SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10998

Length: 1698 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10998

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	0.0	83%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	83%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	3.985e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.11.3-	-	2.825e-11	-

Source	Gene names
Sma3	AT1G34210; AT1G60800; AT2G13790; AT2G13800; AT2G23950; AT3G24550; AT4G30520; AT4g30520; AT5G10290; AT5G16000; AT5G45780; AT5G63710; AT5G65240; At1g34210; At1g52290; At1g60800; At1g70460; At2g13780; At2g13790; At2g13800; At2g23950; At3g25560; At4g30520; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G71830.1	SERK1, ATSERK1 somatic embryogenesis receptor-like kinase 1 chr1:27018575-27021842 FORWARD LENGTH=625	81%
RefSeq	Arabidopsis thaliana	NP_177328.1	somatic embryogenesis receptor kinase 1 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002327216.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: your sequence is shorter than subject: 390 - 630

Fln protein: TAALFGGVAAGAALLFAIFAIAFQLLRRKKPHESYFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSQKNILGKGAFGKVYKGRLADGSLVAVKRLKDERSSAGELQFQTEVEMISMAVHRNLLRLRGFCMSPTERLLVYPYMSNGSVASCLRERQTDQEPLDWPKRRCIALGSARGLSYLHDHCDPKIIHRDVKAANVLLDDVFEAVVGDFGLAKLMDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWQKVEVMRNTDQEHVHRHPDWISESASNVHPVELSGPR*

Protein Length: 391

Fln nts: ACAGCAGCACTATTTGGTGGGGTAGCAGCAGGTGCTGCACTTTTATTTGCGATTTTTGCCATTGCCTTTCAATTGTTGCGGCGCAAGAAGCCACATGAATCTTATTTTGATGTGCCAGCTGAAGAGGATCCAGAGGTTCACTTAGGGCAGCTTAAAAGGTTCTCATTACGGGAATTACAGGTTGCCACTGATGGGTTTAGCCAAAAGAACATACTAGGGAAAGGTGCTTTTGGGAAGGTATACAAAGGGCGCCTTGCTGATGGTTCATTGGTGGCTGTGAAACGCTTGAAGGATGAGCGTAGTTCAGCTGGAGAGTTGCAGTTTCAAACAGAAGTGGAGATGATCAGTATGGCAGTACACAGGAACCTCCTTCGGCTTCGTGGGTTCTGCATGTCACCAACTGAACGTCTACTTGTTTATCCTTACATGTCTAACGGGAGTGTTGCATCTTGTCTACGAGAACGACAGACAGATCAAGAACCACTAGATTGGCCTAAACGCAGGTGCATAGCACTGGGTTCAGCAAGAGGCCTTTCCTATCTACATGATCATTGTGATCCTAAGATTATTCACCGGGATGTGAAGGCTGCTAACGTCCTATTGGATGATGTGTTTGAAGCTGTGGTGGGAGATTTTGGTTTAGCCAAACTTATGGATTACAAGGATACTCATGTGACTACAAATGTCTGTGGTACAATTGGACACATAGCACCGGAATACCTTTCTACTGGAAAGTCTTCAGAAAAGACTGATGTATTTGCATATGGGATTATGTTGCTGGAAATTATCACAGGACAGAGGGCATTTGACCTTGCACGATTAGCAAGTGACGATGATATCATGCTTCTTGACTGGGTTAAAGGGATGCTAAGAGAGAGGAGGCTGGATAGGCTGGTTGATCCAGAACTCCAGAACAATTATGAGGAAACAGAGGTGGAGCAACTTATTCAAGTTGCCTTACTTTGCACCCAAAATTCACCAATGGAAAGACCAAAGATGGCCGATGTGGTACGGATGCTAGAAGGTGATGGCTTAGCTGAAAGATGGGATGAATGGCAAAAGGTGGAGGTAATGCGTAACACTGATCAGGAGCATGTACATCGACATCCAGACTGGATTTCTGAGTCAGCATCTAATGTTCATCCAGTTGAATTGTCTGGTCCAAGATAA___GAAGTCAAAAGTATATTCAGTGTGGCCAATAATTTATTTTTCTTCGACTTGTAGTGATTATTACATAGTAAGTCCCACTGGTGGTCACAATATTATCTTCAAGCATTTCATTTTATTGGATGTCCCACCGCAGTGATGCTTGGTGTATCCTTGGTTTGCCTCAAAAATATATGTATGGGAACCATGGGTTTTGGATCACTGAGGATCAAAATTGACCTTGTAATGTGTTTAAGGATGAATCTAGTATACTTTTTATTGTAAAAGTTCCAGTTCGTCTGTAAAGAAGCCGTTCTCTTTGGACACGAAGCTCCACAGATCACTGCCATTGAAAACACTCTCTTTGTAATGTGGATTCTAATCTCCAAATGCTTGCCACTTATTGTATCCAGAATTATTTGAAAGGCTACAGCAAGTTAGGATTCTATTAATCTCGAGTTGATTTTCAAGCACACAAACTGGAATCCTTACTAGTTTGCATGTCCCAGATATCTGAAGTAAAGGAAGAAGTGCTCAACTGCAAGTTATCTC

Fln Alignment:

Contig10998___RRKKPHESYFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSQKNILGKGAFGKVYKGRLADGSLVAVKRLKDERSSAGELQFQTEVEMISMAVHRNLLRLRGFCMSPTERLLVYPYMSNGSVASCLRERQTDQEPLDWPKRRCIALGSARGLSYLHDHCDPKIIHRDVKAANVLLDDVFEAVVGDFGLAKLMDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWQKVEVMRNTDQEHV-HRHPDWISESASNVHPVELSGPR
D1MEH6_______________RRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWIVDSTDNLHAVELSGPR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
57	33			66	0.997452
58	33			66	0.997452
201		20		80	0.995493
203			80	20	0.995493
204		83		16	0.994512
527		85		14	0.993533
581	87			12	0.992554
598	10		90		0.90298
599	10			90	0.90298
600		90		10	0.90298
601		90	10		0.90298
900		25		75	1.0
1070	85		14		0.993533
1086		14		85	0.993533
1195			83	16	0.994512
1423		12		87	0.999964
1566	12			87	0.992554
1568	12			87	0.992554
1569	12			87	0.992554
1570	12			87	0.992554
1576		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain