SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene10778

Length: 2489 nt

UniGene Fasta

>sp_v3.0_unigene10778
TACATGGGGACATGGTAAATCATTGGGTTTCGGAATTTTGTTCACATGTATATGGTGATGGATCAGTGTTTGTTGGGAGCTACATCGTAACAAATTTGTGGAAATACTTTGGCTTGCAATTCAAGGTACCTCGCCTTCGCCTGCCTATAATATAACAGGCAAAGGCTATTTTGTGTGCAGAGCATTCATTATTTCCTTCCTATATTGATCGATCGAGAGAGAGGGTATTGATGGAGAAGGGCGTAGGCGAATTGATTCGTGGACTTCGTGCGTCTGCCAATGGCGCCCTGAGTCAGTACGAGCCCGTCACACTGGTCATCTTCCCCTTTGTAGCCTCTCTTTTGAGCCTTGTGGTGGGCAGGCTCATTCATCTCTCCCTGCAAATGGTGCAGGAAAATGGACTCAAGGCAACCATTGCAATTATTGTTATGAATACCATCAGGCTGATTCCTGGAGTCAGAGGTCACATCGAACGGGAGAAGGGAAAGGTTGTTGAGAAGATGCAGTCTAGTGTTAAATCTGGACGAGAAAATTGGCAAACTGAGCTGCCAAGGGCTGGTCTTGGTATAGGAGTCATAGAAAGGTTGAAATTTGAGAAGTCAAAAGATGTGCAATGGCAAGGAAGATGCTCTGGTACAGTGTATATTGGTGGGAGTGAATCCGAAGGACATTTTTCACTGATAAATGAAGCATATTCCATGTTTTCTCACACCAACCCACTGCATTTGAGCGTTTTCCCAAGTATAGCACGATTTGAGAGTGAGGTGGTAGCAATGACAGCAAGCATGTTTGGTAGTAGAGAAAAGGCATCTGGAGGACAAGTTTGTGGTAATATGTCTTCGGGAGGCACAGAAAGTATTATACTTGCAGTAAAGTCTTCACGGGACTATATGAAAGTCAAGAAGGGAATTATGAAACCAGAAATGATAATTCCAGAATCTGCCCATTCTGCATATGATAAAGCGGCCCAATACCTTAAAATCAAGCTATGGCGTGTACCGGTAAACGAAGATTTCCAAGCAGATGTAAAAGCAATCCAGCGTTATTTGAACAAGAATACGGTTATGATTGTTGGCTCAGCACCGGGTTTTCCTCATGGTATCATTGATCCCATCGAAGAACTTGGAGACTTGGCCTTGCGCTGGGGTATTTGCTTTCACGTTGATCTCTGCCTTGGAGGTTTTGTGCTTCCTTTTGCTCGCAAATTAGGGTATCCAATTCCACCTTTTGATTTCACTGTTCAAGGAGTAACTTCAATATCAGTGGATACTCACAAGTATGGCCTAGGGCCAAAGGGCACAAGTGTTGTGCTGTATCGCAATCATGAAATCAGAAAGCAACAATTTGTGGCTGTAACGGAGTGGTCAGGAGGTCTTTATGTTTCACCAACTGTTGCTGGAAGCAGGCCTGGTGGTCTTATTGCTGGTGCCTGGGCAGCTATGATGAGTGTTGGGGAGGAAGGATATCTGGAGGCAGTGAGAAAAGTAATGGAAGTTTCAAAAACTTTTCTGCAAGGAATAAAGCAAATTCCAGAACTATTCATTGTGGGAAGACCAGACATGACAGTCATTGCATTTGGATCAGATAAGCTCGATATTTTTAAAGTGAATGATGTTCTGTCAACACGAGGATGGCATCTAAATGCTTTACAAAGACCTAACAGCATACACATATGTCTGACTCTTCAGCATACCCTTATAGCAGAAGATTTCTTGAAAGATCTGAAAGAAGCAGTTACAACTGTGCAAGAAAATCCAAGTGCATTTGAAGATGGCATGGCTCCAATATATGGAGCTGCTGGAAAGATGCCAGACAGAGGGATGGTGCAGGAGTTTCTGATTGAATATATGGACAATGCTTGCTAGTCACTTTCAAAAATATTTTTTACACTGATACTAGGTGATACTATCAGTCAATGCCATTATATCATTCTTTATGATTTGCAGACCAAGATGTAGAATGCCAGATTTCCTGTTTCCATATTATCAAATTTATGTATCTCAATTATGACTCATGGGATGGCAAATCAGGTTTCCCTTTATCTTGGAAATGTGATTTGTCGTATTTCCTGTATCTCAAACTATGTCACATGGGATTGCAAGTCAATATTTCATTTATCTTGGAAATATGATTTGTATTCTTTTGTGTATCCCAAAATTTCACTCGGGATGGCAAATCTAGCTCCCCTTTATCTTGGAAACATGATTTGTGCTCTTCTGTTTTAACTTTTATGTCAAAAGGTGCATTAATGTCAAGTTCTTGCTTTTCCAGTTCTAGTTATAGTAAACTGAATTTCAATATCACAGCTGGGAGTGTCCTCATTTATCATTTATGCACAGACAAACAAATTCAGGGTATCATTTTTCTCTAATCATCAATTTGATGAAAGATACTGTTTTTATTTGATGTTGTATCATTGCACTATATATGTTACTTGATGTGCTTTATGCCATCGGTAGTTAAAGTTTATTAAATATTCCCGTTTCCCT

Ace file of the UniGene sp_v3.0_unigene10778

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sphingosine phosphate lyase, putative n=1 Tax=Ricinus communis RepID=B9RMB8_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G27980.1	DPL1, ATDPL1 dihydrosphingosine phosphate lyase chr1:9748812-9752618 FORWARD LENGTH=544	68%
RefSeq	Arabidopsis thaliana	NP_174119.1	Sphingosine-1-phosphate lyase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002304674.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF1

Fln msg:

Fln protein: MEKGVGELIRGLRASANGALSQYEPVTLVIFPFVASLLSLVVGRLIHLSLQMVQENGLKATIAIIVMNTIRLIPGVRGHIEREKGKVVEKMQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFSHTNPLHLSVFPSIARFESEVVAMTASMFGSREKASGGQVCGNMSSGGTESIILAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELGDLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDTHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMSVGEEGYLEAVRKVMEVSKTFLQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTRGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKEAVTTVQENPSAFEDGMAPIYGAAGKMPDRGMVQEFLIEYMDNAC*

Protein Length: 546

Fln nts: TACATGGGGACATGGTAAATCATTGGGTTTCGGAATTTTGTTCACATGTATATGGTGATGGATCAGTGTTTGTTGGGAGCTACATCGTAACAAATTTGTGGAAATACTTTGGCTTGCAATTCAAGGTACCTCGCCTTCGCCTGCCTATAATATAACAGGCAAAGGCTATTTTGTGTGCAGAGCATTCATTATTTCCTTCCTATATTGATCGATCGAGAGAGAGGGTATTG_-_ATGGAGAAGGGCGTAGGCGAATTGATTCGTGGACTTCGTGCGTCTGCCAATGGCGCCCTGAGTCAGTACGAGCCCGTCACACTGGTCATCTTCCCCTTTGTAGCCTCTCTTTTGAGCCTTGTGGTGGGCAGGCTCATTCATCTCTCCCTGCAAATGGTGCAGGAAAATGGACTCAAGGCAACCATTGCAATTATTGTTATGAATACCATCAGGCTGATTCCTGGAGTCAGAGGTCACATCGAACGGGAGAAGGGAAAGGTTGTTGAGAAGATGCAGTCTAGTGTTAAATCTGGACGAGAAAATTGGCAAACTGAGCTGCCAAGGGCTGGTCTTGGTATAGGAGTCATAGAAAGGTTGAAATTTGAGAAGTCAAAAGATGTGCAATGGCAAGGAAGATGCTCTGGTACAGTGTATATTGGTGGGAGTGAATCCGAAGGACATTTTTCACTGATAAATGAAGCATATTCCATGTTTTCTCACACCAACCCACTGCATTTGAGCGTTTTCCCAAGTATAGCACGATTTGAGAGTGAGGTGGTAGCAATGACAGCAAGCATGTTTGGTAGTAGAGAAAAGGCATCTGGAGGACAAGTTTGTGGTAATATGTCTTCGGGAGGCACAGAAAGTATTATACTTGCAGTAAAGTCTTCACGGGACTATATGAAAGTCAAGAAGGGAATTATGAAACCAGAAATGATAATTCCAGAATCTGCCCATTCTGCATATGATAAAGCGGCCCAATACCTTAAAATCAAGCTATGGCGTGTACCGGTAAACGAAGATTTCCAAGCAGATGTAAAAGCAATCCAGCGTTATTTGAACAAGAATACGGTTATGATTGTTGGCTCAGCACCGGGTTTTCCTCATGGTATCATTGATCCCATCGAAGAACTTGGAGACTTGGCCTTGCGCTGGGGTATTTGCTTTCACGTTGATCTCTGCCTTGGAGGTTTTGTGCTTCCTTTTGCTCGCAAATTAGGGTATCCAATTCCACCTTTTGATTTCACTGTTCAAGGAGTAACTTCAATATCAGTGGATACTCACAAGTATGGCCTAGGGCCAAAGGGCACAAGTGTTGTGCTGTATCGCAATCATGAAATCAGAAAGCAACAATTTGTGGCTGTAACGGAGTGGTCAGGAGGTCTTTATGTTTCACCAACTGTTGCTGGAAGCAGGCCTGGTGGTCTTATTGCTGGTGCCTGGGCAGCTATGATGAGTGTTGGGGAGGAAGGATATCTGGAGGCAGTGAGAAAAGTAATGGAAGTTTCAAAAACTTTTCTGCAAGGAATAAAGCAAATTCCAGAACTATTCATTGTGGGAAGACCAGACATGACAGTCATTGCATTTGGATCAGATAAGCTCGATATTTTTAAAGTGAATGATGTTCTGTCAACACGAGGATGGCATCTAAATGCTTTACAAAGACCTAACAGCATACACATATGTCTGACTCTTCAGCATACCCTTATAGCAGAAGATTTCTTGAAAGATCTGAAAGAAGCAGTTACAACTGTGCAAGAAAATCCAAGTGCATTTGAAGATGGCATGGCTCCAATATATGGAGCTGCTGGAAAGATGCCAGACAGAGGGATGGTGCAGGAGTTTCTGATTGAATATATGGACAATGCTTGCTAG___TCACTTTCAAAAATATTTTTTACACTGATACTAGGTGATACTATCAGTCAATGCCATTATATCATTCTTTATGATTTGCAGACCAAGATGTAGAATGCCAGATTTCCTGTTTCCATATTATCAAATTTATGTATCTCAATTATGACTCATGGGATGGCAAATCAGGTTTCCCTTTATCTTGGAAATGTGATTTGTCGTATTTCCTGTATCTCAAACTATGTCACATGGGATTGCAAGTCAATATTTCATTTATCTTGGAAATATGATTTGTATTCTTTTGTGTATCCCAAAATTTCACTCGGGATGGCAAATCTAGCTCCCCTTTATCTTGGAAACATGATTTGTGCTCTTCTGTTTTAACTTTTATGTCAAAAGGTGCATTAATGTCAAGTTCTTGCTTTTCCAGTTCTAGTTATAGTAAACTGAATTTCAATATCACAGCTGGGAGTGTCCTCATTTATCATTTATGCACAGACAAACAAATTCAGGGTATCATTTTTCTCTAATCATCAATTTGATGAAAGATACTGTTTTTATTTGATGTTGTATCATTGCACTATATATGTTACTTGATGTGCTTTATGCCATCGGTAGTTAAAGTTTATTAAATATTCCCGTTTCCCT

Fln Alignment:

Contig10778___MEKGVGELIRGLRASANGALSQYEPVTLVIFPFVASLLSLVVGRLIHLSLQMVQENGLKATIAIIVMNTIRLIPGVRGHIEREKGKVVEKMQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFSHTNPLHLSVFPSIARFESEVVAMTASMFGSREKASGGQVCGNMSSGGTESIILAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELGDLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDTHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMSVGEEGYLEAVRKVMEVSKTFLQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTRGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKEAVTTVQENPSAFEDGMAPIYGAAGKMPDRGMVQEFLIEYMDNAC
A9NUF1_______________MEKAVGEWICGLRASANGALRQYEPVILVIFPFVASLLSLVVGRLIHLFLQLAQDNGFKGAFLIILMNNIRLIPGLRGYIEREKGKVVGKLQSSVKSGRENWQTELPRAGLGIGVIERLKFEKSKDVQWQGRCSGTVYIGGSESEGHFSLINEAYSMFAHTNPLHLSIFPSIARFEGEVVAMTASMFGSREKASGGQVCGNMSSGGTESILLAVKSSRDYMKVKKGIMKPEMIIPESAHSAYDKAAQYLKIKLWRVPVNEDFQADVKAIQRYLNKNTVMIVGSAPGFPHGIIDPIEELADLALRWGICFHVDLCLGGFVLPFARKLGYPIPPFDFTVQGVTSISVDIHKYGLGPKGTSVVLYRNHEIRKQQFVAVTEWSGGLYVSPTVAGSRPGGLIAGAWAAMMTVGEEGYLEAVRKVMEVSKTIQQGIKQIPELFIVGRPDMTVIAFGSDKLDIFKVNDVLSTQGWHLNALQRPNSIHICLTLQHTLIAEDFLKDLKKAVTTVQENPSAFEDGMAPIYGAAAKMPDRGMVQDLLIEYMDNTC

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
253			33	66	0.997452
464			33	66	1.0
666	10		90		0.90298
725		11		88	0.923564
745			10	90	0.90298
746	90			10	0.90298
747		10	90		0.90298
748		90		10	0.90298
751			90	10	0.90298
752	90		10		0.90298
753		10		90	0.90298
783	88		11		0.923564
784			88	11	0.923564
786	88		11		0.923564
899		90		10	0.90298
904	81		18		0.999994
970	88		11		0.923564
1008	87		12		0.992554
1062	12		87		0.992554
1063			12	87	0.992554
1065	87	12			0.992554
1067	12		87		0.992554
1068	87	12			0.992554
1108	85		14		0.993533
1160		12		87	0.992554
1161	12		87		0.992554
1179	12		87		0.992554
1180	12		87		0.992554
1182			12	87	0.992554
1496	44			55	1.0
1591		11		88	0.923564
1623	87			12	0.992554
1624		87		12	0.992554
2200	13		86		1.0
2263		16		83	0.994512
2301			11	88	0.923564
2349		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain