SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10955

Length: 1793 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10955

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding motif protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ9_CUCME	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At1g60200; At1g60210; GSVIVT00028834001; MICPUCDRAFT_57766; OsI_29243; OsJ_27321; P0433E10.19; PHYPADRAFT_212644; PHYPADRAFT_36811; POPTRDRAFT_822012; POPTRDRAFT_874082; RCOM_0527800; T13D8.9;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Splicing factor PWI	IPR002483	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein chr1:22200882-22205241 REVERSE LENGTH=899	76%
RefSeq	Arabidopsis thaliana	NP_176226.3	RNA-binding protein 25 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002311588.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT8

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 129 - 222

Fln protein: YIIRFVDFRALENKKLLDAKQLIDTIPKTKEALLADNIDWAIYDKYDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT*

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGCCCGTGCTGTTGTCGTTGATTGTCATTTAGATTCGGCGAGCAGAGGAATTTGCTCTCTTATTCTTTTTCGACAACAGCTACCGGCAGCAGGCAATATGGGCCGATTTAATACACTTCTCTTCTTGGTTTTCGCTTTTGGATTGATGATCTCAGCCTCTATGGCGAAGGCTCCCATCGCTGCAGCACCCAAGCAGTCGCCGACTGAATCTCCCGAAGCAGCTCCACCGGCCTCCGCCCCTTCTCAAGCTCCACCAGCGAGCACCCCTTCTCAAGGTGCCCCGACGCCAGGCTCGCTCTCAACACCCAGCAATCCCAATAAACCCTCCGGCCTGGCTGCAGGCCCCGGCCCCGCTTTGGCACCGGCCCAAGGGGCGGCGACGACCGTCAGATTGGAGAGTATTATGCCAATATTTGGAGCCGCCGCCTTGGTTGGAGGAGCCGCCTTTCTTTTTTAAGTTAGATGCATCATGCATTCTCTGCGTCTTGTGTGTTCGTCTATGGTATGTTTCTTTTAATTAGTTGGGATCTGAAACATCCAATAATTAATGTTTGAAGGAGCAAATCATGTATGCTATGTACGCTTCATTTGTGTTTTTATCTTCACTAATTTGTTCTGATCTGAAACCCCTAAGGAAAAAATCAATCGTGGGTTCTTGGATCACATCATGTGATGATGAAAATCATTATTACTTTCAGAAGTACTGCTGCTGCAGAGCTCAGATTATATTATTGTTATTATTCCTTTTCTGGTTCTAGCATTAGTTTGATGGACTGGATTGGCACAATAGCCATTCCAATTTGGATGCGTAATTTTAATATATAATAAGATTCGTGGATTTTCGGGCACTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATTGATACCATTCCCAAGACAAAAGAGGCTCTACTTGCTGACAACATTGACTGGGCCATATATGACAAGTATGATCTGCATGAGAGAATGCGACCATGGATCTCAAAGAAAATAACCGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTAGTCTCCAAAACCAAGAAGCATGTGGCTGCAGCCCATATGTTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTTGTCCTAAAGATGTGGAGGATGCTGATTTTTGAAATCAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGACCTGA___CGGATTTCAGTTAGTTTTCTGTAAGTTAATTTGATTGTGTTTTTATTTTGGATAGATTCAATTTGACTGTTTGCCAGGTTTCTTATTTGACTGAAAAATTATAAATGAATGTGAGCATTACATCTTTTTGATCACAGATTGAATTCCTCATGATTTGGCCGTTAATCTTATAGCAGACATTGAGGTATAGATGCTGTCAATTCCACAGTTCCCTTGGTATTTACTATTTTCTGAGGCTACTTGAGGGCTTTTGCTGACAATATTTTACTTAAATGCTTCATATGTTTGTAACCAAGCTGGTAGCATTAGGCATTATGCCTAAAGTTATTCGACTCCAATCTTTCCCCTTAATGTGGAGTGAAAAGGGCAATGTAAAGCAAGTGTATACTTCATTTTCCATTCTTTTTTAGTAAACAGGATATTAACCATAAATAACGGGAAGTCTTGAATATTCAGAGATGGTGCTTCGAGATCAGATTGCTGCTTACTCCATTGTGTCTGTGCATTCTCTATGCTGCTGTGTTGGGTTTTGGTAAGGTTTTGTTGTCTACTATAAAA

Fln Alignment:

Contig10955___RALENKKLLDAKQLIDTIPKTKEALLADNIDWAIYDKYDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT
D5ACT8_______________KALENKKLLDAKQLIDTIPKTKEALFAYNIDWAIYDKHDLHERMRPWISKKITEFLGEEETTLVDFVVSKTKKHVAAAHMLELLESILDEEAEMFVLKMWRMLIFEIKKVETGLASKAKT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
43		33		66	0.997452
44	33			66	0.997452
46			33	66	0.997452
148	33		66		0.997452
309	88	11			0.923564
310			88	11	0.923564
311		11	88		0.923564
493			83	16	0.994512
1380		14		85	0.999981
1496		66		33	1.0
1525		11		88	0.923564
1593		29		70	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain