SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10913

Length: 1305 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10913

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG0657 Esterase/lipase	-	-	4.0e-11	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Hsr203J	-	-	5.105e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxylesterase.	EC:3.1.1.1	-	6.286e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	6.286e-09	%
Sma3	Drug metabolism - other enzymes	00983	6.286e-09	%
Sma3	Metabolic pathways	01100	6.286e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	6.286e-09	%

Source	Gene names
Sma3	CXE11; CXE12; GSVIVT00002044001; GSVIVT00023284001; GSVIVT00023302001; HSR203J-Cc; LOC_Os11g04350; LOC_Os11g04360; LOC_Os12g04140; LOC_Os12g04150; Os05g0410200; Os11g0138900; Os12g0135500; Os12g0135800; OsI_19949; OsI_35030; OsI_35031; OsI_35033; OsI_3503

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	carboxylesterase activity	GO:0004091	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002297728.1	predicted protein [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP07

Fln msg: Separated hits, possible frame ERROR between 230 and 235,

Fln protein: MVKEVAEEVCGWLRVFSDGTVERKWSGEGxxxVSALTVQVPPSGDTFVEGVATRDVEVNNATGVWVRIYLPQQLPRENQRLGVVVHLHGGVFCTSHADWQMYYQFYSRLVKASNVICVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGEIEEPWLSRYADFGRCVLMGDGTGGNLVHDVARRVLATPDADLLRPVRVRGCVSIHPGYVRSERSKSEMEIQPDSALLSQEMVDKFFKLSAPEGIVATRDHPITNPMGPHAPPLKELMFPRTLVAIADRDIISDTQLEYCNAMKSAGHDVEQYISQNVGHCFHLNETAIKYDPNTAEETSKLLHAVDRFIKSCF*

Protein Length: 346

Fln nts: ATGGGGGTGTTTGAAGAGCAGAAATCCTGTAACAGGTCATTGTGGAAATCCTGTAGCAGAGTTTAGTGTGAGCTACAGTCATTGCTGAAATCTTCTAGCAGAGTTTAGTGCGAGGACTCACTTTATTAAAAATATAGAGA_-_ATGGTTAAAGAGGTAGCCGAGGAGGTGTGTGGATGGTTAAGGGTCTTTAGCGACGGCACTGTTGAGAGGAAATGGAGTGGCGAGGGGGAxxxxxxTGTGTCGGCTCTCACCGTGCAGGTGCCTCCTTCGGGCGACACATTCGTGGAGGGAGTGGCCACTAGAGACGTGGAAGTGAACAACGCCACCGGAGTGTGGGTGCGCATATATCTGCCTCAACAGCTGCCACGGGAGAACCAAAGGCTGGGCGTGGTAGTTCATCTCCATGGGGGAGTGTTTTGTACGAGCCACGCAGACTGGCAAATGTATTATCAATTTTACAGTCGCCTAGTAAAGGCGTCCAACGTGATATGTGTTTCGGTGGATTTCAGACTGGCTCCGGAGCATCGCCTCCCTGCAGCCTGCGACGATTCATTCGGGGCTCTTCTGTGGCTCCGTTCTGTTGCCCGAGGAGAGATCGAGGAGCCGTGGCTCAGTCGGTACGCGGATTTCGGGCGATGCGTTCTGATGGGCGACGGCACTGGGGGAAACCTTGTTCACGACGTGGCTCGCCGCGTTCTCGCCACTCCGGACGCCGATTTACTGCGTCCAGTTCGCGTGCGAGGATGTGTTTCTATACATCCTGGCTACGTGAGATCCGAGAGAAGCAAATCGGAGATGGAGATTCAGCCCGATTCTGCGCTTTTGAGTCAGGAAATGGTCGATAAGTTCTTCAAACTGTCAGCGCCAGAGGGTATCGTGGCCACCAGAGATCATCCCATCACCAACCCAATGGGACCTCACGCTCCACCTCTGAAGGAATTGATGTTTCCACGCACGCTGGTGGCCATTGCTGACAGAGACATTATTAGTGACACGCAGCTGGAGTATTGCAATGCCATGAAAAGCGCAGGTCATGACGTGGAGCAATATATATCTCAGAATGTTGGTCACTGTTTCCATCTCAACGAGACTGCCATCAAATATGATCCCAACACTGCAGAGGAAACCTCTAAACTCCTGCACGCCGTAGATCGTTTCATCAAAAGTTGCTTTTAA___CGTTTGTTACAGACTATGTCATATTTTTAGATCAGTTTGCTTTTAGAGTTTCTTACGTTCTAAGTCATTGGACTTCTACTAGGAACTGCAGTTCTCAGTCATTGGACTTGTACCATGAACTGCAGATTTAGA

Fln Alignment:

Contig10913___MVKEVAEEVCGWLRVFSDGTVERKWSGEGExxVSALTVQVPPSGDTFVEGVATRDVEVNNATGVWVRIYLPQQL--PRENQRXXXXXXXXXXXFCTSHADWQMYYQFYSRLVKASNVICVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGEIEEPWLSRYADFGRCVLMGDGTGGNLVHDVARRVLATPDADLLRPVRVRGCVSIHPGYVRSERSKSEMEIQPDSALLSQEMVDKFFKLSAPEGIVATRDHPITNPMGPHAPPLKELMFPRTLVAIADRDIISDTQLEYCNAMKSAGHDVEQYISQNVGHCFHLNETAIKYDPNTAEETSKLLHAVDRFIKSCF
A9NP07_______________MSKEVIDEVSGWLRVFSDGTVERRWSGEDDxxVLALTMPVPPSNDTFVDGVATKDVAVNEETGVWVRIYLPQTALQQHENQRVGMVIHLHGGGFCISHADWQMYYHFYSRLVRASNVICVSVDFRLAPEHRLPAACDDSFGALLWLRSVARGETEEPWLTRYADFNRCILMGDSSGGNLVHEVGLRAQATP-PDLLHPVCVRGGISIHPGYVRSERSQSEKEHPPDSALLTLDMVDKFLKLSAPEGI-STRDHPITNPMGPDAPPLKDLKFPRMLVAIADRDLIRDTELEYCEAMKSAGHDVEVFCSENVGHSFYLNEIAIKYDPNTAKETSRLLQAADRFIKGCF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
32	80		20		0.995493
42	12		87		0.992554
43	12			87	0.992554
44			87	12	0.992554
46	87			12	0.992554
329			42	57	1.0
342	42	57			1.0
364		83		16	0.994512
373		80		20	0.995493
397		60		40	1.0
402		60		40	1.0
723		14		85	0.993533
1020	87		12		0.992554
1060	14		85		0.993533
1062			14	85	0.993533
1176		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain