SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10987

Length: 2541 nt

UniGene Fasta

>sp_v3.0_unigene10987
GAACATATTTCTGCGACCATTTCGTAGACAGATTCGTAAACAGTTGAATTGCGGCTGTCGGAAAGGAAAGAAATAAATAAAGCTCACACGATTTTTTCTTCAGGAGAAGTAACTGGATGCACAGATCCGATTAGAGGCGATGAGAAACATATGCATAAATGCATAAGAAATGCTTGCAAAGAATCGACTCTCGGGCAGCAGTGCGCACAGCTCTCCGTCTCCGCCATCATCGCCTCGCCGGTCGTCGCCGAGGTATGGCGGCAGACATGGCCGGACGAAGAGCGGGCGCATGCATGGAGTCGGCCCTCCGCTGCCGCCCCGGACATTTTTGCAAAAAATTGTGTGGCTTCTGCTCTCTGTGCTGTTGAGGCGCCATGGACTTTTCTTGTTTGCCCCGCTCATATATATTTCAGGGATGCTGCTCTACATGGGAACCATGTCGTTCGATATGAGCCGCGTCGTTAAACATCGCCCGGCTCCCGGTTCCGTCTACCGAAGCCCGCAAGTGTTCGAGAACCTCTGGCCCTCAATGCAAGAGGACAACGCCACGTACGATGGGCTAATGGCCGCATGGCAGCACCCGAGAGGAAGTGAAGAATGGAGACCTTGTATTAGTCGGGCAATGAATGAAGGAGGGTTACCTGATTCAAATGGTTATATATTTATTGAAGCAAATGGTGGCTTGAATCAGCAGCGTGTATCAATTTGCAATGCAGTAGCTGTGGCAGGGCTTTTGAATGCAACCCTTGTCATTCCAAATTTCCATTTCCATAGCATTTGGCGGGATCCTAGTAAGTTTAAGGACATATATGACGAAGATCACTTTATTGATATGCTTAGAAATGATGTGAGGGTTGTTAGAAAGCTGCCCGAAGTCATAATGGAAAAGTTTGACAACAATATGAGCAATATTTTCAACTTCAGGATTAAAGCTTGGTCTCCTGTCAGTTACTATGAAGAAAAAGTTCTCCCTAAACTACTTGAGGCTGGTGTGATACGGATTTCTCCATTTGCCAATCGATTGTCACAAGAGGTTCCACCCCCAATTCAGCGCCTCAGATGTTTGGCTAACTATGAAGCATTACGATTTGCTGCTCCCATTTCTAAACTTGCAGAGGAGTTAGTAGAACGCATGATTAAGCACAGCTCCACCACTGGTGGAAAATATATTGCTGTTCATCTTCGTTTTGAAGAGGACATGGTAGCTTTTTCTTGCTGCATATTTGATGGTGGTGAGGAAGAAAAGAGGGAAATGGATGCTGCTCGAGAAAGGGGTTGGAGGGGCAAGTTCAACAGAACAGGTCGTATTATTAGACCTGGGGCTATCAGGATGAATGGAAAATGCCCTCTAACTCCCTTGGAGGTTGGTATTATGCTGAGAGGAATGGGATTTGATAACAATACCTCAATTTACTTAGCAGCTGGGAAAATATACAAGGCAGACAAGAATATGTTTCCCCTTAGGCAAATGTTTCCTTTGTTGCAAACGAAAGAGATGCTTTCGATGCCAGAGGAACTTGCTCCTTTTAAGGATTATTCCTCAAGGATGGCTGCATTGGACTACACTGTTTGCCTACACAGTGAAGTTTTTGTTACAACTCAAGGGGGAAACTTCCCTCATTTTTTGATGGGGCATAGGAGATACTTATATGGAGGACACAGTAAGACAATCAAGCCCGACAAACGCAAGTTAGCACTGCTGCTAGACAATCCAAATATAAGATGGGAAACTTTCAAACAACAAATGCAAGCAATGCGACGTCACAGTGATGTTAAAGGAATTGAAATTAGAAAGGTCAATGCTTCAGTATATACCTTTCCTACCCCAGATTGCATGTGCCGTGAGAAAAGTTTCGGTTTGAAGGTCTGACTACTATGAACGAAGTATAGTCAAGAAAGGGAGGATTTTTCTTTCTTTCTTTGAATTTACCAATGATGCAGCCATGCGGCTTTAAATCTATTGTTTAGGTGCTTGAGACATTCTTTATCAACACAATCTTGCTGCATTGTCCTCAATTTTTTTTATCCTGGAGAAAAGGATGGATTTATTGATCAGTTACTTCAAGATTTATTGCTGAAAATTCATTGTAGAGCACATTGGCTCTATACAGTTTCCACTTGAGCTTTGATGAGCTATTTGGTAATGGCATTGGAGAAATCTTATCTACGAGCATGCGGGTATCTATCACGGGGCCAGTTTATGTTTCCATAATCAGAAGAATCCCAAGAAGATCCCAGATCAAAGCTGCAAGGAAAATATTAAATAAGCAGAAGCTTGATTGTATAAAATCTGTATACTTTTGTCAGGGAGGTTGTATCACGGCTGATTATTTGGTAACCATTTCAGGGAATGAGTGTTGCCCCATTTTGTCCCGCGGGTTTGGGAGATTGTATCATTTTGTGTTTATGGCTTTGTAAGAATTTTCAGAAGCATGCACGATGGGGAACTTAAGATTAAAGATCCTTGGTGACTGCATGATTATTTCTTTTCTTATTTTCATTTGCAAAAGTCTCTATTCATTTCTGCCTTGGCTCTTTATA

Ace file of the UniGene sp_v3.0_unigene10987

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] gb\|AAC67324.1\| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb\|AAM13108.1\| similar to axi 1 protein [Arabidopsis thaliana] gb\|AAM91218.1\| similar to axi 1 protein [Arabid	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%
Sma3	Growth regulator like protein	-	-	7.177e-15	-

Source	Gene names
Sma3	AT4g16650; At1g14020; At1g29200; At1g35510; At1g38065; At1g38131; At2g01480; At2g03280; At3g26370; At4g16650; At5g65470; B1103G11.21; F12K8.19; F7A19.11; GSVIVT00015333001; GSVIVT00015568001; GSVIVT00030505001; GSVIVT00036211001; GSVIVT00038663001; H0211B

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01480.1	O-fucosyltransferase family protein chr2:216980-220341 FORWARD LENGTH=567	68%
RefSeq	Arabidopsis thaliana	NP_178257.1	O-fucosyltransferase family protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002315879.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HFH6

Fln msg:

Fln protein: MLAKNRLSGSSAHSSPSPPSSPRRSSPRYGGRHGRTKSGRMHGVGPPLPPRTFLQKIVWLLLSVLLRRHGLFLFAPLIYISGMLLYMGTMSFDMSRVVKHRPAPGSVYRSPQVFENLWPSMQEDNATYDGLMAAWQHPRGSEEWRPCISRAMNEGGLPDSNGYIFIEANGGLNQQRVSICNAVAVAGLLNATLVIPNFHFHSIWRDPSKFKDIYDEDHFIDMLRNDVRVVRKLPEVIMEKFDNNMSNIFNFRIKAWSPVSYYEEKVLPKLLEAGVIRISPFANRLSQEVPPPIQRLRCLANYEALRFAAPISKLAEELVERMIKHSSTTGGKYIAVHLRFEEDMVAFSCCIFDGGEEEKREMDAARERGWRGKFNRTGRIIRPGAIRMNGKCPLTPLEVGIMLRGMGFDNNTSIYLAAGKIYKADKNMFPLRQMFPLLQTKEMLSMPEELAPFKDYSSRMAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIKPDKRKLALLLDNPNIRWETFKQQMQAMRRHSDVKGIEIRKVNASVYTFPTPDCMCREKSFGLKV*

Protein Length: 568

Fln nts: GAACATATTTCTGCGACCATTTCGTAGACAGATTCGTAAACAGTTGAATTGCGGCTGTCGGAAAGGAAAGAAATAAATAAAGCTCACACGATTTTTTCTTCAGGAGAAGTAACTGGATGCACAGATCCGATTAGAGGCGATGAGAAACATATGCATAAATGCATAAGAA_-_ATGCTTGCAAAGAATCGACTCTCGGGCAGCAGTGCGCACAGCTCTCCGTCTCCGCCATCATCGCCTCGCCGGTCGTCGCCGAGGTATGGCGGCAGACATGGCCGGACGAAGAGCGGGCGCATGCATGGAGTCGGCCCTCCGCTGCCGCCCCGGACATTTTTGCAAAAAATTGTGTGGCTTCTGCTCTCTGTGCTGTTGAGGCGCCATGGACTTTTCTTGTTTGCCCCGCTCATATATATTTCAGGGATGCTGCTCTACATGGGAACCATGTCGTTCGATATGAGCCGCGTCGTTAAACATCGCCCGGCTCCCGGTTCCGTCTACCGAAGCCCGCAAGTGTTCGAGAACCTCTGGCCCTCAATGCAAGAGGACAACGCCACGTACGATGGGCTAATGGCCGCATGGCAGCACCCGAGAGGAAGTGAAGAATGGAGACCTTGTATTAGTCGGGCAATGAATGAAGGAGGGTTACCTGATTCAAATGGTTATATATTTATTGAAGCAAATGGTGGCTTGAATCAGCAGCGTGTATCAATTTGCAATGCAGTAGCTGTGGCAGGGCTTTTGAATGCAACCCTTGTCATTCCAAATTTCCATTTCCATAGCATTTGGCGGGATCCTAGTAAGTTTAAGGACATATATGACGAAGATCACTTTATTGATATGCTTAGAAATGATGTGAGGGTTGTTAGAAAGCTGCCCGAAGTCATAATGGAAAAGTTTGACAACAATATGAGCAATATTTTCAACTTCAGGATTAAAGCTTGGTCTCCTGTCAGTTACTATGAAGAAAAAGTTCTCCCTAAACTACTTGAGGCTGGTGTGATACGGATTTCTCCATTTGCCAATCGATTGTCACAAGAGGTTCCACCCCCAATTCAGCGCCTCAGATGTTTGGCTAACTATGAAGCATTACGATTTGCTGCTCCCATTTCTAAACTTGCAGAGGAGTTAGTAGAACGCATGATTAAGCACAGCTCCACCACTGGTGGAAAATATATTGCTGTTCATCTTCGTTTTGAAGAGGACATGGTAGCTTTTTCTTGCTGCATATTTGATGGTGGTGAGGAAGAAAAGAGGGAAATGGATGCTGCTCGAGAAAGGGGTTGGAGGGGCAAGTTCAACAGAACAGGTCGTATTATTAGACCTGGGGCTATCAGGATGAATGGAAAATGCCCTCTAACTCCCTTGGAGGTTGGTATTATGCTGAGAGGAATGGGATTTGATAACAATACCTCAATTTACTTAGCAGCTGGGAAAATATACAAGGCAGACAAGAATATGTTTCCCCTTAGGCAAATGTTTCCTTTGTTGCAAACGAAAGAGATGCTTTCGATGCCAGAGGAACTTGCTCCTTTTAAGGATTATTCCTCAAGGATGGCTGCATTGGACTACACTGTTTGCCTACACAGTGAAGTTTTTGTTACAACTCAAGGGGGAAACTTCCCTCATTTTTTGATGGGGCATAGGAGATACTTATATGGAGGACACAGTAAGACAATCAAGCCCGACAAACGCAAGTTAGCACTGCTGCTAGACAATCCAAATATAAGATGGGAAACTTTCAAACAACAAATGCAAGCAATGCGACGTCACAGTGATGTTAAAGGAATTGAAATTAGAAAGGTCAATGCTTCAGTATATACCTTTCCTACCCCAGATTGCATGTGCCGTGAGAAAAGTTTCGGTTTGAAGGTCTGA___CTACTATGAACGAAGTATAGTCAAGAAAGGGAGGATTTTTCTTTCTTTCTTTGAATTTACCAATGATGCAGCCATGCGGCTTTAAATCTATTGTTTAGGTGCTTGAGACATTCTTTATCAACACAATCTTGCTGCATTGTCCTCAATTTTTTTTATCCTGGAGAAAAGGATGGATTTATTGATCAGTTACTTCAAGATTTATTGCTGAAAATTCATTGTAGAGCACATTGGCTCTATACAGTTTCCACTTGAGCTTTGATGAGCTATTTGGTAATGGCATTGGAGAAATCTTATCTACGAGCATGCGGGTATCTATCACGGGGCCAGTTTATGTTTCCATAATCAGAAGAATCCCAAGAAGATCCCAGATCAAAGCTGCAAGGAAAATATTAAATAAGCAGAAGCTTGATTGTATAAAATCTGTATACTTTTGTCAGGGAGGTTGTATCACGGCTGATTATTTGGTAACCATTTCAGGGAATGAGTGTTGCCCCATTTTGTCCCGCGGGTTTGGGAGATTGTATCATTTTGTGTTTATGGCTTTGTAAGAATTTTCAGAAGCATGCACGATGGGGAACTTAAGATTAAAGATCCTTGGTGACTGCATGATTATTTCTTTTCTTATTTTCATTTGCAAAAGTCTCTATTCATTTCTGCCTTGGCTCTTTATA

Fln Alignment:

Contig10987___PPRTFXXXXXXXXXXXXXXXXXXXXFAPLIYISGMLLYMGTMSFDMSRVVKHRPAPGSVYRSPQVFENLWPSMQEDNATYD--GLMAAWQHPRGSEEWRPCISRAMNEGGLPDSNGYIFIEANGGLNQQRVSICNAVAVAGLLNATLVIPNFHFHSIWRDPSKFKDIYDEDHFIDMLRNDVRVVRKLPEVIMEKFDNNMSNIFNFRIKAWSPVSYYEEKVLPKLLEAGVIRISPFANRLSQEVPPPIQRLRCLANYEALRFAAPISKLAEELVERMIKHSSTTGGKYIAVHLRFEEDMVAFSCCIFDGGEEEKREMDAARERGWRGKFNRTGRIIRPGAIRMNGKCPLTPLEVGIMLRGMGFDNNTSIYLAAGKIYKADKNMFPLRQMFPLLQTKEMLSMPEELAPFKDYSSRMAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIKPDKRKLALLLDNPNIRWETFKQQMQAMRRHSDVKGIEIRKVNASVYTFPTPDCMCR
F6HFH6_______________PGRTFAQRLAWLILSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVVPVIKHRPAPGSVYRSPQVYAKLRPEMDSDNSTSDTVSISTVWKHSYKSGEWQPCVNRS--SGGLPESNGYIYVEANGGLNQQRTSIGNAVAVAGYLNATLIIPHFHYHSIWRDPSKFKDIYDEDYFITTLENDVQVVNTIPEYIMERFDHNMSNVYNFRIKAWSSIQYYRDAVLPKLLEEKLIRISPFANRLSFDAPPAVQRLRCLANYEALRFSSPILTLGESLVARMKKLSANNSGRYISVHLRFEEDMVAFSCCVFDGGEEEIQDMNAARERGWRGKFTKPGRVIRPGAIRINGKCPLTPLEVGLMLRGMGFDKSTSIYLASGKIYKSEKTMAPLFEMFPLLQTKEMLASAEELAPFKNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTVRPDKRKLALLFDNPNIGWKSFKRQMLNMRAHSDAKGFELKRPNDSIYTFPCPDCMCR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
828	14			85	0.993533
845	88		11		0.923564
898	87		12		0.992554
906	12		87		0.992554
2034	20	80			0.995493
2075	16			83	0.994512
2077	83		16		0.994512
2078			16	83	0.994512
2079			16	83	0.994512
2382		58		41	1.0
2414		16		83	0.999991
2439	55		44		1.0
2477	66		33		1.0
2489		11		88	0.923564
2500		14		85	0.993533
2518	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1908	1922	TTTC TTTC TTTC TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain