SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11002

Length: 3096 nt

UniGene Fasta

>sp_v3.0_unigene11002
TAGGGACAGGGAAACCTCAGGGTGTGGGTGTAAGGACATCAGATGAGGAAGTACGAGGTCAAACTCAAAGGGAATCAGGAAGCTCAATGAGGACATCTGATGGATCTGATCGTGGGAGTGAAACATCTGTTCAACGGGTTTCAAAGGACTTAAAGGAAGCATTGTCCACGTTACAACAGACATTTGTTGTATCAGATGCAACCAAACCAGATTATCCTATTGTATATGCTAGTGCTGGATTTTTCGACATGACTGGCTACTCTCCAAAAGAAGTTATTGGAAGAAACTGCCGCTTTCTTCAGGGTGCTGGTACAGATTCTGTTGAAGTTTCAAAGATACGGGAAGCTGTGGCTACAGGGAAAAGCTACTGTGGACGCTTGCTGAATTATAAGAAGGATGGGAAGCCGTTTTGGAACCTTCTTACTATCACACCCATAAAGGATGGCAGTGGGAAAGTTATTAAATACATAGGAATGCAAGTTGAGGTGAGCAAGTATACAGAAGGTTCAAAGAATGGGGCACTACGGCCTAATGGATTACCAGAGTCTTTAATTCGATATGATGCCCGTCAGAAAGACATAGCCGTGAATTCTGCCACAGAGGTTCTGCAGGCTGTAAAGTATCCCCGTTCAGTTGCACAGTCTACAACTCAAATGAGTGCTTGCCATTCCGAGGGAACTCTATCACCACTGCATCTTGAATCTCTAGCAGACACGAAAGTTGAGAAGATTAATTCTGATGCTTCTAGTGGGCCTACTTCCCAAACGAGCCTAACAAATGATATATCAAGAAAAAGTGATGCTGGGATGAAACAGAGGAAATCAGGAAGACTCTCATTAATGGGGTTAACAGGAAAGAATCGTAGTCTTATGAAGAACCATGAAACCGAGCCAGCTATTGAACCTGAGGTTTTAATGACCAAGGATGAAGACAAAGCTGACAGCTTTGATATTTTGGAGAGAAAGAAAGAACTTCGGCAAGGCATTGATTTAGCAACAACACTTGAGCGTATTGAGAAAAATTTTGTGATCACAGACCCAAGGCTTCCTGACAATCCTATTATATTTGCATCTGACAGTTTCTTGGAGCTGACAGAGTATTCTCGTGAAGAAATTCTAGGAAAAAATTGTCGCTTTCTTCAAGGGCCTGAAACAGACGGAGATACTGTCCAACAAATAAGAGATGCTATTAGGGATCAAAGGGAGATTACTGTGCAGTTGATCAACTATACCAAGAGTGGGAAGAAGTTTTGGAACTTATTCCACTTACAACCTATGCATGATCAAAAGGGTGAACTACAATACTTCATTGGAGTTCAACTCGATGGAAGTGAGCATGTGGAACCACATAAAAATCGTCTTTCAGAAACCACAGAGTTAGCAAGTGCAAAATTGGTTAAGGCAACTGCTGGGAATGTTGATGATGCTGTGAGAGAGCTTCCTGATGCAAACTTGAGACCTGAGGACCTATGGGCAGTGCATTCAACCATAGCTATTCCCAAGCCCCATAAAATGAATAACCCTTCTTGGAAAGCAATAAAGAAGATACAAGAGGCTGGCGAGCAAATAGGTTTGAAGCATTTCAAACCTATCAGGCCTTTAGGGTCCGGTGACACAGGAAGTGTTCATTTGGTAGAATTGCGTGAAACTGGTGAATTGTTTGCAATGAAAGCAATGGACAAGGAAGTGATGTTAAACCGTAATAAGGTGCATCGAGCTTGTATGGAAAGAGAAATAATGGCAACGTTGGACCATCCTTTCCTTCCAACACTTTATGCATCTTTTCAGACGAAGACACACGTGTGCTTAATTACTGATTTTGCCCCTGGAGGAGAGCTTTTCATGCTCATAGACAGACAACCTATGAAGGTTCTTCGTGAAGATGCTGCTCGATTCTATGTAGCAGAGGTTGTTGTCGCTTTGGAGTATCTTCATTGCCAAGGGATTGTTTACAGAGATCTGAAGCCTGAAAACTTGTTGCTTCAAAGCGACGGGCATTTATTATTGACAGATTTCGACTTATCATATTTGGCATCTTGTAAACCACAGTTAATAAGGTATACAGAGATTCCAGGGAAGAAAAGAAAAATGAAAAATGAACCACCTCCAACATTTGTTGCAGAACCAACAATTGCTTCAAACTCTTTTGTAGGGACAGAAGAATATATAGCACCGGAAATCATTACTGGCACAGGTCATAGTAGCGCTGTTGATTGGTGGGCTCTTGGGATCTTGTTGTATGAACTGCTTTATGGGCACACGCCATTTAGAGGAAAGAATAGGCAAAATACATTTGCGAAAATACTTCACAAGGATCTCACATTTCCCAGTAGCATCCCGGCAAGCTTGGCTGCGAGGCAATTAATACATAGATTGTTGCACAGAGACCCTGCAAATAGATTGGGCTCAAAAAGCGGAGCACATGAAATCAAACAACACCCTTTCTTCCGTGGGATACACTGGCCGCTCGTGCGTTGCATGAGTCCTCCTAAACTTGATGCACCTATCCAACTAATAGGAAAAGATCCTTTAATAGATGGCAAGATCGTGGATTCAAATTGGGATATGTAAAAGACGTTGGAACCAGACAAAGCTATTTATTACTGGTTTCACAGAGAGTGCAGGTAGTTCTGCATAGGGTTTCAGTCAAATATCCATTGGGCATGTTTTCAGTATGTCCGATGGTGCAAGAACATGAAACCTATCAATGGTTTTCATTCTCAATTGCTTGAGAAAAGTCACATTCTGTGTATTCCAGTTTGATAGATATCTGTAACTATTGGAAGCCTGCAACATGACTGCACCTTCTCCTATTGCCTTTTCTGTTAGCGAGTAATATCAACAGATTCTTTTTGCAGAGTTTATCAGCTTTGGTGGAGAATTTTAATCTTCGTGGCATGAGTGGACCTTGGTGCAACATAATTGTGATTAATTATTATTGTGTATATTTGTATTGGATATGTTTTAATGGAGAGACATCCAATAGTGCAGAGTGAGATTTATTGTTGTTGTAGTATATTAGTATGTGATATGCGTTTATGTAGAGACATTCGATTGTACAGAGTGAAAACATGGATGCATATCTGCAAAGTTTTAG

Ace file of the UniGene sp_v3.0_unigene11002

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Phototropin	-	-	4.81907e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	1.335e-08	-

Source	Gene names
Sma3	AT3G45780; AT4g26610; AcNPH1; Adi3; At1g16440; At1g53700; At2g34650; At3g12690; At3g14370; At3g45780; At4g26610; At5g55910; At5g58140; B1279D09.7; B1394A07.1; Bcpk1; CAV1; CHLREDRAFT_183965; CsPK3; F22G10.21; F3O9.24; GSVIVT00004851001; GSVIVT00009048001;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	internal side of plasma membrane	GO:0009898	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	-
Sma3	blue light photoreceptor activity	GO:0009882	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	sensory perception	GO:0007600	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	chloroplast relocation	GO:0009902	Biological Process	-
Sma3	chloroplast avoidance movement	GO:0009903	Biological Process	-
Sma3	chloroplast accumulation movement	GO:0009904	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	regulation of proton transport	GO:0010155	Biological Process	-
Sma3	negative regulation of anion channel activity by blue light	GO:0010362	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58140.2	-	68%
RefSeq	Arabidopsis thaliana	NP_851210.1	phototropin 2 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002298559.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY3

Fln msg: your sequence is longer than subject: 828 - 545

Fln protein: MRTSDGSDRGSETSVQRVSKDLKEALSTLQQTFVVSDATKPDYPIVYASAGFFDMTGYSPKEVIGRNCRFLQGAGTDSVEVSKIREAVATGKSYCGRLLNYKKDGKPFWNLLTITPIKDGSGKVIKYIGMQVEVSKYTEGSKNGALRPNGLPESLIRYDARQKDIAVNSATEVLQAVKYPRSVAQSTTQMSACHSEGTLSPLHLESLADTKVEKINSDASSGPTSQTSLTNDISRKSDAGMKQRKSGRLSLMGLTGKNRSLMKNHETEPAIEPEVLMTKDEDKADSFDILERKKELRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDGDTVQQIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMHDQKGELQYFIGVQLDGSEHVEPHKNRLSETTELASAKLVKATAGNVDDAVRELPDANLRPEDLWAVHSTIAIPKPHKMNNPSWKAIKKIQEAGEQIGLKHFKPIRPLGSGDTGSVHLVELRETGELFAMKAMDKEVMLNRNKVHRACMEREIMATLDHPFLPTLYASFQTKTHVCLITDFAPGGELFMLIDRQPMKVLREDAARFYVAEVVVALEYLHCQGIVYRDLKPENLLLQSDGHLLLTDFDLSYLASCKPQLIRYTEIPGKKRKMKNEPPPTFVAEPTIASNSFVGTEEYIAPEIITGTGHSSAVDWWALGILLYELLYGHTPFRGKNRQNTFAKILHKDLTFPSSIPASLAARQLIHRLLHRDPANRLGSKSGAHEIKQHPFFRGIHWPLVRCMSPPKLDAPIQLIGKDPLIDGKIVDSNWDM*

Protein Length: 829

Fln nts: TAGGGACAGGGAAACCTCAGGGTGTGGGTGTAAGGACATCAGATGAGGAAGTACGAGGTCAAACTCAAAGGGAATCAGGAAGCTCA_-_ATGAGGACATCTGATGGATCTGATCGTGGGAGTGAAACATCTGTTCAACGGGTTTCAAAGGACTTAAAGGAAGCATTGTCCACGTTACAACAGACATTTGTTGTATCAGATGCAACCAAACCAGATTATCCTATTGTATATGCTAGTGCTGGATTTTTCGACATGACTGGCTACTCTCCAAAAGAAGTTATTGGAAGAAACTGCCGCTTTCTTCAGGGTGCTGGTACAGATTCTGTTGAAGTTTCAAAGATACGGGAAGCTGTGGCTACAGGGAAAAGCTACTGTGGACGCTTGCTGAATTATAAGAAGGATGGGAAGCCGTTTTGGAACCTTCTTACTATCACACCCATAAAGGATGGCAGTGGGAAAGTTATTAAATACATAGGAATGCAAGTTGAGGTGAGCAAGTATACAGAAGGTTCAAAGAATGGGGCACTACGGCCTAATGGATTACCAGAGTCTTTAATTCGATATGATGCCCGTCAGAAAGACATAGCCGTGAATTCTGCCACAGAGGTTCTGCAGGCTGTAAAGTATCCCCGTTCAGTTGCACAGTCTACAACTCAAATGAGTGCTTGCCATTCCGAGGGAACTCTATCACCACTGCATCTTGAATCTCTAGCAGACACGAAAGTTGAGAAGATTAATTCTGATGCTTCTAGTGGGCCTACTTCCCAAACGAGCCTAACAAATGATATATCAAGAAAAAGTGATGCTGGGATGAAACAGAGGAAATCAGGAAGACTCTCATTAATGGGGTTAACAGGAAAGAATCGTAGTCTTATGAAGAACCATGAAACCGAGCCAGCTATTGAACCTGAGGTTTTAATGACCAAGGATGAAGACAAAGCTGACAGCTTTGATATTTTGGAGAGAAAGAAAGAACTTCGGCAAGGCATTGATTTAGCAACAACACTTGAGCGTATTGAGAAAAATTTTGTGATCACAGACCCAAGGCTTCCTGACAATCCTATTATATTTGCATCTGACAGTTTCTTGGAGCTGACAGAGTATTCTCGTGAAGAAATTCTAGGAAAAAATTGTCGCTTTCTTCAAGGGCCTGAAACAGACGGAGATACTGTCCAACAAATAAGAGATGCTATTAGGGATCAAAGGGAGATTACTGTGCAGTTGATCAACTATACCAAGAGTGGGAAGAAGTTTTGGAACTTATTCCACTTACAACCTATGCATGATCAAAAGGGTGAACTACAATACTTCATTGGAGTTCAACTCGATGGAAGTGAGCATGTGGAACCACATAAAAATCGTCTTTCAGAAACCACAGAGTTAGCAAGTGCAAAATTGGTTAAGGCAACTGCTGGGAATGTTGATGATGCTGTGAGAGAGCTTCCTGATGCAAACTTGAGACCTGAGGACCTATGGGCAGTGCATTCAACCATAGCTATTCCCAAGCCCCATAAAATGAATAACCCTTCTTGGAAAGCAATAAAGAAGATACAAGAGGCTGGCGAGCAAATAGGTTTGAAGCATTTCAAACCTATCAGGCCTTTAGGGTCCGGTGACACAGGAAGTGTTCATTTGGTAGAATTGCGTGAAACTGGTGAATTGTTTGCAATGAAAGCAATGGACAAGGAAGTGATGTTAAACCGTAATAAGGTGCATCGAGCTTGTATGGAAAGAGAAATAATGGCAACGTTGGACCATCCTTTCCTTCCAACACTTTATGCATCTTTTCAGACGAAGACACACGTGTGCTTAATTACTGATTTTGCCCCTGGAGGAGAGCTTTTCATGCTCATAGACAGACAACCTATGAAGGTTCTTCGTGAAGATGCTGCTCGATTCTATGTAGCAGAGGTTGTTGTCGCTTTGGAGTATCTTCATTGCCAAGGGATTGTTTACAGAGATCTGAAGCCTGAAAACTTGTTGCTTCAAAGCGACGGGCATTTATTATTGACAGATTTCGACTTATCATATTTGGCATCTTGTAAACCACAGTTAATAAGGTATACAGAGATTCCAGGGAAGAAAAGAAAAATGAAAAATGAACCACCTCCAACATTTGTTGCAGAACCAACAATTGCTTCAAACTCTTTTGTAGGGACAGAAGAATATATAGCACCGGAAATCATTACTGGCACAGGTCATAGTAGCGCTGTTGATTGGTGGGCTCTTGGGATCTTGTTGTATGAACTGCTTTATGGGCACACGCCATTTAGAGGAAAGAATAGGCAAAATACATTTGCGAAAATACTTCACAAGGATCTCACATTTCCCAGTAGCATCCCGGCAAGCTTGGCTGCGAGGCAATTAATACATAGATTGTTGCACAGAGACCCTGCAAATAGATTGGGCTCAAAAAGCGGAGCACATGAAATCAAACAACACCCTTTCTTCCGTGGGATACACTGGCCGCTCGTGCGTTGCATGAGTCCTCCTAAACTTGATGCACCTATCCAACTAATAGGAAAAGATCCTTTAATAGATGGCAAGATCGTGGATTCAAATTGGGATATGTAA___AAGACGTTGGAACCAGACAAAGCTATTTATTACTGGTTTCACAGAGAGTGCAGGTAGTTCTGCATAGGGTTTCAGTCAAATATCCATTGGGCATGTTTTCAGTATGTCCGATGGTGCAAGAACATGAAACCTATCAATGGTTTTCATTCTCAATTGCTTGAGAAAAGTCACATTCTGTGTATTCCAGTTTGATAGATATCTGTAACTATTGGAAGCCTGCAACATGACTGCACCTTCTCCTATTGCCTTTTCTGTTAGCGAGTAATATCAACAGATTCTTTTTGCAGAGTTTATCAGCTTTGGTGGAGAATTTTAATCTTCGTGGCATGAGTGGACCTTGGTGCAACATAATTGTGATTAATTATTATTGTGTATATTTGTATTGGATATGTTTTAATGGAGAGACATCCAATAGTGCAGAGTGAGATTTATTGTTGTTGTAGTATATTAGTATGTGATATGCGTTTATGTAGAGACATTCGATTGTACAGAGTGAAAACATGGATGCATATCTGCAAAGTTTTAG

Fln Alignment:

Contig11002___AIPKPHKMNNPSWKAIKKIQEAGEQIGLKHFKPIRPLGSGDTGSVHLVELRETGELFAMKAMDKEVMLNRNKVHRACMEREIMATLDHPFLPTLYASFQTKTHVCLITDFAPGGELFMLIDRQPMKVLREDAARFYVAEVVVALEYLHCQGIVYRDLKPENLLLQSDGHLLLTDFDLSYLASCKPQLIRYTEIPG------------------------------------------KKRKMKNEPP------PTFVAEPTIA-SNSFVGTEEYIAPEIITGTGHSSAVDWWALGILLYELLYGHTPFRGKNRQNTFAKILHKDLTFPSSIPASLAARQLIHRLLHRDPANRLGSKSGAHEIKQHPFFRGIHWPLVRCMSPPKLDAPIQL
B8LKY3_______________SLNKPHKGNDPRWDAIQAVKVRDGFLGLSHFRLLKRVGSGDIGSVYLAELRGTNCFFAMKVMDKGSLENRNKSLRAQTEREILSCLDHPFLPTLYSHFETDKFSCLVMEFCSGGDLHSFRQQQPWKRFSESASRFYAAEILLALEYLHMMGIVYRDLKPENVLVRGDGHIMLLDFDLSLRCVVSPTLVK-SASPGLDPSRRVPVYCVQPSCIEPSCVTPVCLQPSCFRPRFLPQRSKKIRKPKNEMANQSNLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGAGNRETLEKIAGQALRFPDSPTVSFAARDLIRGLLMKDPQHRLAFKRGATEIKQHPFFDGANWALIRSTTPPQIPKPIDL

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
352	12	87			0.992554
354	85		14		0.993533
355		85	14		0.993533
585	16		83		0.994512
634			12	87	0.992554
649	11	88			0.923564
651		88	11		0.923564
652	88			11	0.923564
662	55			44	1.0
704	10			90	0.90298
705	40	50		10	1.0
843	12		87		0.992554
844		12	87		0.992554
845	12		87		0.992554
935	85	14			0.993533
936	14		85		0.993533
937		85		14	0.993533
972	25	75			0.996473
1466	25		75		0.996473
1470	20	80			0.995493
1472	80		20		0.995493
1473			20	80	0.995493
1492		20		80	0.995493
1528		75		25	0.996473
1558		85		14	0.993533
1643	16		83		0.994512
1645	16		83		0.994512
1647			83	16	0.994512
1764	25	75			0.996473
1788	25	75			0.996473
1791	75			25	0.996473
1844	25	75			1.0
1920	12		87		0.992554
1922	12			87	0.992554
1942	85		14		0.993533
1978		14		85	0.993533
2059	42		57		1.0
2386			66	33	0.997452
2387	66			33	0.997452
2523	87		12		0.992554
2524	87		12		0.992554
2525	87		12		0.992554
2574	55	11	33		1.0
2614	88	11			0.923564
2638	22			77	0.999999
2737	64		35		1.0
2827	12		87		0.992554
2842		71	28		1.0
2843	71	28			1.0
3058	33			66	0.997452
3059	33		66		0.997452
3060	33			66	0.997452
3061	66		33		0.997452
3062	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain