SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10786

Length: 1476 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene10786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	GTP-binding protein	-	-	1.704e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	3.9e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		3.9e-19	%
Sma3	Metabolic pathways	01100		3.9e-19	%

Source	Gene names
Sma3	40.t00003; ARA-2; ARA-3; AT4g17160; AT4g17170; AT4g18430; AT4g18800; AT4g35860; AT4g39990; At1g06400; At1g09630; At1g16920; At1g28550; At2g33870; At3g09900; At3g12160; At3g15060; At3g15060/K15M2_21; At3g46060; At3g46830; At4g17160; At4g17170; At4g18430; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17170.1	AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B RAB GTPase homolog B1C chr4:9644908-9646220 REVERSE LENGTH=211	82%
RefSeq	Arabidopsis thaliana	NP_193450.1	RAB GTPase homolog B1C [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002308739.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD24

Fln msg: your sequence is shorter than subject: 214 - 234

Fln protein: MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFTHLSTWLEDARQHANPNMTIMLIGNKCDLAHRRAVTTEEGAQFAKENGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVGYGAGTGAAGSTRNDSIASQRSSCCN*

Protein Length: 215

Fln nts: ATGGGGACTCTCTGGAACTCCTACGAGTGCTCTTACCAGCGAGATTATTACCCCCTGGAAAAGAGAAAAATTATTAACACTTGTCAAGTTATTGTGAGGTTTACCAATGCGAGAAGAAAAACCCGAACAGCGATGCAAGGTGCCCACTATTCATGGATGCTATACATGCATCACACAATTGTTGGATTTAAACTTTCCTTCGGGTCTGGAGTGCAAGTGAATTGAATCGAAAGAGCGAAGCCACAGGAGCCGGTGTCGAATCTGCAGAGTTTGAAG_-_ATGTCTTACGCTTACCTTTTCAAATATATCATAATCGGAGACACTGGCGTAGGTAAATCATGCCTGCTATTACAGTTCACTGATAAACGCTTTCAGCCAGTCCATGACTTGACGATTGGTGTCGAGTTCGGAGCGCGTATGATCACCATTCGCAACAAGCCAATTAAGCTTCAAATATGGGATACTGCAGGGCAAGAGTCATTCCGTTCCATAACCAGATCTTACTACCGGGGAGCAGCTGGAGCACTTTTGGTTTATGATATTACACGGAGGGAAACTTTCACCCATCTTTCTACTTGGTTGGAGGATGCCAGGCAACATGCAAACCCAAATATGACTATCATGCTGATTGGTAACAAGTGTGATCTTGCCCATAGAAGGGCTGTTACGACAGAAGAGGGGGCACAATTTGCGAAGGAAAATGGCTTGATCTTCTTGGAAACTTCTGCAAAGACATCTCAAAATGTTGAGGAGGCCTTCATAAATACAGCTGCTAAGGTTTACCAAAAGATCGAAGAGGGAATACTTGACGTTTCTAATGAGTCTTTGGGTATCAAGGTGGGCTATGGGGCTGGTACTGGAGCAGCTGGGTCAACAAGAAATGATTCCATTGCCTCACAAAGAAGTAGCTGTTGCAATTGA___ACAGGATATTATCAGTGGAATGGAAGGCAGTCTCAATTGGAGTTAGTCTTGCATTTCCACACATCATTAAAAAGGATCGAGAATGCTGTTGTGTTGGAGTATATATGGTGTTTATTTGTCCAAATACAGTGCAGATTTTAAGTTGTTCTGCTGAAAAGTTTAGTGTTCTGTAAATTTTATTCTATTATTGAACATATCATGATTGCCATCTTGTAGATAACTAGGATTTGTGACTTGCATTCTTATAAATTTCATCAAGTGTGTATTCCTTCTGGCAGAAAGTCTTAGCATGTTTGCTCACTGGTTGCAAACGGCAATCAATGTATGGTCATGGACTGCATTATTTTTATGAATTATGTGCAATAAAATGGCAATATAAGTTTTGCAATGCACACAACTTGTGTACAATTTTATGGAAGAAGAAATTTGGATTTCTCCAATGGACATGTAACTTGTAAGTTTCTGCAAAGCAGCGTCATAATTTCAGTAATGGAGATGTAACTTGTGTATGACTTTCTGCCAGGGCTTATGGCAGATATTTGTTGGGTCTTATGGTAT

Fln Alignment:

Contig10786___MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------------------RETFTHLSTWLEDARQHANPNMTIMLIGNKCDLAHRRAVTTEEGAQFAKENGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVXXXXXXXXXXSTRNDSIASQRSSCCN
D5AD24_______________MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRCQLAFMYMIKTEGSRYHFIIKQRETFTHLSTWLEDARQHASPNMTIMLIGNKCDLAHRRAVTTEEGAQFAKENGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVGYGAGTGAAGSTRNDSIASQ-SSCCS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
123	66			33	0.997452
124		66	33		0.997452
125		66	33		0.997452
126		66	33		0.997452
144	16		83		0.994512
146	16	83			0.994512
147		83		16	0.994512
148	83		16		0.994512
149		83	16		0.994512
150			16	83	0.994512
156		33		66	1.0
1302			10	85	0.999793
1312	81			6	0.999943
1398	87			12	0.992554
1408		16		83	0.994512
1413			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain