SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10883

Length: 3392 nt

UniGene Fasta

>sp_v3.0_unigene10883
ATGGGGTCTGTGGCCTTGTGCCTTCTGTCTGAAAGTGAAAGGGCACAGAGCCGTTCCAAGTTCACGCTCATAAGCGACGTGTGCCGTGGGGGATTCGATCTCGGGCGGGCAGGGGCCGAGTCACTGGACATATTTTTTAAATGTTTGTTGGAAGGTTTGGTTTTTCGATGTAAGGGATTGGAATTTGGATAGGGAAGACAACTATGTTCTCGGTGCCAGATGGACATGACGGGGATCCCAGTCGTCACAATGGAATTGACTTCTTGAGGTTAACCAGTGAAGGACCTATCTGACGTCAAAGATTACTGCGTTTGACGTGTAAAGCTGAACGCCGTTGGTGGGAGTTGAGTGGGAAGAAGGAAAGGATAATGATTCGAGGGATGAGAGAGATTTCAGGGCTGAAGGCACGCTGGCGCCAGCTATAAATTCTGTGAAGCTGAGAGCCGCAACTGGCATTCTTGTGTGTGCGTCTAACGTGATAAGCTTCCCTCGGAGGACCAAGGTTTTGATGTTCGCCTCCCTTCATTTTGATCTGTTTCTTCGTTTTCATTTTGCGCAAAAGCTCCATTAATCGGTCATTCTTTCGGCGATTTCTTGTTTTCACGGGACGCATTTTCTGTATGTGCGCACACAGCGGCTGCTTTTAAGAAATCTGTAGCATTTCAATATGACAATCACCTCAGGTGTCACACTCGCCGATGGGCAACTATTTGTCCGTCACAAGCGGGTTCTCTCAGGCGTTCCGGAAAATGTGCTGTTGACTTCTGCTTCAGGCATCGGCCACGCAGACGGTGTATTCATCGGAGCTTTGTGTTCGGAGACTAACAGTCGCCATGTCGTTCCTCTTGGCACTCTTGAGAATGTTAGATTCCTGGCTTGTTTCCGCTTCAAACTTTGGTGGATGTCCCAAAAAATGGGAAGTTCGGGAAAGGAAATTCCTATGGAGACTCAATTTTTGCTATTGGAAAACAAGGCTGATGAGGAGGGAGAGGAGACAATATATACTGTTTTCTTGCCTCTTGTGGAGGGTTCCTTCAGGGCATGTTTACAAGGAAACGAAAATGATGCATTGGAGCTCTGCTTAGAGAGTGGGGATCCTGCCGTGGAAGAATTGTCCTTTACACATTCGCTGCTTATTAATGCCGGAACAGACCCTTTTAAAGTGATTACAGATGGAATAAAGTCTGTGGAACTTCACTTGCAGACATTCCGTCACAGAGAGGAGAAAAAGATGCCTGGCATTGTTGACTGGTTTGGATGGTGTACTTGGGATGCCTTTTATACAGCTGTTTCAGCAGAGGGTGTAGAACAGGGGCTAAAGAGCTTGTCAGAAGGAGGCACCCCGCCACGTTTTGTCATCATTGATGATGGCTGGCAATCTGTTGGAACGGATCAGAGACAAGAAGATGCTCCTGAAAAAGAGCTTATAGGGCGCTTGACTCATATAAAAGAGAATCACAAATTCCAGAAGGATGGGAAAGAAGGTGAACAGCAGGAAGACCCAACTTTGGGCATTCAGCATGTAGTTCGAATGGCTAAAGAGAAGCATCATTTAAAGTATGTGTATGTATGGCACGCAATTACAGGCTACTGGGGAGGTGTTAAACCAGGTGTTTCTGGAATGGAGCACTACGACTCTAAAATGAAGTACCCTGTAACTTCACCAGGTGTCTTAAACCAGGAGCCGGGATTGCAAACAGATAATCTCACCACTCAAGGACTTGGTTTGGTGAATCCCAAGAAAGTTTTCCAATTCTACAACGAACTGCACAGTTACCTGGCAGCAGCAGGAATTGATGGCGTCAAAGTTGATGTTCAATGCATTCTCGAGACTCTTGGAGCAGGTCTTGGTGGAAGAGTGGCACTAACAACCCAATACCACAAGGCGTTGGATGCTTCTGTGGCTAGTAATTTCCCTGACAATGGCTGCATTGCATGCATGAGTCACAACACGGATGCACTTTATTGTTCAAGGCAGACGGCAATTGTAAGGGCTTCGGATGATTTCTTCCCAAGGGAGCCTGTATCTCACACCATCCATATTGCCTCAGTTGCTTACAACAGTGTCTTCCTTGGGGAGTTCATGCTACCTGATTGGGATATGTTTCATAGTCTTCATCCAGCTGCAGAATACCATGCCGCTGCACGCGCCATTGGTGGTTGTCCTATATACGTTAGTGATAAACCTGGTCATCACAACTTCGAGTTGTTGAGGAAGCTGGTCCTTCCGGATGGATCCATTTTGCGACCACGATTACCTGGCAGACCTACTTCTGATTGCTTGTTTAATGATCCCAACCGTGATGGAAAGAGTTTGTTGAAAATTTGGAACATGAACAAATACACAGGAGTTTTAGGGGTATTCAATTGCCAGGGAGCTGCTTGGAGCAATATCGACAAGAAAAATGTATTTCATGACAAAAACCCAGATACATTAACTGGAAGTGTTCGAGCTCAAGATGTACATTTGTTGGCAGAGGCCGCAGAAGACGATTGGGATGGTGATTCTGCAATATTTACTCATTCTGGTGAACTTGTGCGTCTTCCAAAACATTCACTTTTACCAGTCACACTCAAAGTTCTAGAGAAAGAAATTTACACAGTCTCACCTATAAAGGGTTTAGGAACAGGAGTTTCCTTTGCTCCGTTGGGTCTCATTGATATGTTCAATGCTGGAGGTGCTATCCATAATTTAGAGTACCAAATTCACCAAGATTCCCAGTTTTCTGAGGCAACCGAGATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAAGCAAAAACGGCTTTCTACCCATCAACAGGCCTACCAAGAGAAAGCCTTAAAATGTAGGATTTTCACTTGTAAACCTTGACGAGGAACCGAAAGTAGGCGTAGTATGTATCTTCATAGCTCACTCTCTCCTGGTATTTATCTTATTATGGCACCCATGAAGGCTTGTAAGCACTATGCTAGTTCTCGAACACCAATAACTGATTCACTTCTCTATGCCAAATTCTGGAAAATCGTTTGAGCGATTTTCAAAGCTGTGTTTTTCCATCGTTTGGTTTATCGTGTGGAAACCAATACACTTGGTAATAAATGTCAAGGGGCATTCTAACCTTAATCATAAATGCTGAAGGGAAGATGTAACCAACCAGATAGGTTGAGTGATAGTTTGCGTCCACGCTAACGCAATTCGGTGCGCAATGCA

Ace file of the UniGene sp_v3.0_unigene10883

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb\|AAL90901.1\| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb\|AAN18198.1\| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj\|BAE99252.1\| seed imbitition protein-like [Arabidopsis thali	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Seed imbibition protein	-	-	7.083e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactinol--raffinose galactosyltransferase.	EC:2.4.1.67	-	5.464e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		5.464e-17	%
Sma3	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	3.219e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		3.219e-11	%

Source	Gene names
Sma3	AGA1; AGA2; AGA3a; AGA3b; AT5G20250; A_IG002N01.5; At1g55740; At3g57520; At5g20250; B1142B04.25-1; B1142B04.25-2; CHLREDRAFT_205571; F20N2.12; F20N2.14; GSVIVT00011836001; GSVIVT00011837001; GSVIVT00015938001; GSVIVT00016957001; GSVIVT00025569001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20250.4	DIN10 Raffinose synthase family protein chr5:6833730-6836635 FORWARD LENGTH=844	61%
RefSeq	Arabidopsis thaliana	NP_001190347.1	putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002324632.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI9

Fln msg: your sequence is longer than subject: 769 - 338

Fln protein: MTITSGVTLADGQLFVRHKRVLSGVPENVLLTSASGIGHADGVFIGALCSETNSRHVVPLGTLENVRFLACFRFKLWWMSQKMGSSGKEIPMETQFLLLENKADEEGEETIYTVFLPLVEGSFRACLQGNENDALELCLESGDPAVEELSFTHSLLINAGTDPFKVITDGIKSVELHLQTFRHREEKKMPGIVDWFGWCTWDAFYTAVSAEGVEQGLKSLSEGGTPPRFVIIDDGWQSVGTDQRQEDAPEKELIGRLTHIKENHKFQKDGKEGEQQEDPTLGIQHVVRMAKEKHHLKYVYVWHAITGYWGGVKPGVSGMEHYDSKMKYPVTSPGVLNQEPGLQTDNLTTQGLGLVNPKKVFQFYNELHSYLAAAGIDGVKVDVQCILETLGAGLGGRVALTTQYHKALDASVASNFPDNGCIACMSHNTDALYCSRQTAIVRASDDFFPREPVSHTIHIASVAYNSVFLGEFMLPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGHHNFELLRKLVLPDGSILRPRLPGRPTSDCLFNDPNRDGKSLLKIWNMNKYTGVLGVFNCQGAAWSNIDKKNVFHDKNPDTLTGSVRAQDVHLLAEAAEDDWDGDSAIFTHSGELVRLPKHSLLPVTLKVLEKEIYTVSPIKGLGTGVSFAPLGLIDMFNAGGAIHNLEYQIHQDSQFSEATEILGMPTNPSESGQVKTATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETPVEGQLWNVTVEL*

Protein Length: 770

Fln nts: ATGGGGTCTGTGGCCTTGTGCCTTCTGTCTGAAAGTGAAAGGGCACAGAGCCGTTCCAAGTTCACGCTCATAAGCGACGTGTGCCGTGGGGGATTCGATCTCGGGCGGGCAGGGGCCGAGTCACTGGACATATTTTTTAAATGTTTGTTGGAAGGTTTGGTTTTTCGATGTAAGGGATTGGAATTTGGATAGGGAAGACAACTATGTTCTCGGTGCCAGATGGACATGACGGGGATCCCAGTCGTCACAATGGAATTGACTTCTTGAGGTTAACCAGTGAAGGACCTATCTGACGTCAAAGATTACTGCGTTTGACGTGTAAAGCTGAACGCCGTTGGTGGGAGTTGAGTGGGAAGAAGGAAAGGATAATGATTCGAGGGATGAGAGAGATTTCAGGGCTGAAGGCACGCTGGCGCCAGCTATAAATTCTGTGAAGCTGAGAGCCGCAACTGGCATTCTTGTGTGTGCGTCTAACGTGATAAGCTTCCCTCGGAGGACCAAGGTTTTGATGTTCGCCTCCCTTCATTTTGATCTGTTTCTTCGTTTTCATTTTGCGCAAAAGCTCCATTAATCGGTCATTCTTTCGGCGATTTCTTGTTTTCACGGGACGCATTTTCTGTATGTGCGCACACAGCGGCTGCTTTTAAGAAATCTGTAGCATTTCAAT_-_ATGACAATCACCTCAGGTGTCACACTCGCCGATGGGCAACTATTTGTCCGTCACAAGCGGGTTCTCTCAGGCGTTCCGGAAAATGTGCTGTTGACTTCTGCTTCAGGCATCGGCCACGCAGACGGTGTATTCATCGGAGCTTTGTGTTCGGAGACTAACAGTCGCCATGTCGTTCCTCTTGGCACTCTTGAGAATGTTAGATTCCTGGCTTGTTTCCGCTTCAAACTTTGGTGGATGTCCCAAAAAATGGGAAGTTCGGGAAAGGAAATTCCTATGGAGACTCAATTTTTGCTATTGGAAAACAAGGCTGATGAGGAGGGAGAGGAGACAATATATACTGTTTTCTTGCCTCTTGTGGAGGGTTCCTTCAGGGCATGTTTACAAGGAAACGAAAATGATGCATTGGAGCTCTGCTTAGAGAGTGGGGATCCTGCCGTGGAAGAATTGTCCTTTACACATTCGCTGCTTATTAATGCCGGAACAGACCCTTTTAAAGTGATTACAGATGGAATAAAGTCTGTGGAACTTCACTTGCAGACATTCCGTCACAGAGAGGAGAAAAAGATGCCTGGCATTGTTGACTGGTTTGGATGGTGTACTTGGGATGCCTTTTATACAGCTGTTTCAGCAGAGGGTGTAGAACAGGGGCTAAAGAGCTTGTCAGAAGGAGGCACCCCGCCACGTTTTGTCATCATTGATGATGGCTGGCAATCTGTTGGAACGGATCAGAGACAAGAAGATGCTCCTGAAAAAGAGCTTATAGGGCGCTTGACTCATATAAAAGAGAATCACAAATTCCAGAAGGATGGGAAAGAAGGTGAACAGCAGGAAGACCCAACTTTGGGCATTCAGCATGTAGTTCGAATGGCTAAAGAGAAGCATCATTTAAAGTATGTGTATGTATGGCACGCAATTACAGGCTACTGGGGAGGTGTTAAACCAGGTGTTTCTGGAATGGAGCACTACGACTCTAAAATGAAGTACCCTGTAACTTCACCAGGTGTCTTAAACCAGGAGCCGGGATTGCAAACAGATAATCTCACCACTCAAGGACTTGGTTTGGTGAATCCCAAGAAAGTTTTCCAATTCTACAACGAACTGCACAGTTACCTGGCAGCAGCAGGAATTGATGGCGTCAAAGTTGATGTTCAATGCATTCTCGAGACTCTTGGAGCAGGTCTTGGTGGAAGAGTGGCACTAACAACCCAATACCACAAGGCGTTGGATGCTTCTGTGGCTAGTAATTTCCCTGACAATGGCTGCATTGCATGCATGAGTCACAACACGGATGCACTTTATTGTTCAAGGCAGACGGCAATTGTAAGGGCTTCGGATGATTTCTTCCCAAGGGAGCCTGTATCTCACACCATCCATATTGCCTCAGTTGCTTACAACAGTGTCTTCCTTGGGGAGTTCATGCTACCTGATTGGGATATGTTTCATAGTCTTCATCCAGCTGCAGAATACCATGCCGCTGCACGCGCCATTGGTGGTTGTCCTATATACGTTAGTGATAAACCTGGTCATCACAACTTCGAGTTGTTGAGGAAGCTGGTCCTTCCGGATGGATCCATTTTGCGACCACGATTACCTGGCAGACCTACTTCTGATTGCTTGTTTAATGATCCCAACCGTGATGGAAAGAGTTTGTTGAAAATTTGGAACATGAACAAATACACAGGAGTTTTAGGGGTATTCAATTGCCAGGGAGCTGCTTGGAGCAATATCGACAAGAAAAATGTATTTCATGACAAAAACCCAGATACATTAACTGGAAGTGTTCGAGCTCAAGATGTACATTTGTTGGCAGAGGCCGCAGAAGACGATTGGGATGGTGATTCTGCAATATTTACTCATTCTGGTGAACTTGTGCGTCTTCCAAAACATTCACTTTTACCAGTCACACTCAAAGTTCTAGAGAAAGAAATTTACACAGTCTCACCTATAAAGGGTTTAGGAACAGGAGTTTCCTTTGCTCCGTTGGGTCTCATTGATATGTTCAATGCTGGAGGTGCTATCCATAATTTAGAGTACCAAATTCACCAAGATTCCCAGTTTTCTGAGGCAACCGAGATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAA___GCAAAAACGGCTTTCTACCCATCAACAGGCCTACCAAGAGAAAGCCTTAAAATGTAGGATTTTCACTTGTAAACCTTGACGAGGAACCGAAAGTAGGCGTAGTATGTATCTTCATAGCTCACTCTCTCCTGGTATTTATCTTATTATGGCACCCATGAAGGCTTGTAAGCACTATGCTAGTTCTCGAACACCAATAACTGATTCACTTCTCTATGCCAAATTCTGGAAAATCGTTTGAGCGATTTTCAAAGCTGTGTTTTTCCATCGTTTGGTTTATCGTGTGGAAACCAATACACTTGGTAATAAATGTCAAGGGGCATTCTAACCTTAATCATAAATGCTGAAGGGAAGATGTAACCAACCAGATAGGTTGAGTGATAGTTTGCGTCCACGCTAACGCAATTCGGTGCGCAATGCA

Fln Alignment:

Contig10883___LDASVASNFPDNGCIACMSHNTDALYCSRQTAIVRASDDFFPREPVSHTIHIASVAYNSVFLGEFMLPDWDMFHSLHPXXXXXXXXXXIGGCPIYVSDKPGHHNFELLRKLVLPDGSILRPRLPGRPTSDCLFNDPNRDGKSLLKIWNMNKYTGVLGVFNCQGAAWSNIDKKNVFHDKNPDTLTGSVRAQDVHLLAEAAEDDWDGDSAIFTH-SGELVRLPKHSLLPVTLKVLEKEIYTVSPIKGLGTGVSFAPLGLIDMFNAGGAIHNLEYQIHQDSQFSEATEILGMPTNPSESGQVKTATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETP-VEGQLWNVTVEL
D5AEI9_______________MEASIARNFPDNGIISCMSHNTDGLYSSKQTAVIRASDDFWPRDPASHTIHIASVAYNSVFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCSIYVSDKPGEHDFDLLKKIVLPDGSLLRAQLPGRPTKDCLFTDPARDGTNLLKLWNLNKHTGVLGVFNCQGAGWCRVDKKNLIHDSQPKTISGAIRSMDVDYLPEIADENWDGDSIVYSHRGGELVCLPKSAALPITLKAREYEVFTIVPLKWLSNDISFAPIGLIKMFNSGGAIS--AYWFYQN-----------------------TSTVYLKVRGCGDFGAYCSVMPEAVYVDSTETEFSYQEECRLISFTLRVPETELYLWDIRIKI

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
326	75		25		0.996473
327	25		75		0.996473
452	83		16		0.994512
453		66	16	16	0.988813
454			33	66	1.0
455		50	50		1.0
457	16	66	16		0.988813
488		14		85	0.993533
692	87		12		0.992554
880		10		90	0.90298
884		10		90	0.90298
885			10	90	0.90298
1177		10		90	0.90298
1300	85		14		0.993533
1313		87		12	0.992554
1875		20	80		0.995493
1915			12	87	0.992554
2041	12	75		12	0.975346
2123		83		16	0.999991
2427	90		10		0.90298
2900	0	96			0.998332
2920			97	2	0.903836
2936	2	97			0.938918
3037		2		90	0.999997
3050	95		4		0.99692
3129		96		3	0.991825
3189		3		96	0.989722
3191	3			96	0.993037
3192	4		93	2	0.970804
3193	4	95			0.99692
3231	8		91		0.999766
3305		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain