SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10990

Length: 639 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene10990 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Gene names
Sma3	AT5G58960; At5g58960; At5g58960/k19m22_160; GIL1; GSVIVT00024174001; POPTRDRAFT_650190; RCOM_0731060;

Source	GOs	Term	Type	e value	Identity
Sma3	response to red or far red light	GO:0009639	Biological Process	0.0	-
Sma3	negative gravitropism	GO:0009959	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF641, plant	IPR006943	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58960.1	GIL1 Plant protein of unknown function (DUF641) chr5:23805799-23808360 FORWARD LENGTH=559	4.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_001032100.1	uncharacterized protein [Arabidopsis thaliana]	4.0e-21	52%
RefSeq	Populus trichocarpa	XP_002313401.1	predicted protein [Populus trichocarpa]	3.0e-23	53%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
381	14		85		0.993533
413	62	37			1.0
416		62	37		1.0
418		62		37	1.0
424	62	37			1.0
554	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain