SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10812

Length: 2804 nt

UniGene Fasta

>sp_v3.0_unigene10812
ATGGGATATTTGCTAGCTAATAGTATACGTCGTGACCTTGGCTGTCACTCAAGGTTTGTTCAATATTATCATGTTTGCTTTTTGTTTCAACTTTGGTTTCAGTCCTTCTTGAGCCCTATCGCCAAGAAACTGGGTCCCTCGGCTCTCGGTCGCATGGAAAGCGAGATCAACCGCTAAATCCCAAACTGCACTAACTGCATGTGAAAGAGGCAAAAAAATCTTAGCAATTTTACCCAAAGCAGTGCCAATGCTGATGGCCACAGGCTCAAATCCGCTCCAGGCTCATCGAAAATGTCTGGGATTTCCGGGGCGGGAATAAGTCCCGCTGGTCATTTAGTGCGTTCTGGTTCAAATTCGGGTAAACTTGGCGCAGTTTTGTGTCGGTTTGGCTAAGTTTGGCAGTCGGTTGAAGGGACTCTGTAATGGGAGCCATTGGCGCGTTCTATGATCGATTTTCCAACGCAGGACAAGACAGCCTGAGATATCGGACAGTTGTATTGATTTTTTTCGTGTCCAGATGTGGCTGGTTGGGTTGTAGGCCACATTAGATTAAGATTTTTGTTCAGGTTGAATTCCTTATTTTGGAAAAAGGAGCCCGGAATTTACTTTTCCCGCTTTCCTAAGATTATGAAGCTTGAATCGTTTTGAAGCTCGTGGTGAGAATGCATGTTGTCTGCTGTGAAGATTTCGAAACCGAGTTAGAGGAGGGTTATATTGAATTTGAAGCTGTTTTCGAGAAACTTCGCACAATTTATGTGATGATTGCGAAGATTCTCAAGCGATTGTGACGATTCTGAAGCTTTTTGCTAATGCGTTTAGATGTGCCTGTGAAGATGTTTAAAACTTTGAAGATTTAAACTACACTGTTACATATCCAGTATTTGGTGAGGGGAGATAGTTGCGCTTGGCTAAATTCTCCAGCAAAATGGGAAAATAGAAGATTTTAGGTTATGTTCGGGGCAAATATCAGGATTTTAACCTTAGATAGCAGTGCTTTATTGCGTATGATAGAAGCTTTTCAATCTCTTGAAATGTCTTAACAGGGAGCAGTTTCTGCATTTTGTTTCGCTTGAAGCTTTGCTGGTTTTTTCTGGCAATTTTCGATATTCAGTGACGGTCCTGTCCCCCGAGGTCCCAGAGGTTCGGCACAATGAAGAATGTTTTGAAGCATTGTGATCGCAAAATAAGCTCAAAGCAAGTTAAAATTGAGAATAAGAGCAATTTCTCGTCAGTTCCAACTGATCATTCAAGTAGCAGATTGAATGGCACTCGGTCTCTTCCTTTACCCGTTGACAATCAAACCCTGGATGATATCAATTTTGCAAAGAAAGAGTATAGAAGAGTGTCTTCTTGGTCTCATTATTTGGATTTCATTGGAGGAGAGCAGGCTATTGGAGATGGTGAAGAATGGATGATTGATATGTCTCAGTTGCTCATAGGCACTAAGTTTGCTTCTGGGACCTACAGCCGACTATACCACGGAATTTACAAACAGAGGCCTGTGGCTGTTAAGGTGATGAGGCAACCGGATGAGGATGACGCTGTTGCTACTTCATTAGAGAAGCAATTTACAGCGGAAGTCAAATTGCTATTTCGGCTAAGGCATCCGAACATCATAGATTTTGTTGCAGCATGCAGGAAGCCTCCTGTATTTTGCATCATCACTGAATATTTGCCTGGAGGTTCATTGAGGACATACCTTCATAAGCAGGAGCCACATTCAATTCCACTGAAACTTGTTTTGAAGATGGCCCTTGATATTGCTCGGGGAATGAAATATCTTCATTCTCAAGGTATAATGCATAGGGATCTGAAATCAGAGAATCTCCTCTTGGGTGATGACATGTGCGTGAAAGTGGCTGATTTTGGGGTGTCATGTTTGGAGTCCCAATGTGACACAACGAGAGGCTTTATGGGTACTTACCGCTGGATGGCACCAGAGATGATCAAGGAAAAGCCATATACAAGAAAAGTTGATGTGTACAGCTTTGGAATTGTTCTTTGGGAGCTCTTGACAGCGCTGATCCCGTTTCAAGATATGACCCCAGTACAAGCTGCTTTTGCAGTATCACATAAGAATGCCAGGCCACCTTTGCCGACTGCTTGCCCTGCTGCATTTGTTCACCTTATCAAGCGATGCTGGGCAACAAATCCAGACAAGCGGCCAGATTTTGACCATATTGTATCACTTCTAGAACAATACCGTGATTCTCTTAGAGAAGATCCTGAATTCCTTTTGCATTACAAGCCTACAGAGCGGCACAAACTATTTCGATTCTTCAAGAGTTGTGTTCCTATTGGTGGCTCAAGTTTTTTTACGGACATAGGGACCGCCAACTGAATAGAAATGTTCACCATCTGGTGAAGCATATAGTCATTTTATATTTGTAGAGCCTGTGAATTGAAAACTGTTGATTGTATGATCTACTAAAGATTGTTCATTTTTTGCTTTGTATCATAACTCTTTTGGAGGACTGTGCTCAATATGTGCACCTTTAAGGAGGCACCCAACTATGTATGCATGGTATAATTCTTTTTTCGATTTGTAAAAACATGGTTGACGTACAAAGCCAATCAAGTGGGCCTTATTCGGTTGTTACCCAGTCATGATACTAAGTTTGTCACTTGACAAGGAGTGCACACTTGGGCGGCGGATTTTTATCCTTGATTTTGTCCTGAAGCACTGATTCATATTATGGGCATATGAAATTATGTATATTCAGATTAACTCTGGATCATGATTTTGTGCTATCAAGTGCAATATGAATACCTAAACCTCTGTACTGAATTCATATCCATTTGAT

Ace file of the UniGene sp_v3.0_unigene10812

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group] dbj\|BAD44887.1\| putative protein kinase [Oryza sativa Japonica Group] gb\|EAY72211.1\| hypothetical protein OsI_00062 [Oryza sativa Indica Group] gb\|EAZ10230.1\| hypothetical protein OsJ_00060 [Oryza sati	-	-	0.0	67%
FL-Next	sp=Serine/threonine-protein kinase HT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Protein kinase	-	-	2.481e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.62e-09	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.316e-15	-

Source	Gene names
Sma3	16.EGGPLANT.9; AT4G31170; AT4g14780; AT4g35780; AT4g38470; At1g62400; At2g17700; At2g24360; At3g22750; At3g46930; At3g63260; At4g14780; At4g14780/dl3430w; At4g31170; At5g01850; At5g40540; At5g50000; At5g50180; At5g58950; At5g66710; B1015E06.24; B1131G07.1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	ApaG domain	IPR007474	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR015783	-	-
Sma3	Serine/threonine-protein kinase, ATN1-like	IPR015784	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62400.1	HT1 Protein kinase superfamily protein chr1:23090243-23091529 FORWARD LENGTH=345	60%
RefSeq	Arabidopsis thaliana	NP_176430.1	serine/threonine-protein kinase HT1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002318042.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q2MHE4

Fln msg:

Fln protein: MKNVLKHCDRKISSKQVKIENKSNFSSVPTDHSSSRLNGTRSLPLPVDNQTLDDINFAKKEYRRVSSWSHYLDFIGGEQAIGDGEEWMIDMSQLLIGTKFASGTYSRLYHGIYKQRPVAVKVMRQPDEDDAVATSLEKQFTAEVKLLFRLRHPNIIDFVAACRKPPVFCIITEYLPGGSLRTYLHKQEPHSIPLKLVLKMALDIARGMKYLHSQGIMHRDLKSENLLLGDDMCVKVADFGVSCLESQCDTTRGFMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELLTALIPFQDMTPVQAAFAVSHKNARPPLPTACPAAFVHLIKRCWATNPDKRPDFDHIVSLLEQYRDSLREDPEFLLHYKPTERHKLFRFFKSCVPIGGSSFFTDIGTAN*

Protein Length: 398

Fln nts: ATGGGATATTTGCTAGCTAATAGTATACGTCGTGACCTTGGCTGTCACTCAAGGTTTGTTCAATATTATCATGTTTGCTTTTTGTTTCAACTTTGGTTTCAGTCCTTCTTGAGCCCTATCGCCAAGAAACTGGGTCCCTCGGCTCTCGGTCGCATGGAAAGCGAGATCAACCGCTAAATCCCAAACTGCACTAACTGCATGTGAAAGAGGCAAAAAAATCTTAGCAATTTTACCCAAAGCAGTGCCAATGCTGATGGCCACAGGCTCAAATCCGCTCCAGGCTCATCGAAAATGTCTGGGATTTCCGGGGCGGGAATAAGTCCCGCTGGTCATTTAGTGCGTTCTGGTTCAAATTCGGGTAAACTTGGCGCAGTTTTGTGTCGGTTTGGCTAAGTTTGGCAGTCGGTTGAAGGGACTCTGTAATGGGAGCCATTGGCGCGTTCTATGATCGATTTTCCAACGCAGGACAAGACAGCCTGAGATATCGGACAGTTGTATTGATTTTTTTCGTGTCCAGATGTGGCTGGTTGGGTTGTAGGCCACATTAGATTAAGATTTTTGTTCAGGTTGAATTCCTTATTTTGGAAAAAGGAGCCCGGAATTTACTTTTCCCGCTTTCCTAAGATTATGAAGCTTGAATCGTTTTGAAGCTCGTGGTGAGAATGCATGTTGTCTGCTGTGAAGATTTCGAAACCGAGTTAGAGGAGGGTTATATTGAATTTGAAGCTGTTTTCGAGAAACTTCGCACAATTTATGTGATGATTGCGAAGATTCTCAAGCGATTGTGACGATTCTGAAGCTTTTTGCTAATGCGTTTAGATGTGCCTGTGAAGATGTTTAAAACTTTGAAGATTTAAACTACACTGTTACATATCCAGTATTTGGTGAGGGGAGATAGTTGCGCTTGGCTAAATTCTCCAGCAAAATGGGAAAATAGAAGATTTTAGGTTATGTTCGGGGCAAATATCAGGATTTTAACCTTAGATAGCAGTGCTTTATTGCGTATGATAGAAGCTTTTCAATCTCTTGAAATGTCTTAACAGGGAGCAGTTTCTGCATTTTGTTTCGCTTGAAGCTTTGCTGGTTTTTTCTGGCAATTTTCGATATTCAGTGACGGTCCTGTCCCCCGAGGTCCCAGAGGTTCGGCACA_-_ATGAAGAATGTTTTGAAGCATTGTGATCGCAAAATAAGCTCAAAGCAAGTTAAAATTGAGAATAAGAGCAATTTCTCGTCAGTTCCAACTGATCATTCAAGTAGCAGATTGAATGGCACTCGGTCTCTTCCTTTACCCGTTGACAATCAAACCCTGGATGATATCAATTTTGCAAAGAAAGAGTATAGAAGAGTGTCTTCTTGGTCTCATTATTTGGATTTCATTGGAGGAGAGCAGGCTATTGGAGATGGTGAAGAATGGATGATTGATATGTCTCAGTTGCTCATAGGCACTAAGTTTGCTTCTGGGACCTACAGCCGACTATACCACGGAATTTACAAACAGAGGCCTGTGGCTGTTAAGGTGATGAGGCAACCGGATGAGGATGACGCTGTTGCTACTTCATTAGAGAAGCAATTTACAGCGGAAGTCAAATTGCTATTTCGGCTAAGGCATCCGAACATCATAGATTTTGTTGCAGCATGCAGGAAGCCTCCTGTATTTTGCATCATCACTGAATATTTGCCTGGAGGTTCATTGAGGACATACCTTCATAAGCAGGAGCCACATTCAATTCCACTGAAACTTGTTTTGAAGATGGCCCTTGATATTGCTCGGGGAATGAAATATCTTCATTCTCAAGGTATAATGCATAGGGATCTGAAATCAGAGAATCTCCTCTTGGGTGATGACATGTGCGTGAAAGTGGCTGATTTTGGGGTGTCATGTTTGGAGTCCCAATGTGACACAACGAGAGGCTTTATGGGTACTTACCGCTGGATGGCACCAGAGATGATCAAGGAAAAGCCATATACAAGAAAAGTTGATGTGTACAGCTTTGGAATTGTTCTTTGGGAGCTCTTGACAGCGCTGATCCCGTTTCAAGATATGACCCCAGTACAAGCTGCTTTTGCAGTATCACATAAGAATGCCAGGCCACCTTTGCCGACTGCTTGCCCTGCTGCATTTGTTCACCTTATCAAGCGATGCTGGGCAACAAATCCAGACAAGCGGCCAGATTTTGACCATATTGTATCACTTCTAGAACAATACCGTGATTCTCTTAGAGAAGATCCTGAATTCCTTTTGCATTACAAGCCTACAGAGCGGCACAAACTATTTCGATTCTTCAAGAGTTGTGTTCCTATTGGTGGCTCAAGTTTTTTTACGGACATAGGGACCGCCAACTGA___ATAGAAATGTTCACCATCTGGTGAAGCATATAGTCATTTTATATTTGTAGAGCCTGTGAATTGAAAACTGTTGATTGTATGATCTACTAAAGATTGTTCATTTTTTGCTTTGTATCATAACTCTTTTGGAGGACTGTGCTCAATATGTGCACCTTTAAGGAGGCACCCAACTATGTATGCATGGTATAATTCTTTTTTCGATTTGTAAAAACATGGTTGACGTACAAAGCCAATCAAGTGGGCCTTATTCGGTTGTTACCCAGTCATGATACTAAGTTTGTCACTTGACAAGGAGTGCACACTTGGGCGGCGGATTTTTATCCTTGATTTTGTCCTGAAGCACTGATTCATATTATGGGCATATGAAATTATGTATATTCAGATTAACTCTGGATCATGATTTTGTGCTATCAAGTGCAATATGAATACCTAAACCTCTGTACTGAATTCATATCCATTTGAT

Fln Alignment:

Contig10812___SKQVKIENKSNFSSVPTDHSSSRLNGTRSLPLPVDNQTLDDINFAKKEYRRVSSWSHYLDFIG---GEQAIGDGEEWMIDMSQLLIGTKFASGTYSRLYHGIYKQRPVAVKVMRQPDEDDAVATSLEKQFTAEVKLLFRLRHPNIIDFVAACRKPPVFCIITEYLPGGSLRTYLHKQEPHSIPLKLVLKMALDIARGMKYLHSQGIMHRDLKSENLLLGDDMCVKVADFGVSCLESQCDTTRGFMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELLTALIPFQDMTPVQAAFAVSHKNARPPLPTACPAAFVHLIKRCWATNPDKRPDFDHIVSLLEQYRDSLREDPEFLLHYKPTERHK-LFRFFKSCVPIGGSSF
Q2MHE4_______________SLRSKLPLEPSLPNLPCNPSSSKTNRY------AEAETME-----KKRFDSMESWSMILESENVETWEASKGEREEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCREAKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSENPSKRPDFSNIVAVLEKYDECVKEGLPLTSHASLTKTKKAILDHLKGCVTSISSPF

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
34		33	66		0.997452
37	33	66			0.997452
41	33		66		0.997452
42		66	33		0.997452
46	33	66			0.997452
47	66			33	0.997452
48		66	33		0.997452
50		66		33	0.997452
51	66	33			0.997452
146		16		83	0.994512
2364		20	80		0.995493
2372	80	20			0.995493
2378			20	80	0.995493
2382			20	80	0.995493
2384		20		80	0.995493
2387	80	20			0.995493
2388	20			80	0.995493
2430	83	16			0.994512
2431		83	16		0.994512
2433	83		16		0.994512
2435	83	16			0.994512
2436		16	83		0.994512
2437	83			16	0.994512
2439			16	83	0.994512
2441		16		83	0.994512
2442	16			83	0.994512
2443		83	16		0.994512
2444	83			16	0.994512
2445		16		66	0.988813
2446	16			83	0.994512
2447		16		83	0.994512
2449		16		83	0.994512
2450	16			83	0.994512
2457		11		88	0.923564
2662			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain