SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10960

Length: 1558 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome-associated serine/threonine protein phosphatase 3 n=13 Tax=Embryophyta RepID=FYPP3_ARATH	-	-	92%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	PsFyPP	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	FYPP;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19980.1	ATFYPP3, EMB2736, STPP, FYPP3 flower-specific, phytochrome-associated protein phosphatase 3 chr3:6962008-6964761 FORWARD LENGTH=303	92%
RefSeq	Arabidopsis thaliana	NP_188632.1	phytochrome-associated serine/threonine protein phosphatase 3 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002310919.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9W9

Fln msg:

Fln protein: MDLDEWIQKVKDGQHLMEDQLKLLCEYVKEILVEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDRGYNSLEVFTILLLLKARYPASITLLRGNHESRQITQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGRVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEEIETWAVSPRGAGWLFGSRVTSEFNHINNLELVCRAHQLVQEGLKYMFQDRSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENSAMMGPRAGVPYFL*

Protein Length: 305

Fln nts: ATGGGGATCTCGTCCCCACCCTGGCTATCACGGTCAATATTTTGTGGGTGCGTGCATTGGAAGTTATAAGTGGCGAAGATATGTAATACTAATATCTCAATAGTTCCCCTGTTTCGGAAAAGTTTCGTGACTCCGAAACGAAATCCACGGATTCCACAGGAGCTGCGCAGCTTTCCCGTTCTTGGTATATACTTTCTAGATCTGTTGTCGAGCTGTGGACGTAAATTCACAGGGCTATCTCCTCCACAACGACAGCCTTACAGCAGAGGAGAGCCGTTGGGTAATAAGAAGCGATCGATCAAAAGGGAGTAGGAGG_-_ATGGATCTGGATGAATGGATTCAAAAGGTTAAGGATGGACAACATCTTATGGAAGATCAGCTCAAACTTCTTTGTGAATATGTCAAGGAGATACTTGTGGAGGAATCAAATGTGCAGCCTGTCAATAGCCCAGTGACTGTTTGTGGGGACATCCATGGTCAGTTCCACGATCTGATGAAACTTTTCCAGACAGGGGGTCATGTCCCAGACACCAACTATATTTTTATGGGGGATTTTGTGGATCGAGGATACAACAGCCTTGAAGTATTCACAATTCTTTTGTTATTAAAAGCAAGATATCCAGCAAGTATAACTCTCCTGCGAGGCAATCATGAAAGCAGGCAAATAACCCAGGTGTATGGATTTTATGATGAGTGCCAGCGTAAATATGGAAATGCAAATGCATGGCGTTATTGCACAGATGTGTTTGATTACCTTACACTCTCAGCAATCATTGATGGAAGGGTTCTTTGCGTACACGGAGGGCTCTCTCCTGATATACGGACAATTGATCAGATTAGAGTCATTGAGAGGAACTGTGAAATACCGCATGAAGGGCCTTTCTGTGATTTAATGTGGAGCGACCCAGAAGAAATTGAGACTTGGGCAGTTAGTCCTCGTGGTGCTGGGTGGCTTTTTGGATCTCGTGTCACTTCTGAATTCAATCATATCAATAACTTGGAACTTGTGTGCCGAGCACATCAACTGGTGCAAGAAGGTCTTAAATATATGTTTCAAGATAGAAGTTTAGTAACGGTTTGGTCTGCACCGAATTATTGTTACCGGTGTGGGAATGTAGCTTCAATTTTGAGTTTTAATGAAAACATGGAAAGGGATGTAAAATTCTTCACAGAAACAGAGGAGAATAGTGCTATGATGGGCCCAAGGGCTGGGGTTCCATATTTTTTGTAG___ATTTAATCTGTATAAACATTCATTGGCTGTGTCTTTGTGTAACTTGTAAATTAGATAGGCTGAGACACTCCAGTCTTATTTTTGGAATAAATGCCACAAATCAATGAAATATTTGAGTAAATTGCCAGCTAGTAATTTATCCTGTACTTCAGCGGAGTTGTAATTTACAATATCATATCAGTCAAAGTCATTACATCATTGTTTTTCTCTCTAGTGTGGAGCAAATGCTAAGGCATTTGTCCGTGTTTCCTCTATGATAGTTTGTTTTAATCAATTTCACAGCATTTACTTTTGACTGTTTTGTTGAAAATTGCATTTTCTCAGCAGTCC

Fln Alignment:

Contig10960___MDLDEWIQKVKDGQHLMEDQLKLLCEYVKEILVEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDRGYNSLEVFTILLLLKARYPASITLLRGNHESRQITQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGRVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEEIETWAVSPRGAGWLFGSRVTSEFNHINNLELVCRAHQLVQEGLKYMFQDRSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENSAMMGPRAGVPYFL
D5A9W9_______________MELDLWLEKVRGGENLTEDELKLLCDYVKEILVEESNVQPVHSPVTVCGDIHGQFHDLMKLFQTGGQVPDTNYIFMGDFVDRGYNSIEVFTILLLLKARYPAHITLLRGNHESRQITQVYGFYDECQRKYGNANAWRFCTDVFDYLTLSAIIDRQVLCVHGGLSPDIRAIDQIRVIDRHCEIPHEGPFCDLMWSDPEDIDTWAVSPRGAGWLFGCRVTSEFNHINDLELVCRAHQLVQEGLKYMFEDKSLVTVWSAPNYCYRCGNVASILSFNENMERDVKFFTETEENNSMMGPRTGGAYFL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1344	12		87		0.992554
1353			87	12	0.992554
1357	12		87		0.992554
1365			10	90	0.90298
1367			10	90	0.90298
1373			90	10	0.90298
1374			10	90	0.90298
1375	90		10		0.90298
1381		10	90		0.90298
1382		88		11	0.923564
1383		11	88		0.923564
1384	11		88		0.923564
1422	85		14		0.993533
1425		14		85	0.993533
1447	20		80		0.995493
1448		20	80		0.995493
1450			80	20	0.995493
1451		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain