SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10908

Length: 1379 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyco_transf_29 domain containing protein	-	-	2.0e-15	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%
Sma3	Sialyltransferase-like protein	-	-	7.811e-22	-

Source	Gene names
Sma3	At1g08660; GSVIVT00037948001; LOC_Os11g36420; Os11g0572400; OsI_36547; OsJ_34319; PHYPADRAFT_143894; PHYPADRAFT_155266; POPTRDRAFT_572878; RCOM_1445300; stv2; stv2a; stv2b; stv3; v3;

Source	GOs	Term	Type	Identity
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	sialyltransferase activity	GO:0008373	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 29	IPR001675	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08660.1	MGP2 MALE GAMETOPHYTE DEFECTIVE 2 chr1:2757116-2759677 REVERSE LENGTH=474	69%
RefSeq	Arabidopsis thaliana	NP_850940.1	male gametophyte defective 2 protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002320429.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SVI0

Fln msg: your sequence is shorter than subject: 198 - 478

Fln protein: QGVVLRRGAEGTGMKSIELALSMCDTVDIYGFTVDPGYTEWTRYFSSPRKGHNPLQGRAYYQLLECLGVIRIHSPMREQRKQDWSTVPSRAMINGAHTAVMRLKGFQNKHPWSVGPFSACKFWATASSENGPISGSIDMSPVRRGSNYSKWELLKLVDLRKEAREHYKNMKGVTMYKLDGNKLDDLVCVKHPSQSET*

Protein Length: 199

Fln nts: CCAAGGTGTGGTCCTTCGAAGAGGTGCGGAAGGAACTGGAATGAAATCTATAGAATTAGCACTTTCCATGTGTGATACAGTTGATATATATGGCTTCACTGTAGATCCAGGTTACACAGAATGGACACGCTATTTCTCGAGCCCACGCAAAGGGCATAATCCATTGCAGGGACGAGCCTATTATCAGCTTCTTGAATGCCTTGGGGTCATTAGAATCCATTCACCAATGCGAGAACAGAGAAAACAAGATTGGTCCACTGTTCCTAGCCGAGCAATGATAAATGGGGCTCATACTGCTGTAATGAGGTTAAAAGGTTTCCAAAATAAGCATCCATGGAGTGTTGGACCATTTAGTGCTTGTAAGTTTTGGGCAACGGCATCTTCTGAGAATGGTCCTATTTCAGGTTCAATAGACATGAGTCCTGTGCGTAGGGGCTCTAACTACAGCAAATGGGAGTTATTAAAGTTAGTTGATTTGCGGAAGGAAGCACGTGAACACTACAAAAATATGAAAGGTGTCACGATGTACAAATTAGATGGCAACAAACTGGATGATCTTGTTTGTGTGAAGCATCCTTCACAATCCGAGACTTGA___TATGACTCATACTATGCAAAACAGTTATTGTTCAAGATATCCGACATCTAGATGCAACTAACACAGCTGGTGGAATTCAGGACACCTGAATTGCAAGTATGCACGTGTCTGTTATTTTAGTATGCTCTTCAGCTTCTCCAGAATTTGCGTCTAATGCACACATGATAAGGATTCTGTATCCTTTTTGCGACAGTTGATTTGGCACTAACTGAGGCAAGAATAGAGGTATTCTAAAAGTGGGGTATAGTCAATGCTACATCTGCAGGGTTTACTGGTCAAGTTTAATAGTGAATTGGCACTAGGGTATTCTAGCAAATGCTTATCTCATTGGAGCTAGTCCCTGGGGAAGGCCTCAGCTATTCCAGTAGATCAACCTGGCTGTGAAGCAAGAGGATGTCCCACTGGTGGAAACTCCACGGTCTTGACAAAGTAATACCTGCATTTATATTCTACTTTTTGTTTTATTGAAGTCTGAGGCTTTCATGCTTTTGGCAACGGTTTTCTTTGTTTGAAGCGGGGGTGTTGCAAGCTCTGTTATCCTCTCCTAACTTTGTCCAGATTAGGTGTGGTTGAATGAAAAAATTGTGAAGTATCCATTATTCATATAAATAGTAAACTACAACTCTTTGTAGTCCGGTAAGTATATGCGAAACCTGTTCTTTATGCTCCTAATTGCATTTGCTGTGGTACCACGGGATTAGTATCTGTCAATTAAAATATGTATGTACCCTCACGGTCAATAAAACTTTTCAGATAAACACACTAAAGCATCTTTTTGGAGCAC

Fln Alignment:

Contig10908___QGVVLRRGAEGTGMKSIELALSMCDTVDIYGFTVDPGYTEWTRYFSSPRKGHNPLQGRAYYQLLECLGVIRIHSPMREQRKQDWSTVPSRAMINGAHTAVMRLKGFQNKHPWSVGPFSACKFWATASSEN-GPISGSIDMSPVRRGSNYSKWELLKLVDLRKEAREHYKNMKGVTMYKLDGNKLDDLVCVKH
D7SVI0_______________QGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPSRAMISRAHAAALRLRKGQADQAGDLGQFGNCKVWGNGGPENSGPISGSPDMSDLRRNSNYSKWEAMPFESLRREARDHYFQMEGVSMYKMDGNKLDDLVCVRH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
626			85	14	0.993533
654	11	88			0.923564
656	88		11		0.923564
657	88		11		0.923564
1070	16		83		0.994512
1072			83	16	0.994512
1074		83		16	0.994512
1081	16		83		0.994512
1083	16			83	0.994512
1201	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain