SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10835

Length: 1136 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10835

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP_transf_2 domain containing protein	-	-	1.0e-09	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Dephospho-CoA kinase	IPR001977	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18250.1	ATCOAD, COAD 4-phosphopantetheine adenylyltransferase chr2:7940025-7941499 FORWARD LENGTH=176	65%
RefSeq	Arabidopsis thaliana	NP_179417.1	phosphopantetheine adenylyltransferase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002327686.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYQ7

Fln msg:

Fln protein: MSLDQMPHRQNEECGSNSGNMDTYASPQFQSPPNSYDAVVLGGTFDRLHDGHRRLLKAAAELARVRVVVGVCTGPMLENKELAHLIEPVEKRIEAIENYIKSIKPGLLIQAEPIIDPYGPSIVDQDLEAIVVSKETLAGGLSVNKRREERGLSQLKVEVVDLVFEAGNGEKLSSTALRQLDAFEAGKNEKVSSTALRQLDAFEQTENECVVSLK*

Protein Length: 216

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTCCAGTGCTGCCATTATTCACTTATTCACCATGATTCTTATTCACTTGTTCACTGTGGTTCTTATTTGATGTCAATTCTGTTTTCTTCTCCTATTCACCACGGAAGGAAGGTGAATAGTGCTGCCTTAGCGAAATTGCATTTGCGAGGCACAGAAGAATCCCTCCTTTGCACGTTGCAATTTTTCTCACTCGTCAGAAGGCCTCAACCAGTGCAAGA_-_ATGTCTTTGGATCAAATGCCTCACCGGCAAAACGAGGAGTGCGGAAGCAACTCCGGAAATATGGATACTTATGCTTCTCCACAGTTTCAGTCTCCACCCAATTCCTATGATGCTGTTGTCCTAGGAGGCACTTTTGACAGACTGCACGATGGTCATCGTCGTCTCCTCAAGGCTGCAGCAGAATTGGCAAGGGTCAGAGTTGTTGTGGGGGTATGCACTGGGCCAATGTTGGAAAATAAAGAGCTTGCACACTTGATTGAACCTGTGGAAAAGAGAATCGAAGCAATTGAAAACTACATAAAGTCTATCAAACCAGGACTACTGATACAAGCGGAACCCATCATAGATCCATATGGTCCATCCATTGTGGATCAAGATCTAGAAGCCATCGTTGTCAGCAAGGAGACTTTGGCTGGTGGTTTGTCAGTCAATAAAAGAAGAGAAGAAAGGGGTCTATCTCAATTAAAGGTGGAAGTGGTAGACCTGGTCTTTGAAGCTGGAAATGGTGAAAAACTCAGCTCCACAGCATTGAGACAACTGGATGCATTTGAAGCTGGAAAAAATGAAAAAGTCAGCTCCACAGCATTGAGACAACTGGATGCATTTGAACAAACTGAGAATGAATGTGTTGTTTCTTTAAAGTGA___TCTTGCAGATTACAATATGAAACTTCACTGGAAACATTGCTTATTCATATTCATTTTAAAGATGATTGGGTTTGTGGTAGTCAGAATAGACAGCACACCTGCAATGGTGGAAATCAGTGAAATAACAATGGATCAATGTAGCTAGGAAGGATATCAATAACATGTATCTGTCTTCAATGCTGGAATCAATCTGTAATATTACAAAATTTGAAACTAAGAAGCAAGATCCAAACTGACTTTCTGAGG

Fln Alignment:

Contig10835___MDTYASPQFQSPPNSYDAVVLGGTFDRLHDGHXXXXXXXXXXXXXXXXXGVCTGPMLENKELAHLIEPVEKRIEAIENYIKSIKPGLLIQAEPIIDPYGPSIVDQDLEAIVVSKETLAGGLSVNKRREERGLSQLKVEVVDLVFEAGNGEKLSSTALRQLDAFEAGKNEKVSSTALRQLDAFEQTENECVVSLK
A9NYQ7_______________MDANASLQPESLPNSYDAVVLGGTFDRLHDGHRRLLKAAAELARVRVVVGVCTGPMLENKELAHLIEPVEKRIKAIENYIKSIKPGLVVQAEPITDPYGPSIVDEDLEAIVVSKETLAGGLSVNKRRAERGLSQLKVEVVNLVFEAGNGEKLSSTALRQLDAFEAGNGEKLGSTALRQLDAFEQTENECVVSLK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
52	33	66			0.997452
54		33	33	33	0.997753
55	66		33		0.997452
56	33		33	33	0.998258
58			33	66	0.997452
273		75		25	0.996473
334		25		75	0.996473
584	90		10		0.90298
611		83	16		0.999991
612		83	16		0.999991
900		85		14	0.993533
986	75		25		0.996473
1014	83		16		0.994512
1028		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain