD domain	IPR018848	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38120.1	AUX1, WAV5, PIR1, MAP1 Transmembrane amino acid transporter family protein chr2:15973493-15976792 FORWARD LENGTH=485	51%
RefSeq	Arabidopsis thaliana	NP_565882.1	auxin transporter protein 1 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002322969.1	auxin influx carrier component [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKH8

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 397 - 480

Fln protein: RRDLGCQ*IFFHLLYSVVGIWTCYMLSCLYLEYRARKAKEGVHFKKHVIQYHEVMGYLVAPWLKGVCLFFNIVTMGTVAVVQIIACASNAYYLNSNYNKREWALIFGAISMLTVLLPSFHNFRIWSIIGVVTTTYTAWYMVIAGLLHGQIANVKHSAPVSMEQFFTGTTNILFAFGGHAITIEIMHAMWTPKAYKYVYLATVGYVMTITMPHCIILYWAFGDELLTHSNAFSVLPASTFRSIGLGFMIIHQAVAFGLYVMPLNFMWEKLRRDLGxxxYLVRIIARLPVAMLLWLFALLFPFFGPLNSVIGSFIMSFSVYIIPCTAYLIVFRTKTSRQDASEKGGKWMPKWKGILTMNLGIVILVGVLGFGFGSWASLSNLVKQVNSFGILDKCYQC*

Protein Length: 398

Fln nts: CGTCGTGACCTTGGCTGTCAGTGAATTTTCTTCCATTTGTTGTATTCTGTTGTAGGTATCTGGACTTGCTACATGCTTTCATGCCTCTATTTGGAGTACCGAGCTCGGAAGGCAAAAGAAGGTGTCCACTTCAAGAAGCATGTTATCCAGTACCACGAGGTCATGGGCTACTTGGTTGCACCTTGGCTCAAGGGGGTTTGTCTCTTCTTCAACATTGTGACCATGGGAACTGTGGCAGTTGTACAAATTATTGCATGTGCAAGCAATGCATATTATCTGAATTCGAATTACAACAAAAGAGAGTGGGCACTCATATTTGGCGCCATATCGATGTTAACTGTCCTCCTTCCGTCCTTCCACAATTTCCGAATATGGTCTATCATTGGTGTGGTGACTACAACATATACAGCCTGGTACATGGTCATTGCGGGCCTTCTTCACGGCCAGATAGCAAATGTCAAACATTCTGCCCCTGTATCCATGGAGCAGTTTTTCACTGGGACTACCAACATACTATTTGCATTTGGAGGCCATGCAATTACCATAGAGATTATGCATGCTATGTGGACCCCAAAGGCATATAAATATGTGTACCTAGCAACGGTGGGGTATGTCATGACAATTACCATGCCACACTGTATAATACTCTACTGGGCATTTGGAGACGAGCTTTTAACGCATTCCAACGCCTTCTCAGTGTTGCCTGCTTCTACCTTCAGAAGCATAGGCTTGGGTTTCATGATTATTCACCAGGCAGTTGCCTTTGGGCTGTACGTGATGCCACTGAACTTCATGTGGGAAAAATTGCGTCGTGACCTTGGCxxxxxxxxxTATCTGGTCAGAATCATAGCGAGGCTCCCGGTGGCAATGTTGCTGTGGTTATTCGCATTGTTGTTTCCTTTCTTTGGGCCTCTTAACAGCGTAATAGGCTCTTTTATTATGAGCTTCTCGGTCTATATTATCCCATGTACCGCCTATCTCATTGTCTTCAGGACAAAAACGTCCAGACAGGACGCTTCGGAAAAGGGAGGAAAGTGGATGCCAAAATGGAAAGGGATTTTGACCATGAATTTGGGCATTGTCATCCTCGTCGGAGTGCTGGGATTCGGTTTTGGGAGTTGGGCGAGCCTTTCCAACCTGGTTAAACAAGTCAATTCATTTGGAATTCTTGACAAGTGTTATCAATGCTAGCAAAAAGTAAATCACACAGTCAAGAGCTCTAGCATCAAAATTGCTGAGCTTAGTAACTTTGACTTCCAATTTCAACCTTGTATTAATAAAGAATGCACCATCTGATCAGTGGGATGGTTTTTACTATGTCAGATATTTTATTCCAAATACCAACTGTCAGTGAGCTGTATTTTACAATGTTTGAAATGTATACGTCATGTATTGAAGCTATTTTTATCCAAATAACTTTGCATTGGAATTTGGAACTCTATGGGTAATAGAAGTCAATGGTGTAATATTCTATACGGAAATCGTGACTTGACTTCGATATCAATTTGTTTGGTTTGTCGTCGACACGTGCGCCAATGTTGAAAAGCGTCCGAAGAGATTTACGCGTCAAGAAACTGGATACTCCATAAAGTACAGCGACAACACGTGAAATGGCAGGACGTCATGGATTTCTCATAGGTGGT

Fln Alignment:

Contig11009___IFFHLLYSVVGIWTCYMLSCLYLEYRARKAKEGVHFKKHVIQYHEVMGYLVAPWLKGVCLFFNIVTMGTVAVVQIIACXXXXXXXXXXXXKREWALIFGAISMLTVLLPSFHNFRIWSIIGVVTTTYTAWYMVIAGLLHGQIANVKHSAPVSMEQFFTGTTNILFAFGGHAITIEIMHAMWTPKAYKYVYLATVGYVMTITMPHCIILYWAFGDELLTHSNAFSVLPASTFRSIGLGFMIIHQAVAFGLYVMPLNFMWEKLRRDLGCHxSRYLVRIIARXXXXXXXXXXXXXXXXXXXXNSVIGSFIMSFSVYIIPCTAYLIVFRTKTSRQDASEKGGKWMPKWKGILTMNXXXXXXXXXXXXXXXSWASLSNLVKQVNSFGILDKCYQC
B8LKH8_______________IFFHLLYAGVGIWTCYMLSCLYLEYRSRKEREGADFKRHVIQYHEVMGYLVGSWLKKAALFFNIVTMGSVAVVQIIACASNAYYLNSKYNKREWAVIFGGISLLTCLLPSFHNFRVWSIMGVVTTTYTAWYMVIAGLLHGKIPDVKHSAPQDMEKFFTGTTNILFAFGGHAITIEIMHAMWQPKVYKYVYLWTVGYVLTITIPHCIVLYSNFGDELLNHSNALSVLPHSVFRSIALCFMICHQALAFGLYVMPLNFMWEKV---LGVHxSTYLIRVVCRVPVVLLLWLLALVFPFFGPLNSMIGSLIMSFSVYIVPCVAYILVYKTKTSREEAAEKLPSWMPKWNGVVAINAAIVVLIAVLGFCLGSWASVSNLIKQVHNFGLFEKCYQC

SNPs (tot: 86)

Position	A %	C %	G %	T %	Probability
33			25	75	0.996473
34	25	75			0.996473
36	75	25			0.996473
39			25	75	0.996473
41		25		75	0.996473
253			14	85	0.993533
255	85	14			0.993533
256			14	85	0.993533
260	85	14			0.993533
262			85	14	0.993533
263			14	85	0.993533
266	85			14	0.993533
267	85		14		0.993533
268			85	14	0.993533
271	85	14			0.993533
303	71	28			1.0
314	71		28		1.0
315	22	77			0.999999
318	88		11		0.923564
321		11		88	0.923564
323		10		90	0.90298
325			90	10	0.90298
330	90	10			0.90298
334		90	10		0.90298
335	10		70	20	0.999998
336	90	10			0.90298
341	90	10			0.90298
344		20		80	0.999996
345	10		90		0.90298
347		80		20	0.999996
356	20		80		0.999996
392		18		81	0.999994
396		18	81		0.999994
410		20		80	0.999996
421	70			30	1.0
423	70		30		1.0
424		30		70	1.0
429	71		28		1.0
568		10		90	0.90298
571		10	90		0.90298
573	90			10	0.90298
574		90	10		0.90298
575	10	90			0.90298
578	90			10	0.90298
579	90			10	0.90298
580	90		10		0.90298
582			90	10	0.90298
583		90		10	0.90298
584	90		10		0.90298
586	22	11			0.999999
588		11		88	0.923564
589	88			11	0.923564
590	88	11			0.923564
749	80	20			0.995493
750			20	80	0.995493
752	80	20			0.995493
753			20	80	0.995493
755		80	20		0.995493
760	80			20	0.995493
764	80			20	0.995493
767		20		80	0.995493
768	20		80		0.995493
794		83		16	0.994512
816		20		80	0.995493
865	20	80			0.995493
876	25		75		0.996473
884			75	25	0.996473
935		50		50	1.0
936	25		75		0.996473
965	40		60		1.0
968		60		40	1.0
970	60		40		1.0
974	40			60	1.0
984	60		40		1.0
986		50		50	1.0
987			50	50	1.0
995	50	50			1.0
996	50			50	1.0
1017			33	66	1.0
1028		33		66	1.0
1061	66		33		1.0
1082	30		70		1.0
1139		20	80		0.999996
1182		88		11	0.923564
1184		11		88	0.923564
1204	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain