SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10872

Length: 762 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10872

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AP2 domain transcription factor [Arabidopsis thaliana]	-	-	8.0e-31	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	TINY-like protein	-	-	4.48e-27	-

Source	Gene names
Sma3	At1g01250; At1g77200; At2g25820; At2g35700; At2g44940; At3g16280; At3g60490; At4g16750; At4g32800; At5g11590; At5g25810; C1190ERIPDM; CBF7; CMe-DREB1; DREB; DREB2; DREB3; DREB56; DREB57; DREB72; DREB73; DREB74; DREB75; DREB76; DREB77; DREB78; DREB79; DREB

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
376			85	14	0.993533
382	85		14		0.993533
383		14		85	0.993533
389	14			85	0.993533
397		85	14		0.993533
398	85	14			0.993533
420	16			83	0.994512
450		16		83	0.994512
506			20	80	0.995493
507			20	80	0.995493
509	20	80			0.995493
514		20	80		0.995493
519		80		20	0.995493
521		80	20		0.995493
522	20		80		0.995493
527		20		80	0.995493
542			75	25	0.996473
548	75	25			0.996473
555		75		25	0.996473
556	25			75	0.996473
557		75		25	0.996473
561	75		25		0.996473
562	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain