SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10858

Length: 1603 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10858

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chalcone isomerase-like protein [Arabidopsis thaliana] gb\|AAG51975.1\|AC024260_13 chalcone isomerase, putative; 94270-95700 [Arabidopsis thaliana] gb\|ABF82628.1\| At1g53520 [Arabidopsis thaliana] gb\|AEE32951.1\| chalcone isomerase-like protein [Arabidopsis t	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	Gene names
Sma3	At1g53520; CHIL3; F22G10.11; GSVIVT00027944001; OSJNBa0086N11.26; Os02g0320300; PHYPADRAFT_127780; POPTRDRAFT_584905; RCOM_1182750; T3F20.16; VITISV_004495;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chalcone isomerase, subgroup	IPR003466	-	0.0	-
Sma3	Chalcone isomerase, 3-layer sandwich	IPR016088	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53520.1	Chalcone-flavanone isomerase family protein chr1:19976485-19977915 REVERSE LENGTH=287	45%
RefSeq	Arabidopsis thaliana	NP_175757.1	chalcone isomerase-like protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002331328.1	chalcone isomerase-like protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9R5

Fln msg:

Fln protein: MATAAIVVVAVCSSTHVSKIQKIFCGKNFSYPARISAQNRLINNNRSLESSGSELLIRRWKGAERTKMEQSNGLLVVPRAKARVGTEDFIVEPATNVKFRTSLKVPGGSSSLSLAGIGFREKKIAIISVKVYAAGLYVDATIASYLVAWSGKLESQIEQDNLFFNAVFEAPVEKSLQIVLVRDIDGETFWGALDEALSPRLKTTGAAEQKALEIFRETFQGRSLKRGTTIYLNWLKPSILFVSISSDGSPSVADVTIDSPAVAFALFDVYFGSHPVSLPLKKSVASGLASII*

Protein Length: 294

Fln nts: ATGGGGAAACAAACATGGGCAACACTTCATTATTTGACAATTTAATGCATCCATATTGAATGGGGTACAAGCTTTGGATTAGTCTGGCAAGCCATTTCTGTAACTACAACCTATAAGTAGAACCGGGGTTGGCAGCATTGTCACTGACTTTATTCAGAAAACAGCTTCAGAAATTAAGTTAGCAGTCACAAGCAGATCCAATTCAATCA_-_ATGGCTACAGCTGCTATAGTTGTGGTGGCAGTGTGTTCATCTACTCATGTTAGCAAGATTCAAAAGATCTTTTGCGGCAAAAATTTTAGCTACCCTGCAAGGATAAGTGCACAAAACCGACTTATCAACAATAACAGAAGCCTCGAGAGCTCAGGTTCGGAATTGTTGATACGCAGATGGAAAGGTGCTGAAAGAACCAAAATGGAACAATCCAATGGCCTTTTGGTGGTGCCCAGGGCAAAGGCAAGGGTTGGAACTGAAGACTTCATTGTGGAGCCGGCTACAAATGTAAAATTTCGAACTTCATTAAAGGTACCTGGTGGTTCAAGCTCATTATCGTTGGCTGGTATAGGTTTCCGAGAGAAAAAGATAGCAATAATTAGTGTCAAAGTTTATGCTGCGGGTTTGTATGTGGATGCGACAATTGCATCATACTTGGTTGCATGGAGTGGAAAATTGGAAAGTCAGATTGAACAGGATAATCTCTTTTTCAATGCTGTTTTTGAAGCACCTGTTGAGAAATCATTGCAGATTGTTTTGGTTCGTGACATAGATGGTGAAACCTTTTGGGGTGCCTTAGATGAGGCCCTTTCACCAAGGCTTAAAACTACAGGAGCTGCTGAACAAAAGGCTCTCGAGATCTTTCGTGAAACATTTCAGGGAAGGTCCCTCAAGCGAGGCACCACCATATATCTTAACTGGTTGAAGCCTTCTATATTGTTTGTTTCAATTTCTTCAGACGGATCCCCTTCAGTAGCAGATGTTACTATAGATTCACCGGCTGTTGCATTTGCTCTATTTGATGTGTATTTTGGAAGCCATCCAGTATCTCTTCCTCTCAAGAAATCTGTTGCTTCTGGATTAGCATCAATAATCTAA___ATGCTAGTGGATTTCGTTCCTTGAATCATCAGTGATATGTGATTATGCTTCTACTGTCCTGAAAATCAGCGCTCAAGGAGACTTAGGTTTCTAGATGTTGCTTCATTTGTTTGATAGATCTCCAATACTTGGTATTGTCCTAAATATAAATTCTCATGTTTGAATGGCTCAAAAATATCTGCAGTCAAGGATATGGAGAAGCATCACAAGGAATTTGCAGTGTCGATAAGATGGACTTGAATACATGTAAAATATTTTCCCACCTTTTTTAGGGTTTAAAAAGTAGTACTTTTTACATTGAATGATTGACAATTTGTTTCAACGCCATGCTAGAAGCCAAACATTCATTGCTAATTTGGATAATATGGACCAGTGGAATTTGATCTCGGAGTGTTACAAATTACCAAATGCACTAATGGCCCAAACTGATTCCTTAGTGTGATGTATACCATGATATTCATAACTATATCAATAAAGTCTGTTGGGAGTGGGAGCAAGAAGACAACAAATTACCA

Fln Alignment:

Contig10858___MATAAIVVVAVCSSTHVSKIQKIFCGKNFSYPARISAQNRLINNNRSLESSGSELLIRRWKGAERTKMEQSNGLLVVPRAKARVGTEDFIVEPATNVKFRTSLKVPXXXXXXXXXXXXFREKKIAIISVKVYAAGLYVDATIASYLVAWSGKLESQIEQDNLFFNAVFEAPVEKSLQIVLVRDIDGETFWGALDEALSPRLKTTGAAEQKALEIFRETFQGRSLKRGTTIYLNWLKPSILFVSISSDGSPSVADVTIDSPAVAFALFDVYFGSHPVSLPLKKSVASGLASII
D5A9R5_______________MATAATVVVAVCSSPHVINIQNINCSRHYSYPARISAHNLVINNNRSFGSSASDLLIRRWKGAERTKKEQPNGVWALPRAKATVGTEDFIVEPATNVKFLTSLNVPGGSSSLSLAGTGFREKKIAIISVKVYAAGLYVDTTIKSYLAAWSGKLGSQIEQDNLFFNAVFEAPVEKSLQIVLVRDIDGETFWGALDEALSPRLKTTGAAEQKALDIFRETFRGKSLKRGTTIYLNWLKSSIMLVSISSDGSPSVADATIDSPAVAFALFDVYFGSHPVSPPLKKSVASGLASII

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
527	83			16	0.994512
528		83		16	0.994512
530		16		83	0.994512
532	16		83		0.994512
533			16	83	0.994512
534	16		83		0.994512
536	16			83	0.994512
537	16			83	0.994512
538	16	83			0.994512
542	16	83			0.994512
546	16			83	0.994512
549	16			83	0.994512
551	16		83		0.994512
559		16	83		0.994512
560	16			83	0.994512
562			16	83	0.994512
563	83		16		0.994512
689	12		87		0.992554
895		88		11	0.923564
938	14			85	0.993533
940		85		14	0.993533
1158		95		5	0.997749
1190			6	93	0.99903
1499	90		9		1.0
1510		6	93		0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain